Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g1176 ATGGGTGCTCCGAAGCAGAAATGGACTAGTGAAGAAGAAGCAGCCCTGAAGGCTGGAGTCGTTAAGCATGGAGCAGGAAAGTGGCGAACGATACTTAAGGATCCTGAATTCAGCAGTGTACTGTATCTTCGTTCAAATGTTGATCTCAAGGACAAGTGGAGGAATATGAGTGTCATGGCTAATGGCTGGGGATCCCGAGAGAAGGCCAGGTTAGCACTTAAGAGATTACATGCTCCTAAAAAAGATGAGAACACTGTGGCTCAAAGTGTTGCTATCCAGAGTGAAGACGAATTGCCAGAAGCGAAGTCTGTTTCTCTTTCCTCAGATGTCAAGCAGATAACTGGTCCAAAGCGATCTAATGTAAGAAAGGAAGAGGAGGAAGAAGACGAAGAAGAAGAAAAAGAAGTAGAAAGAATAGAGAGAGATGCAAGATATGATTGTCATAGGTTAGACAATCTTATAATTGAGGCAATTACTACCCTGAGGGAACCTGGTGGCTCTAATAAGACAAAGATTACCTCATATATAGAGGATCAATACTGGGCACCTCCAGACTTCAAGAGGTTGTTATCATCAAAATTGAAGTTCCTAACAGCTAGTCGTAAATTGGTCAAGGTTAAACGAAAATATAGGCTTCCTCCGGTGGCACCTTCAGAGAGAAGGAGCTCTATGTTATTGTTGGACGACCAGCAAAGAGCTTCTATGAGAGCTGACAAGGACGAAATGTGTATCCTTTCGAAAGCTCAAATCGATCTCGAATTAGCCAAGATGAGGACCATGACTTCCCAAGAGGCAGCGGCAGCTGCTGCTCGAGCAGTTGCAGAAGCAGAAGCAGCAATAGCAGAAGCAGAAGAGGCAGCAAGGGAAGCCGAGGCAGCTGAGGCTGATGCAGAAGCAGCCCAATCATTTGCAGAAGCTGCAATGAAGACACTGAAAGGAAGAAATCTCCCGAAGATGATGATCCGGGTTTGA 972 45.06 MGAPKQKWTSEEEAALKAGVVKHGAGKWRTILKDPEFSSVLYLRSNVDLKDKWRNMSVMANGWGSREKARLALKRLHAPKKDENTVAQSVAIQSEDELPEAKSVSLSSDVKQITGPKRSNVRKEEEEEDEEEEKEVERIERDARYDCHRLDNLIIEAITTLREPGGSNKTKITSYIEDQYWAPPDFKRLLSSKLKFLTASRKLVKVKRKYRLPPVAPSERRSSMLLLDDQQRASMRADKDEMCILSKAQIDLELAKMRTMTSQEAAAAAARAVAEAEAAIAEAEEAAREAEAAEADAEAAQSFAEAAMKTLKGRNLPKMMIRV 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 24181699 24187719 + CrPI670011_10g011760.1 Cre10g1176 510478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g1176 323 PANTHER SINGLE MYB HISTONE 4 1 317 IPR044597 GO:0003691(InterPro)
Cre10g1176 323 Coils Coil 266 303 - -
Cre10g1176 323 FunFam Telomere repeat-binding factor 1 2 58 - -
Cre10g1176 323 CDD SANT_TRF 6 56 - -
Cre10g1176 323 Pfam linker histone H1 and H5 family 151 207 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Cre10g1176 323 SUPERFAMILY Homeodomain-like 2 70 IPR009057 -
Cre10g1176 323 Coils Coil 120 142 - -
Cre10g1176 323 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Cre10g1176 323 Gene3D - 2 59 - -
Cre10g1176 323 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Cre10g1176 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Cre10g1176 323 SMART sant 4 59 IPR001005 -
Cre10g1176 323 SUPERFAMILY Winged helix DNA-binding domain 146 220 IPR036390 -
Cre10g1176 323 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 146 214 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Cre10g1176 323 SMART h15plus2 143 209 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Cre10g1176 323 Gene3D - 146 222 IPR036388 -
Cre10g1176 323 MobiDBLite consensus disorder prediction 92 138 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g0437 Cre-Chr7:2068393 Cre10g1176 Cre-Chr10:24181699 3.50E-06 transposed
Cre10g1176 Cre-Chr10:24181699 Cre04g1384 Cre-Chr4:32653071 2.00E-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54522 PF00538 Linker_histone 1.70E-07 CL0123 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g1176 K09422 - csv:101218411 484.182