Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cre10g1158 | ATGTCCCGTTCTCTCCTCCGAGCTTTTCCTTTATCCACCATTCGCCCCAAGCCTGCTCAATTTCTCCCCATCTTCCATCACATTTCCCATCTCCGTCTTGCCAAATCTGTTTCCAGAACTCAGAGACCTGTTTCCTCATTTTCCGCTTCCGCCACTCATCCGCCTTCCTCCGCCGCCGAAACCATCGTTCCCACTTCGAATTCTCACTCGCCTTTTAAAGACTCTCTTCAGTGGATCAATCGTACGGCGTTCTGTGGTGAATTGTCGGTTGACGATGTTGGGAAGCGGGTTCGGCTGTGTGGTTGGGTTGCTCTGCATAGGGTTCATGGTGGTCTGACGTTTCTCAATCTTAGAGACCACAGTGGTATTGTTCAGGTGACTACGCTTCCCAACGAGTTTCCAGATGCTCATTCGACTATTAACGACTTGCGGCTTGAGTATGTTGTTGCTGTAGAAGGCACTGTTCGGTCTCGGCCTGGTGATTCAGTTAATGTAAAAATGAAAACTGGCTTGATAGAGGTTGCTGCAGAGCATGTTCAAGTATTAAATTCTGTTGGATCAAAGTTGCCCTTTTTAGTTACAACTGCTGATGATGCAAAGGATTCTGCTAAAGAGGAAATTCGACTGAGGTACCGGTACCTTGATCTACGAAGGAAGCAAATGAATTTTAACATAATGCTTCGTCATAGAGTGGTGAAGCTCATTCGAAGATATTTAGAGGATGTACATGGTTTTGTGGAGATTGAGACGCCAATACTTTCTAGATCTACTCCAGAAGGTGCTCGTGATTATCTCGTGCCGTCTAGAGTTCAGCCAGGAACATTTTTTGCTTTGCCTCAAAGTCCACAGCTGTTTAAGCAAATGTTGATGGTGTCTGGTTTTGATAAATATTATCAAATAGCAAGGTGTTTCCGAGATGAAGACCTAAGAGCTGACAGACAACCTGAGTTTACGCAACTGGATATGGAATTAGCATTTACAACTTTTGAAGACATGTTGAGACTCAATGAAGATTTGATTAGAAAGGTTTTTTGGGAAGTAAAAGGTGTTCAACTGCCAAATCCTTTCCCGAGGCTTACCTATGCTGAAGCGATGAGTCGATATGGATCAGATAGGCCAGATACAAGATTTGATCTTCAATTGAATGATGTATCTGATATTTTTGCAGATTCTCCATTTAAGGTTTTTGCAGACGCCTTGTCTAGTGGTGGAATCATCAAAGTGCTGTGTGTGCCCTCTGGTGCTAAAAGGTACTCAAACACAGCTCTTAAAAAGGGTGACATTTATATGGAGGCGATCAAATCTGGTGCAAAAGGATTACCTTTTCTGAAAGTTACAGACGATGGTGGCATTGAAGGGATTCCTGCCCTAGTATCAAGTTTGGATTCTGCAGGTAGAGAGGAATTTCTAAGTAGGTGCTCTGCTGGACCTGGTGATCTAGTCTTGTTTGCCGTGGGCCATCGAGTATTGGTTAATAAAACTCTAGATAGGCTTAGACTATATGTAGCTAATGACCTCAGTTTAGTCGACCATTCTAGGCATTCAATTTTGTGGGTGACTGATTTTCCAATGTTCGAATGGAATGATCTAGAGCAACGACTCGAGGCTTTGCACCACCCTTTCACAGCTCCAAACCCTGAAGACGTTGGTGATCTGCCCTCTGCTCGTGCCTTAGCTTATGATATGGTTTACAATGGAGTAGAGATTGGTGGAGGAAGTTTGAGAATTCATAAACGTGAAGTTCAAGAAAAGGTTTTGGAGATTGTGGGAATCTCTCCCGAACAGGCAGAAGCGAAGTTTGGTTATTTATTGGAGGCACTAGACATGGGTGCCCCGCCTCACGGGGGCATTGCTTATGGGTTGGACAGATTAGTCATGTTATTGGCAGATGCAACTTCCATTAGGGATGTCATAGCTTTCCCAAAGACAACAACAGCACAATGTGCCCTCACAAGAGCTCCTTCAGAAGTGGATCCCCAACAACTCAAGGATTTATCATATCAGAACCAATAA | 2013 | 43.96 | MSRSLLRAFPLSTIRPKPAQFLPIFHHISHLRLAKSVSRTQRPVSSFSASATHPPSSAAETIVPTSNSHSPFKDSLQWINRTAFCGELSVDDVGKRVRLCGWVALHRVHGGLTFLNLRDHSGIVQVTTLPNEFPDAHSTINDLRLEYVVAVEGTVRSRPGDSVNVKMKTGLIEVAAEHVQVLNSVGSKLPFLVTTADDAKDSAKEEIRLRYRYLDLRRKQMNFNIMLRHRVVKLIRRYLEDVHGFVEIETPILSRSTPEGARDYLVPSRVQPGTFFALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTTFEDMLRLNEDLIRKVFWEVKGVQLPNPFPRLTYAEAMSRYGSDRPDTRFDLQLNDVSDIFADSPFKVFADALSSGGIIKVLCVPSGAKRYSNTALKKGDIYMEAIKSGAKGLPFLKVTDDGGIEGIPALVSSLDSAGREEFLSRCSAGPGDLVLFAVGHRVLVNKTLDRLRLYVANDLSLVDHSRHSILWVTDFPMFEWNDLEQRLEALHHPFTAPNPEDVGDLPSARALAYDMVYNGVEIGGGSLRIHKREVQEKVLEIVGISPEQAEAKFGYLLEALDMGAPPHGGIAYGLDRLVMLLADATSIRDVIAFPKTTTAQCALTRAPSEVDPQQLKDLSYQNQ | 670 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 23840880 | 23849009 | - | CrPI670011_10g011580.1 | Cre10g1158 | 510460 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cre10g1158 | 670 | Pfam | GAD domain | 396 | 495 | IPR029351 | - | |
| Cre10g1158 | 670 | SUPERFAMILY | Nucleic acid-binding proteins | 81 | 183 | IPR012340 | - | |
| Cre10g1158 | 670 | MobiDBLite | consensus disorder prediction | 44 | 66 | - | - | |
| Cre10g1158 | 670 | NCBIfam | aspartate--tRNA ligase | 80 | 668 | IPR004524 | GO:0005524(InterPro)|GO:0016874(InterPro) | |
| Cre10g1158 | 670 | CDD | AspRS_core | 225 | 644 | IPR047090 | - | |
| Cre10g1158 | 670 | CDD | EcAspRS_like_N | 81 | 221 | IPR047089 | - | |
| Cre10g1158 | 670 | Gene3D | - | 360 | 509 | IPR004115 | GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro) | |
| Cre10g1158 | 670 | Gene3D | Bira Bifunctional Protein; Domain 2 | 199 | 665 | IPR045864 | - | |
| Cre10g1158 | 670 | PANTHER | ASPARTYL/LYSYL-TRNA SYNTHETASE | 65 | 644 | - | GO:0004815(PANTHER)|GO:0005739(PANTHER)|GO:0006422(PANTHER) | |
| Cre10g1158 | 670 | Gene3D | - | 73 | 185 | IPR012340 | - | |
| Cre10g1158 | 670 | Pfam | tRNA synthetases class II (D, K and N) | 204 | 643 | IPR004364 | GO:0000166(InterPro)|GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0006418(InterPro) | |
| Cre10g1158 | 670 | PRINTS | Aspartyl-tRNA synthetase signature | 278 | 290 | IPR002312 | GO:0000166(InterPro)|GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0006418(InterPro) | |
| Cre10g1158 | 670 | PRINTS | Aspartyl-tRNA synthetase signature | 560 | 576 | IPR002312 | GO:0000166(InterPro)|GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0006418(InterPro) | |
| Cre10g1158 | 670 | PRINTS | Aspartyl-tRNA synthetase signature | 604 | 618 | IPR002312 | GO:0000166(InterPro)|GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0006418(InterPro) | |
| Cre10g1158 | 670 | PRINTS | Aspartyl-tRNA synthetase signature | 295 | 308 | IPR002312 | GO:0000166(InterPro)|GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0006418(InterPro) | |
| Cre10g1158 | 670 | ProSiteProfiles | Aminoacyl-transfer RNA synthetases class-II family profile. | 227 | 641 | IPR006195 | - | |
| Cre10g1158 | 670 | SUPERFAMILY | GAD domain-like | 377 | 509 | IPR004115 | GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro) | |
| Cre10g1158 | 670 | SUPERFAMILY | Class II aaRS and biotin synthetases | 205 | 643 | IPR045864 | - | |
| Cre10g1158 | 670 | Pfam | OB-fold nucleic acid binding domain | 97 | 171 | IPR004365 | GO:0003676(InterPro) | |
| Cre10g1158 | 670 | Hamap | Aspartate--tRNA(Asp/Asn) ligase [aspS]. | 80 | 670 | IPR004524 | GO:0005524(InterPro)|GO:0016874(InterPro) |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cre10g1158 | K01876 | - | - | csv:101202872 | 1246.88 |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi3g777 | . | Blo03g00057 | Bda06g01152 | . | Bpe07g00295 | . | . | Bma12g00306 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Cla10g00957 | Cam10g0980 | Cec10g1011 | Cco10g0974 | Clacu10g1002 | Cmu10g1784 | Cre10g1158 | . | . | Cone3ag1050 | Cone10ag1066 | . | . | . | . | . | . | . | . | . | . | . | . | Sed07g1150 | Cmo04g00458 | Cmo16g00319 | . | . | . | . | Cpe14g00249 | Cpe01g00384 | Bhi11g01096 | Tan01g0600 | Cmetu07g2217 | . | . | Mch10g0404 | . | . | . | . | . | . | . | . | Lsi03g01002 | . | . | Cme07g02215 |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0009118 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 34 |