Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g1170 ATGTCTCTCTCTCCTGACCATTCCGCCGCTTCTTCCTCCTCCTCCGGCGCCGGAAACCACACTCCCGCGGACTTCCTCTGTTCCACCGCGGCCGACTTCCCGATCTCCGATGACTCCGCCATCTTCAATCTTCTTCAATCGGAGCTCGACCACATGCCCCGCCGCGACTACGTCCGCCGGTGCCGTGACCAGTCGATCGACGTCACCGCCCGTCAAGACTCCATCAACTGGATCTTGAAGGTTCACGCGCACTACAATTTCAAACCAGTGACTGCGATTCTCTCCGTTAATTACTTCGATCGCTTCCTCTCCTCCAATTTCCTTCCACGGCGGAATGTATGGGCGTTTCAGCTTCTATCGGTGGCGTGTTTGTCTTTAGCGGCGAAAATGGAGGAACCTCAAGTTCCATTGATTTTGGACCTTCAAATCTTTGAACCTAAGTTCGTCTTCGAGCCCAAAACGGTTCAGAGAATGGAGCTTTGGGTTATGTCTATTCTCAATTGGAGATTACGCGCCGTCACGCCTTTCGATTTTCTCCACCACTTCATCTCCGATCTTCCTTCTTCTTCCGCCGCAGACGGCGGTGATGGCGACGGTGACGACTCTCATCGCCTCTTCTCAACTACTTCCGATCTCATTCTCAGCACCACTCGCGTGATCGATTTCTTGGGGTTCCCGCCGTCCACCATTGCTGCCGCTGCCGTTCTCTGCGCCGCTGGTGAACGGTTGGATTCTCCGGCGGGTTCTAGCCATTTCTTTGCCGCGAACAGAGTCGAAATGGTGAGAAGCTGTCACCAACTAATGGAGGAGTATGTGATTGACACGTGTCCAGCAGAACTCCGAAAACAGCGGACGGGAGGAGCCGAGCAGCCGGCGCCACCGAGTCCAGTCGGCGTGCTCGACGCGGCTGCATGCAGTAGCTGTGACACACACTTGGACAATCCCGGCTCCACCAGCCACGAAGCCCCAGCCGAGCCGCCGACAAAGAGGCTTCGCTCCTCTGCGCCGGATGTACAGGAGCAGTAG 1026 56.24 MSLSPDHSAASSSSSGAGNHTPADFLCSTAADFPISDDSAIFNLLQSELDHMPRRDYVRRCRDQSIDVTARQDSINWILKVHAHYNFKPVTAILSVNYFDRFLSSNFLPRRNVWAFQLLSVACLSLAAKMEEPQVPLILDLQIFEPKFVFEPKTVQRMELWVMSILNWRLRAVTPFDFLHHFISDLPSSSAADGGDGDGDDSHRLFSTTSDLILSTTRVIDFLGFPPSTIAAAAVLCAAGERLDSPAGSSHFFAANRVEMVRSCHQLMEEYVIDTCPAELRKQRTGGAEQPAPPSPVGVLDAAACSSCDTHLDNPGSTSHEAPAEPPTKRLRSSAPDVQEQ 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 24034506 24037808 - CrPI670011_10g011700.1 Cre10g1170 510472

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g1170 341 PANTHER CYCLINS 38 267 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cre10g1170 341 ProSitePatterns Cyclins signature. 71 102 IPR048258 -
Cre10g1170 341 MobiDBLite consensus disorder prediction 308 341 - -
Cre10g1170 341 SMART cyclin_7 76 164 IPR013763 -
Cre10g1170 341 SUPERFAMILY Cyclin-like 34 170 IPR036915 -
Cre10g1170 341 Gene3D - 43 246 - -
Cre10g1170 341 CDD CYCLIN_AtCycD-like_rpt2 173 268 - -
Cre10g1170 341 FunFam D2/4-type cyclin 54 169 - -
Cre10g1170 341 CDD CYCLIN_AtCycD-like_rpt1 70 168 - -
Cre10g1170 341 FunFam D6-type cyclin 170 266 - -
Cre10g1170 341 SMART Cyclin_C_2 173 308 IPR004367 -
Cre10g1170 341 Gene3D - 54 171 - -
Cre10g1170 341 Pfam Cyclin, C-terminal domain 173 273 IPR004367 -
Cre10g1170 341 Pfam Cyclin, N-terminal domain 43 171 IPR006671 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g1170 K18810 - - csv:101219121 537.339
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g2672 Cre-Chr5:37693389 Cre10g1170 Cre-Chr10:24034506 7.70E-54 dispersed
Cre08g1092 Cre-Chr8:24046681 Cre10g1170 Cre-Chr10:24034506 4.40E-49 dispersed
Cre08g1559 Cre-Chr8:28237832 Cre10g1170 Cre-Chr10:24034506 5.30E-30 dispersed
Cre10g1170 Cre-Chr10:24034506 Cre04g1465 Cre-Chr4:33446872 1.90E-53 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g725 Blo02g00926 Blo03g00066 . . Bpe07g00284 . Bma05g00646 . . . . . . . . . . . . . . . . . Cla10g00969 Cam10g0993 Cec10g1023 Cco10g0985 Clacu10g1013 Cmu10g1798 Cre10g1170 . . Cone3ag1037 Cone10ag1053 . . . . . . . . . Bpe05g00467 . . Sed06g1605 Cmo04g00470 Cmo16g00330 . . . . Cpe14g00259 Cpe01g00393 Bhi11g01121 Tan01g0618 Cmetu10g0407 . Hepe07g0403 Mch10g0416 . . . . . . . . Lsi03g01011 . . Cme07g02202
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004759 1 1 2 2 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 40