Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g1145 ATGCCAAAAATTTGCAAGAAACAAGACCCCAGTTGGAGTTCCATGGTTTATGAAAGAAGGGCACAAGGAGGTATCCTTGCTTTATTTAGCATAAGATCGATTACTGATCGCTACAACAAGATGAAAGACGAGCAAAATCAGCTAATGAACTCTGTTTCAGAACTCCAGTTTTGGAAAAGAGAGGCAGCTGCTTTGAAGCAACAACTGCATTACTTGCAAGAATGTCACAGACAATTGATGGGTGAAGAACTATCTGGCCTGAGTGTCAAAGATCTACAAAATCTGGAAAGCCAGTTGGAAATGAGTTTGAAAGGTGTCCGTGTGAAGAAGGAAAAGATTTTAAGCGACGAAATTACTGAACTAAGACAGAAGGGAAATCATATGCATCAAGAAAATCTGGAACTCTACAAGAAATTAGATATGATTCGTAAGGAAAATGCAGAACTGCAAATGAAGGTCTATGGACCAATGGAAGTGGATAAAACGAGCAGTAGCTCAGTTCATCAATTCACTATCACGAATAGATACAGTATGCATGCTCCCGTTCATCTACAGCTAAGACAGCCACAACCACAAAACAATGAAACACCAGTACCAGGGATAAAGCTGGGGTATGTTCTAGCAATCTGTGTTCATGACATATGA 645 39.84 MPKICKKQDPSWSSMVYERRAQGGILALFSIRSITDRYNKMKDEQNQLMNSVSELQFWKREAAALKQQLHYLQECHRQLMGEELSGLSVKDLQNLESQLEMSLKGVRVKKEKILSDEITELRQKGNHMHQENLELYKKLDMIRKENAELQMKVYGPMEVDKTSSSSVHQFTITNRYSMHAPVHLQLRQPQPQNNETPVPGIKLGYVLAICVHDI 214
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 23605955 23613930 - CrPI670011_10g011450.1 Cre10g1145 510447

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g1145 214 PANTHER SERUM RESPONSE FACTOR HOMOLOG 30 176 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cre10g1145 214 Pfam K-box region 52 139 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cre10g1145 214 ProSiteProfiles K-box domain profile. 55 145 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cre10g1145 214 Coils Coil 132 152 - -
Cre10g1145 214 Coils Coil 41 68 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g1145 K09264 - - csv:101203098 299.671
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre10g1145 Cre-Chr10:23605955 Cre08g1110 Cre-Chr8:24270314 9.40E-06 dispersed
Cre11g1893 Cre-Chr11:30683115 Cre10g1145 Cre-Chr10:23605955 1.50E-33 transposed
Cre10g1145 Cre-Chr10:23605955 Cre04g1442 Cre-Chr4:33243334 6.70E-28 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g838 . . . . . . . . . . . . . . . . . . . . . . . . Cla10g00943 Cam10g0965 Cec10g1000 Cco10g0961 Clacu10g0988 Cmu10g1771 Cre10g1145 . . . Cone10ag1087 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi03g00982 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000442 3 7 2 1 3 2 5 3 3 3 4 3 5 2 3 8 4 5 5 4 3 3 3 3 3 3 3 9 5 2 112