Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g1140 ATGGCCACCGGCGTGCTGCTCCGTTCTCTTCGACGTCGCGATTTAGCCTCCTCTTCCCTTTCAGCTTACCGATCCTTAACAAGTAATGCCAAGCCGTCGTGGGGAAATTCCCACCTTAGCCAATCATGGGCAAGTTTGTCGAGGCCGTTCAGTTCAAAGCCTGCTGGGAATGATGTAATTGGTATTGACTTGGGTACCACCAATTCTTGTGTTGCTGTCATGGATGGGAAGAATCCAAAAGTTATTGAAAACTCAGAAGGTGCCAGGACCACACCATCGGTGGTTGCTTTCAATCAGAAAGGTGAACTCCTTGTAGGAACACCAGCAAAGAGACAGGCAGTGACGAATCCAACAAATACTGTGTTTGGAACCAAACGTCTGATTGGTAGACGCTTTGATGACCCTCAGACACAGAAGGAAATGAAGATGGTGCCATACAAAATAGTCAGAGCTCCAAATGGAGATGCTTGGGTTGAAGCAAATGGTCAGCAGTACTCACCAAGTCAGATCGGTGCTTTTGTCCTAACAAAGATGAAGGAAACTGCTGAGGCCTACCTTGGAAAGAGTGTGTCTAAGGCTGTGATTACTGTTCCTGCTTATTTCAATGATGCACAGAGACAGGCAACAAAGGATGCTGGCAGGATTGCTGGTTTGGATGTTCTTAGAATTATCAATGAGCCCACTGCTGCTGCACTTTCTTATGGAATGAACAATAAGGAGGGCCTTATTGCTGTCTTTGATCTTGGTGGTGGCACATTCGATGTGTCCATCTTGGAGATATCCAATGGTGTTTTTGAGGTGAAAGCAACAAATGGTGACACATTCTTGGGTGGAGAGGATTTTGACAATGCTCTTTTGGACTTCCTAGTGAGCGAGTTCAAGCGAAGTGAGGGAATTGACCTTACAAAGGACAGGCTTGCCTTGCAGAGGCTTAGAGAAGCTGCAGAAAAGGCGAAGATCGAACTATCATCTACATCTCAGACTGAAATTAACCTGCCATTTATCACTGCTGATGCAACTGGTGCAAAGCATCTGAACATCACTTTGACGAGGTCGAAGTTTGAAAGTCTTGTCAATCATTTAATTGAAAGGACCAAGGCCCCATGTAAAAATTGTTTGAAGGATGCCAGTATTTCTATCAAAGAAGTGGATGAAGTGCTTTTAGTTGGTGGAATGACTCGTGTTCCAAAGGTGCAAGACGTTGTCACAGAAATTTTCGGAAAGAGCCCCAGCAAAGGAGTGAATCCTGATGAAGCGGTTGCTATGGGAGCTGCAATTCAGGGTGGCATTCTTCGTGGTGATGTCAAAGAATTGCTTCTTCTGGATGTTACCCCACTATCACTTGGTATCGAGACACTTGGTGGTATCTTTACAAGGTTAATCAGTCGGAACACTACCATTCCAACTAAGAAGAGTCAGGTGTTCTCTACCGCAGCAGACAATCAGACTCAGGTCGGTATCAAGGTATTGCAAGGTGAGAGGGAAATGGCTTCTGACAACAAGCTCCTAGGGGAGTTTGAGTTGGTTGGAATTCCTCCTGCTCCAAGAGGAATGCCTCAAATTGAGGTGACATTTGACATCGACGCCAATGGCATTGTTACTGTCTCTGCCAAGGACAAGTCCACTGGTAAAGAACAACAAATCACCATTCGATCATCTGGAGGACTCTCAGAAGATGAAATTGACAAAATGGTCAAGGAAGCAGAGCTACACGCCCAGAAGGATCAAGAGAGAAAAGCTCTTATTGACATCAGAAACAGTGCAGATACTACCATCTACAGCATCGAGAAGAGCTTGGGCGAGTACAGAGAGAAAATACCTAGCGAGGTTGCCAAAGAAATCGAGGATGCAGTGGCTGACTTGAGGAAGGCAATGTCAGAAGACAACCTTGAAGAGATCAAGTCAAAACTCGATGCTGCAAACAAAGCTGTGTCCAAGATTGGACAGCATATGGCTGGTGGTTCAGGTGGTGGTGGTGCTTCTGGAGGACCTCAGGGTGGCGAACAAGCTTCTGAAGCCGAGTATGAAGAGGTGAAGAAATAA 2043 45.77 MATGVLLRSLRRRDLASSSLSAYRSLTSNAKPSWGNSHLSQSWASLSRPFSSKPAGNDVIGIDLGTTNSCVAVMDGKNPKVIENSEGARTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTVFGTKRLIGRRFDDPQTQKEMKMVPYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAEAYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVLRIINEPTAAALSYGMNNKEGLIAVFDLGGGTFDVSILEISNGVFEVKATNGDTFLGGEDFDNALLDFLVSEFKRSEGIDLTKDRLALQRLREAAEKAKIELSSTSQTEINLPFITADATGAKHLNITLTRSKFESLVNHLIERTKAPCKNCLKDASISIKEVDEVLLVGGMTRVPKVQDVVTEIFGKSPSKGVNPDEAVAMGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLISRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMASDNKLLGEFELVGIPPAPRGMPQIEVTFDIDANGIVTVSAKDKSTGKEQQITIRSSGGLSEDEIDKMVKEAELHAQKDQERKALIDIRNSADTTIYSIEKSLGEYREKIPSEVAKEIEDAVADLRKAMSEDNLEEIKSKLDAANKAVSKIGQHMAGGSGGGGASGGPQGGEQASEAEYEEVKK 680
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 23486000 23489413 - CrPI670011_10g011400.1 Cre10g1140 510442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g1140 680 Hamap Chaperone protein DnaK [dnaK]. 56 678 IPR012725 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0051082(InterPro)
Cre10g1140 680 MobiDBLite consensus disorder prediction 648 680 - -
Cre10g1140 680 FunFam Molecular chaperone DnaK 556 655 - -
Cre10g1140 680 ProSitePatterns Heat shock hsp70 proteins family signature 2. 245 258 IPR018181 -
Cre10g1140 680 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 431 555 IPR029047 -
Cre10g1140 680 PRINTS 70kDa heat shock protein signature 414 434 - -
Cre10g1140 680 PRINTS 70kDa heat shock protein signature 383 399 - -
Cre10g1140 680 PRINTS 70kDa heat shock protein signature 251 261 - -
Cre10g1140 680 PRINTS 70kDa heat shock protein signature 109 117 - -
Cre10g1140 680 PRINTS 70kDa heat shock protein signature 193 213 - -
Cre10g1140 680 PRINTS 70kDa heat shock protein signature 86 98 - -
Cre10g1140 680 PRINTS 70kDa heat shock protein signature 437 456 - -
Cre10g1140 680 PRINTS 70kDa heat shock protein signature 58 71 - -
Cre10g1140 680 PRINTS 70kDa heat shock protein signature 518 534 - -
Cre10g1140 680 Pfam Hsp70 protein 59 651 IPR013126 GO:0005524(InterPro)|GO:0140662(InterPro)
Cre10g1140 680 Gene3D - 556 653 IPR029048 -
Cre10g1140 680 ProSitePatterns Heat shock hsp70 proteins family signature 1. 62 69 IPR018181 -
Cre10g1140 680 Coils Coil 611 643 - -
Cre10g1140 680 SUPERFAMILY Actin-like ATPase domain 59 239 IPR043129 -
Cre10g1140 680 CDD HSPA9-like_NBD 56 431 - -
Cre10g1140 680 FunFam Heat shock protein 9 122 173 - -
Cre10g1140 680 FunFam Chaperone protein HscA homolog 242 298 - -
Cre10g1140 680 SUPERFAMILY Actin-like ATPase domain 240 431 IPR043129 -
Cre10g1140 680 PANTHER HEAT SHOCK PROTEIN 70KDA 59 614 IPR013126 GO:0005524(InterPro)|GO:0005737(PANTHER)|GO:0005739(PANTHER)|GO:0140662(InterPro)
Cre10g1140 680 NCBIfam molecular chaperone DnaK 59 651 IPR012725 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0051082(InterPro)
Cre10g1140 680 ProSitePatterns Heat shock hsp70 proteins family signature 3. 386 400 IPR018181 -
Cre10g1140 680 FunFam Chaperone protein DnaK HSP70 427 610 - -
Cre10g1140 680 Gene3D - 60 428 - -
Cre10g1140 680 FunFam Molecular chaperone DnaK 60 241 - -
Cre10g1140 680 Coils Coil 301 328 - -
Cre10g1140 680 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 583 659 IPR029048 -
Cre10g1140 680 Gene3D Actin; Chain A, domain 4 278 365 - -
Cre10g1140 680 FunFam Molecular chaperone DnaK 278 365 - -
Cre10g1140 680 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 433 589 IPR029047 -
Cre10g1140 680 Gene3D - 235 415 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre09g0959 Cre-Chr9:9833557 Cre10g1140 Cre-Chr10:23486000 1.10E-183 dispersed
Cre10g1140 Cre-Chr10:23486000 Cre11g1563 Cre-Chr11:25299857 2.90E-157 dispersed
Cre10g1140 Cre-Chr10:23486000 Cre01g0475 Cre-Chr1:4103455 8.30E-157 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g1140 K04043 - csv:101216102 1239.17