Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g1196 ATGGAATCTATAGGAGCCATTTCAGAAAGAGAATGGATATCTCTTAGTGGAGCTTATACTGCTGAAGAGTCTGATTTCATGGCTAATTTGCTCAACAATTATTGTCTTCCAAATGAGCTAAATTCAGATTTAAGCTTGGAAATTCCATCTGCTTATTGGGTTTCTAATGAACCACCACCATCATTGACCATGGCAGCCATGGACGAACCTTCTTATTATTCTTCAGATGCTTCTGATTCTTCCAATATGTATGCCCTTCCACAAGCCAACAACAATAATCATCCTTACACTGTCACTGATTCTCACCCTCTTTGGTTGCCGAATAATGGTGCTTCTTTGTCCTTGGATTTCTCCATGGAGGATGTCCGGAATGCTAATTGCTTGGACGAAGATAACGGTTCGAATATCCGAAAAACAAGACAATGCAGGCTACAACACTCCCCTGCTGACCCTACTGACCCTGCTGCTACACTTGTTGTTGTCAATGGGAAGAGCTCACAACCGAAAAGACGAGCCGAGGACATGACGGTGGAAGAAGGTACGAGGGACGATAAAGTTGCACCGATGTCGTCGGTCAACAACAACTCGAGGAAGCGACCCCAAAGTTCAGTTGATGTCGAAAAGATGAAAAGGAGCCTGAGGGCACGGAAGAGCTCAAAGATTGCTTCAACTAGCTGCAATGAAGAGGATCACATTGTTAATCCCAATGGACAGTGCACGAGCAGTTTCAGCTCTGAGGATGACTGTAATGAACCTCAAGAAATCAATGGTGGAATCACTTCCAGCTCAACCTCAAATGGAAAGCCAAGAGCTAGTAGAGGCTCAGCCACAGACCCTCAAAGCCTCTATGCAAGGAAAAGAAGAGAAAGAATCAATGAAAGATTGAGAATCTTACAAAGCCTTGTCCCGAACGGCACAAAGGTTGATATCAGTACAATGCTTGAAGAAGCTGTTCAATATGTGAAGTTTTTGCAGCTTCAAATCAAGTTGTTGAGCTCCGATGATTTATGGATGTATGCACCAATTGCTTACAATGGAATGGACATTGGACTTAACTTGAAGCTGATGAAGCAAGACAATGCATCACAGTAG 1092 43.32 MESIGAISEREWISLSGAYTAEESDFMANLLNNYCLPNELNSDLSLEIPSAYWVSNEPPPSLTMAAMDEPSYYSSDASDSSNMYALPQANNNNHPYTVTDSHPLWLPNNGASLSLDFSMEDVRNANCLDEDNGSNIRKTRQCRLQHSPADPTDPAATLVVVNGKSSQPKRRAEDMTVEEGTRDDKVAPMSSVNNNSRKRPQSSVDVEKMKRSLRARKSSKIASTSCNEEDHIVNPNGQCTSSFSSEDDCNEPQEINGGITSSSTSNGKPRASRGSATDPQSLYARKRRERINERLRILQSLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLNLKLMKQDNASQ 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 24562922 24564683 - CrPI670011_10g011960.1 Cre10g1196 510498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g1196 363 SMART finulus 281 330 IPR011598 GO:0046983(InterPro)
Cre10g1196 363 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 275 340 IPR036638 GO:0046983(InterPro)
Cre10g1196 363 CDD bHLH_AtIND_like 276 338 - -
Cre10g1196 363 Gene3D - 277 333 IPR036638 GO:0046983(InterPro)
Cre10g1196 363 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 275 324 IPR011598 GO:0046983(InterPro)
Cre10g1196 363 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 93 347 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Cre10g1196 363 MobiDBLite consensus disorder prediction 167 185 - -
Cre10g1196 363 MobiDBLite consensus disorder prediction 142 281 - -
Cre10g1196 363 MobiDBLite consensus disorder prediction 218 279 - -
Cre10g1196 363 Pfam Helix-loop-helix DNA-binding domain 285 325 IPR011598 GO:0046983(InterPro)
Cre10g1196 363 FunFam Basic helix-loop-helix transcription factor 276 333 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g1159 Cre-Chr3:11919237 Cre10g1196 Cre-Chr10:24562922 2.30E-18 dispersed
Cre05g2237 Cre-Chr5:33985444 Cre10g1196 Cre-Chr10:24562922 1.70E-38 dispersed
Cre08g1586 Cre-Chr8:28404131 Cre10g1196 Cre-Chr10:24562922 1.90E-37 dispersed
Cre09g0034 Cre-Chr9:680963 Cre10g1196 Cre-Chr10:24562922 1.20E-12 dispersed
Cre10g1196 Cre-Chr10:24562922 Cre11g2070 Cre-Chr11:32485374 2.00E-08 dispersed
Cre10g1196 Cre-Chr10:24562922 Cre02g1031 Cre-Chr2:8027448 7.10E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54523 PF00010 HLH 7.70E-09 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g1196 - - - 0.0