Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g1176 ATGGGTGCTCCGAAGCAGAAATGGACTAGTGAAGAAGAAGCAGCCCTGAAGGCTGGAGTCGTTAAGCATGGAGCAGGAAAGTGGCGAACGATACTTAAGGATCCTGAATTCAGCAGTGTACTGTATCTTCGTTCAAATGTTGATCTCAAGGACAAGTGGAGGAATATGAGTGTCATGGCTAATGGCTGGGGATCCCGAGAGAAGGCCAGGTTAGCACTTAAGAGATTACATGCTCCTAAAAAAGATGAGAACACTGTGGCTCAAAGTGTTGCTATCCAGAGTGAAGACGAATTGCCAGAAGCGAAGTCTGTTTCTCTTTCCTCAGATGTCAAGCAGATAACTGGTCCAAAGCGATCTAATGTAAGAAAGGAAGAGGAGGAAGAAGACGAAGAAGAAGAAAAAGAAGTAGAAAGAATAGAGAGAGATGCAAGATATGATTGTCATAGGTTAGACAATCTTATAATTGAGGCAATTACTACCCTGAGGGAACCTGGTGGCTCTAATAAGACAAAGATTACCTCATATATAGAGGATCAATACTGGGCACCTCCAGACTTCAAGAGGTTGTTATCATCAAAATTGAAGTTCCTAACAGCTAGTCGTAAATTGGTCAAGGTTAAACGAAAATATAGGCTTCCTCCGGTGGCACCTTCAGAGAGAAGGAGCTCTATGTTATTGTTGGACGACCAGCAAAGAGCTTCTATGAGAGCTGACAAGGACGAAATGTGTATCCTTTCGAAAGCTCAAATCGATCTCGAATTAGCCAAGATGAGGACCATGACTTCCCAAGAGGCAGCGGCAGCTGCTGCTCGAGCAGTTGCAGAAGCAGAAGCAGCAATAGCAGAAGCAGAAGAGGCAGCAAGGGAAGCCGAGGCAGCTGAGGCTGATGCAGAAGCAGCCCAATCATTTGCAGAAGCTGCAATGAAGACACTGAAAGGAAGAAATCTCCCGAAGATGATGATCCGGGTTTGA 972 45.06 MGAPKQKWTSEEEAALKAGVVKHGAGKWRTILKDPEFSSVLYLRSNVDLKDKWRNMSVMANGWGSREKARLALKRLHAPKKDENTVAQSVAIQSEDELPEAKSVSLSSDVKQITGPKRSNVRKEEEEEDEEEEKEVERIERDARYDCHRLDNLIIEAITTLREPGGSNKTKITSYIEDQYWAPPDFKRLLSSKLKFLTASRKLVKVKRKYRLPPVAPSERRSSMLLLDDQQRASMRADKDEMCILSKAQIDLELAKMRTMTSQEAAAAAARAVAEAEAAIAEAEEAAREAEAAEADAEAAQSFAEAAMKTLKGRNLPKMMIRV 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 24181699 24187719 + CrPI670011_10g011760.1 Cre10g1176 510478

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g1176 323 PANTHER SINGLE MYB HISTONE 4 1 317 IPR044597 GO:0003691(InterPro)
Cre10g1176 323 Coils Coil 266 303 - -
Cre10g1176 323 FunFam Telomere repeat-binding factor 1 2 58 - -
Cre10g1176 323 CDD SANT_TRF 6 56 - -
Cre10g1176 323 Pfam linker histone H1 and H5 family 151 207 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Cre10g1176 323 SUPERFAMILY Homeodomain-like 2 70 IPR009057 -
Cre10g1176 323 Coils Coil 120 142 - -
Cre10g1176 323 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Cre10g1176 323 Gene3D - 2 59 - -
Cre10g1176 323 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Cre10g1176 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Cre10g1176 323 SMART sant 4 59 IPR001005 -
Cre10g1176 323 SUPERFAMILY Winged helix DNA-binding domain 146 220 IPR036390 -
Cre10g1176 323 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 146 214 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Cre10g1176 323 SMART h15plus2 143 209 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Cre10g1176 323 Gene3D - 146 222 IPR036388 -
Cre10g1176 323 MobiDBLite consensus disorder prediction 92 138 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g1176 K09422 - - csv:101218411 484.182
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g0437 Cre-Chr7:2068393 Cre10g1176 Cre-Chr10:24181699 3.50E-06 transposed
Cre10g1176 Cre-Chr10:24181699 Cre04g1384 Cre-Chr4:32653071 2.00E-44 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g722 . Blo03g00069 Bda06g01187 . Bpe07g00280 . . Bma12g00288 . . . . . . . . . . . . . . . . Cla10g00975 Cam10g0998 Cec10g1028 Cco10g0991 Clacu10g1019 Cmu10g1802 Cre10g1176 . . Cone8ag0167 Cone12ag0173 . . . . . . . . . . . . . Cmo04g00473 Cmo16g00332 . . . . Cpe14g00260 Cpe01g00396 Bhi11g01125 . . . . . . . . . . . . . Lsi03g01014 . . Cme07g02198
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre10g1176 . 1 322 Single Myb Histone (SMH) Gene Family AT1G49950 61.1 1.7e-77 286.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005794 2 4 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 2 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54522 PF00538 Linker_histone 1.70E-07 CL0123 Cre TF