Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g1160 ATGGCGGAGGTCAATGCTATCATGATTCCTGCTCATTTCAATTCTATTGCCAAAAACCCTGTGTTTGATGTGAAGCGTTCCGGTTTTGGCATGCCGGTTATCGGTCCAGCAGTTTGGTGCAACAGGAGGAGGACGAAGGGGAGAGTTGGAAATGGAGTGAAAGCGACAATGCAGGTGGATTTGGAGGATGAGGAGAGGTTGAAAAGATTGGAAGGTTTAGAGGCGACACTAGGGCTTGATGTTGTAGCGGAGAGGGAACTGAAGGAGAAAGGGTTTTTGGGGATGAGGAAGACGAAGCTTGTATGTACTATCGGTCCAGCGTGTAATGCGATTGAGGATTTGGAGAAACTAGCGTTGGAAGGTATGAACATTGCTAGATTGAATATGTGCCATAACTCGAGGGAGTGGCATTGCGATGTCATTAAGAAGATTAAGAAGTTAAATTTGGAGAAAGGATTTTGTATTTCGGTTATGATTGATACTGAAGGAAGTCAGATTCATGTGGTTGATCATGGAGCTCCTTCCTCTGTAAAAGTAGAGGATGGTTCAATCTGGTTGTTTACTGCTGAGAAATTCGAGGGTTCTCGTCCATTCACTGTGCAGGCGACCTATGAAGGTTTCTCCGAAGGTATCCAAGTGGGCGATTCAATTGTAATTGATGGGGGAATGGTAGGCTTTGAAGTTATTGAAAAGATTGGGAATGATTTAAGTTGCAGGTGCACAGACCCTGGCTTATTTCTTCCTCGAGCGAAGTGCAGCTTTTGGAGAGATGGGAGGCTTGTTGTGAGGAATCACGAGTCTCCCACGCTGTCGAGTAAGGATTGGTCGGACATTGAATTTGGCATTTCGGAAGGCGTCGACTTCATTGCCCTTTCCTTTGTGAACAGTGCAGATCCTGTCAAGCATCTAAAGAACTACCTTTTAACAAAATCAGCAAAATCCGTAAGGGTATTGGCTAAGATTGAAAGCTTGGAGTCCCTTCAAAATCTGGAAGAAATTATAGAGGCCTCTGATGGAATCATGGTGGCTCGAGGGGATCTTGGGGTCGAAATTCCGCTCGAGCAGATACCAGCAGTGCAAGAGGAAATAATTAGTGTCTGTAGGGAACTGAACAAACCAGTGATCATAGCTTCTCAACTTCTAGAGTCGATGGTTGAATATCCTACTCCAACACGTGCTGAGGTTGCAGATGTTTCTGAGGCTGTCCGACAATATGCTGATGCATTGATGCTATCTGGGGAGTCTGCCATAGGATCATACGGACAGAAAGCGCTTTCGGTTCTACAGATGGCCAGCAGCCGAATGGAGTTATGGAGTCGTGAAGAAAATAGGAAAAATTTCCTTCCCCAGCATCAACTTGGGGTGTCATTGCATGATCGCATTGCAGAAGAAATTTGCAATTCTGCAGCTGAATTGGCTAACAGACTTTCAGTAGACGCCATATTTGTGCTGACAAATCAAGGACATATGGCATCTCTCCTATCCCAAAACCGCCCAAGCCCGCCAATATTTGCATTAACCGATGATGATAGCACAAGAATGGCTTTGAATCTACAATGGGGAGTGTTTCCTCTGCGCATTGACCTCTCAGAAGACATTGAAGCAAACATCTCAAGAGGGATCGAGCTTGTGAAATCAAAGGGATTGGTGAAACAGGGGGACTCTGTGCTGGTGGTCTTAGAGATCTCACCAGCTCGAGCTGCATCAATGGCGTCCCAATCAATCCAGCTGAAAACCATCGTGTAG 1746 45.59 MAEVNAIMIPAHFNSIAKNPVFDVKRSGFGMPVIGPAVWCNRRRTKGRVGNGVKATMQVDLEDEERLKRLEGLEATLGLDVVAERELKEKGFLGMRKTKLVCTIGPACNAIEDLEKLALEGMNIARLNMCHNSREWHCDVIKKIKKLNLEKGFCISVMIDTEGSQIHVVDHGAPSSVKVEDGSIWLFTAEKFEGSRPFTVQATYEGFSEGIQVGDSIVIDGGMVGFEVIEKIGNDLSCRCTDPGLFLPRAKCSFWRDGRLVVRNHESPTLSSKDWSDIEFGISEGVDFIALSFVNSADPVKHLKNYLLTKSAKSVRVLAKIESLESLQNLEEIIEASDGIMVARGDLGVEIPLEQIPAVQEEIISVCRELNKPVIIASQLLESMVEYPTPTRAEVADVSEAVRQYADALMLSGESAIGSYGQKALSVLQMASSRMELWSREENRKNFLPQHQLGVSLHDRIAEEICNSAAELANRLSVDAIFVLTNQGHMASLLSQNRPSPPIFALTDDDSTRMALNLQWGVFPLRIDLSEDIEANISRGIELVKSKGLVKQGDSVLVVLEISPARAASMASQSIQLKTIV 581
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 23871355 23875098 + CrPI670011_10g011600.1 Cre10g1160 510462

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g1160 581 ProSitePatterns Pyruvate kinase active site signature. 315 327 IPR018209 GO:0004743(InterPro)|GO:0006096(InterPro)
Cre10g1160 581 FunFam Pyruvate kinase 269 435 - -
Cre10g1160 581 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 90 436 IPR015813 GO:0003824(InterPro)
Cre10g1160 581 PRINTS Pyruvate kinase family signature 317 343 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Cre10g1160 581 PRINTS Pyruvate kinase family signature 369 393 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Cre10g1160 581 PRINTS Pyruvate kinase family signature 413 429 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Cre10g1160 581 PRINTS Pyruvate kinase family signature 344 368 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Cre10g1160 581 PRINTS Pyruvate kinase family signature 286 300 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Cre10g1160 581 PRINTS Pyruvate kinase family signature 153 169 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Cre10g1160 581 PRINTS Pyruvate kinase family signature 394 412 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Cre10g1160 581 Pfam Pyruvate kinase, alpha/beta domain 463 560 IPR015795 -
Cre10g1160 581 Gene3D - 436 560 IPR036918 -
Cre10g1160 581 SUPERFAMILY PK C-terminal domain-like 459 561 IPR036918 -
Cre10g1160 581 Gene3D - 96 435 IPR040442 -
Cre10g1160 581 Pfam Pyruvate kinase, barrel domain 95 424 IPR015793 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Cre10g1160 581 NCBIfam pyruvate kinase 96 576 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Cre10g1160 581 SUPERFAMILY PK beta-barrel domain-like 166 253 IPR011037 -
Cre10g1160 581 PANTHER PYRUVATE KINASE 76 561 IPR001697 GO:0000287(InterPro)|GO:0004743(PANTHER)|GO:0004743(InterPro)|GO:0005737(PANTHER)|GO:0006096(InterPro)|GO:0006096(PANTHER)|GO:0030955(InterPro)
Cre10g1160 581 Gene3D - 164 268 IPR015806 GO:0004743(InterPro)|GO:0006096(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g1160 K00873 - - csv:101220786 1040.02
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre09g1183 Cre-Chr9:13894027 Cre10g1160 Cre-Chr10:23871355 1.50E-83 dispersed
Cre10g1160 Cre-Chr10:23871355 Cre11g1713 Cre-Chr11:28766560 9.30E-56 dispersed
Cre10g1160 Cre-Chr10:23871355 Cre06g1405 Cre-Chr6:8256765 1.10E-162 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g773 . . . . . . . . . . . . . . . . . . . . . . . . Cla10g00959 Cam10g0982 Cec10g1013 . Clacu10g1004 Cmu10g1787 Cre10g1160 . . . . . . . . . . . . . . . . Sed13g0418 Cmo04g00460 Cmo16g00321 . . . . Cpe14g00251 Cpe01g00386 Bhi11g01099 Tan01g0602 Cmetu07g0067 . . Mch10g0406 . . . . . . . . Lsi03g01004 . . Cme07g02213
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012138 0 1 1 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 1 1 1 30