Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g1197 ATGACAGCCGTCCCTCCTCCGGCTGCTGGCCGGGAGCTTTCAAATCCTCCCTCCGACGGCATTTCCAATCTCCGTTTCTCCAACCACAGTGATCACTTACTTGTTTCCTCTTGGGACAAGACTGTCCGCTTGTACGACGCCAGCGCCAACGTCCTCCGCGGTGAGTTCGTACATGGTGGTCCTGTCCTCGACTGTTGTTTCCACGACGATTCTTCTGGATTCAGTGCCAGTGTTGACAACACCGTCAGGAGACTTGTTTTCAACCATAATAAGGAGGACATATTAGGGAGGCATGATGCACCTGTGCGGTGCGTTGAGTATTCTTATGCGGCAGGTCAATTAATTACTGGCAGTTGGGATAAAACACTGAAGTGTTGGGATCCTAGAGGTGCAAGTGGGCAGGAACATACTCTCGTTGGAACATATCCTCAGCCTGAGCGTGTTTACTCACTTTCTCTTGTGGGGAATCGTTTAGTTGTAGCAACTGCTGGAAGGCATGTTAATGTCTACGACTTGAGAAACATGTCTCAACCCGAGCAAAGAAGGGAATCCTCGTTGAAATATCAGACTCGATGTGTGCGTTGTTATCCAAATGGAACAGGCTATGCTCTTAGTTCAGTTGAAGGACGAGTTGCTATGGAGTTTTTTGATCCCTCAGAGGCCAGTCAAGCCAAAAAGTATGCATTCAAATGTCACAGAAAATCAGAGGCTGGAAGGGACATAGTCTATCCGGTCAATGCCATTGCATTCCATCCTATCTACGGTACTTTTGCAACGGGAGGTTGTGATGGGTACGTAAATGTTTGGGATGGGAACAACAAGAAGAGGCTTTATCAGTATTCAAAATATCCAACAAGTATTGCAGCACTGTCATTTAGTAGAGATGGGCGGCTATTAGCTGTAGCCTCAAGTTACACATTTGAAGAGGGAGATAAACCCCACGAGCCAGATGCCATATATGTCCGCAGTGTAAATGAAATAGAAGTTAAGCCAAAGCCTAAAATTTCCTTGATTTACCCTAACATGTTAGTTAAACGTCAGTCCCCAGAGAGCAATTTTGGAAAAGCAAATTTTCATGATAGAGTGAGAGAAAGTGGAGGATGTGAGTTGGGTGAAGATCCAAGCAGGAATGGGGCCAAGAAGCTTTTCAGGCATGCAAAGACATCATACCATTGCAATAATTGGGCAACATCCAAAAGGGCTCTTTCTTTGGGGGGATTGAGGAAACTTGAAGCTCACTTCTTGCTTGTCAAGATGAAGTTCATGAAACTTGGATCAAAATCTGATAGCTTTCAGAATGATGGGACCAATGTTAGGTATGTTGTAGGTGAATTAGCAACAGACATCACTGTTATCGTAGGGGATGTCAAGTTTTACCTCCATAAGTTTCCCCTTCTGTCAAAGAGTGCTCACTTGCAGAAGTTGGTCACAGCTGCCACTGGGGAGCACAATGATGAAATATACATTCCAGAGATCCCGGGTGGTTCTGCAGCATTTGAGATATGTGCCAAATTCTGTTATGGGATGACCGTTACTCTTAATGCCTATAACGTAGTTGCAGCCCGTTGTGCTGCTGAATACCTAGGAATGCATGAGACAGTTGAAAAGGGAAACCTCACCTACAAAATCGACGTTTTCCTTAGTTCGAGCATCTTTCGTAGCTGGAAGGATTCAATCATTGTTCTTCAGTCCACAAAGGCGTTAATGCCATTATCTGAGGAACTGAAATTAGTAAGCAATTGCTTAGAATCTATTGCTGTGAAGGCCTCTGCTGATATTTCTAAAGTTGACTGGTCTTACACATATAACCGCAAGAAACTACCTGAGGAAAATGGGAACAATCCCAACTGGAATGGCGTCAGGAATCGTAGCGTGCCGAAGGACTGGTGGGTTGAGGATCTTTGTGAGCTAGAAATTGATGTATATAAGCGTGTTATAACGAGTATAAAAAACAAAGGAATAGTCCCTAACGATGTGATTGGAGAAGCACTGAAAGCTTATGCTTACCGTTATCTTCCAGGCTTTAGCAAAGGTGTGCTTCAATGTGGGGATCCACTGAAGTATCAGTCGGCAGTGTCGACAATTGTCTGGCTGTTACCTGCTGAGAAAGGCAGTGTTTCCAGTAGTTTCTTGTCCAAATTGCTGAAAGCGTCCATTTTCCTAGCATCTGGAGATGAGACCAAAGAAGAGCTTGTTCGACGAATGGGACAGCAGCTAGAGGAGGCTACAGTGAGCGATCTTTTGCTGCGAGCACCGGAAGGTGAAGCTACGACTTATGATGTTAATGCTGTACAGAAAATGGTGGAGGTGTTTCTGTTACAAGATCATAGTAGCGAAATCGAGTCACTTGAAGAGGGAAATGAGCTTCAGGAGCCAAGAGGGCCAGGGATTTTATCGGATGCTACTAAGTTGATGGTGGCAAAATTGATTGATGGTTACCTTGCTGAAGTTGCAAAAGATCCCAACCTATCATCAGTAAAGTTCATTGATCTTGCAGAGATGGTATCTTGCATCGCTCGGCCTTCACATGACGGGCTCTATCGAGCCATAGACATGTATCTGAAGGAACATCCAGGGATTGGCAAGAGTGATAAGAAGAGAATCTGCAAACTGATAGACTGCAAGAAACTATCCGCTGATGCGTGCATTCATGCTGTACAAAATGAACGGCTCCCTCTACGTATGGTTGTGCAGGTATTGTTTTTTGAGCAAGTCAGGGCCTCAGCATCGTCAGGCAGCAGCACTCCCGACCTACATAAAGGCATCAAGGATCTAACGAGTGGGTCTCACAGCAGCTCAAGATCAGCCACGACGAATCCCGAGGAAGATTGGGATGCTGTTGCCATGGCTGAGGAGCTCAAGGCTCTCAAAGGGGAGCTAGCTTCCTTGAGGCTTGCTACTGGTAAAGGAAGTAATGAGAGGAATGGAGATGGTAAAAATGGAATTGACAAAGCAGCTCTTAGTAAAATGAAAGGATTGCTCAAGTCAAAGAAGCTTTTCACAAAGCTATGGTCAAGCAAAGGAGGAGGATATGGCGAAAACAGCGGCTCGGATTCATCGGAGAGCCTTGGTTCTGCAAATCAGGAGGAAGCTAAGTCAACACCTTCCAGGAACAGAAGGCATTCAGTTTCTTAG 3135 45.26 MTAVPPPAAGRELSNPPSDGISNLRFSNHSDHLLVSSWDKTVRLYDASANVLRGEFVHGGPVLDCCFHDDSSGFSASVDNTVRRLVFNHNKEDILGRHDAPVRCVEYSYAAGQLITGSWDKTLKCWDPRGASGQEHTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNVYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDPSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGYVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGDKPHEPDAIYVRSVNEIEVKPKPKISLIYPNMLVKRQSPESNFGKANFHDRVRESGGCELGEDPSRNGAKKLFRHAKTSYHCNNWATSKRALSLGGLRKLEAHFLLVKMKFMKLGSKSDSFQNDGTNVRYVVGELATDITVIVGDVKFYLHKFPLLSKSAHLQKLVTAATGEHNDEIYIPEIPGGSAAFEICAKFCYGMTVTLNAYNVVAARCAAEYLGMHETVEKGNLTYKIDVFLSSSIFRSWKDSIIVLQSTKALMPLSEELKLVSNCLESIAVKASADISKVDWSYTYNRKKLPEENGNNPNWNGVRNRSVPKDWWVEDLCELEIDVYKRVITSIKNKGIVPNDVIGEALKAYAYRYLPGFSKGVLQCGDPLKYQSAVSTIVWLLPAEKGSVSSSFLSKLLKASIFLASGDETKEELVRRMGQQLEEATVSDLLLRAPEGEATTYDVNAVQKMVEVFLLQDHSSEIESLEEGNELQEPRGPGILSDATKLMVAKLIDGYLAEVAKDPNLSSVKFIDLAEMVSCIARPSHDGLYRAIDMYLKEHPGIGKSDKKRICKLIDCKKLSADACIHAVQNERLPLRMVVQVLFFEQVRASASSGSSTPDLHKGIKDLTSGSHSSSRSATTNPEEDWDAVAMAEELKALKGELASLRLATGKGSNERNGDGKNGIDKAALSKMKGLLKSKKLFTKLWSSKGGGYGENSGSDSSESLGSANQEEAKSTPSRNRRHSVS 1044
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 24593776 24607888 + CrPI670011_10g011970.1 Cre10g1197 510499

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g1197 1044 MobiDBLite consensus disorder prediction 910 942 - -
Cre10g1197 1044 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 95 127 - -
Cre10g1197 1044 MobiDBLite consensus disorder prediction 1007 1044 - -
Cre10g1197 1044 Coils Coil 946 966 - -
Cre10g1197 1044 Pfam WD domain, G-beta repeat 95 127 IPR001680 GO:0005515(InterPro)
Cre10g1197 1044 Pfam WD domain, G-beta repeat 58 83 IPR001680 GO:0005515(InterPro)
Cre10g1197 1044 Pfam WD domain, G-beta repeat 244 270 IPR001680 GO:0005515(InterPro)
Cre10g1197 1044 Pfam WD domain, G-beta repeat 18 46 IPR001680 GO:0005515(InterPro)
Cre10g1197 1044 ProSiteProfiles Trp-Asp (WD) repeats profile. 245 279 IPR001680 GO:0005515(InterPro)
Cre10g1197 1044 SMART WD40_4 135 171 IPR001680 GO:0005515(InterPro)
Cre10g1197 1044 SMART WD40_4 6 46 IPR001680 GO:0005515(InterPro)
Cre10g1197 1044 SMART WD40_4 88 127 IPR001680 GO:0005515(InterPro)
Cre10g1197 1044 SMART WD40_4 222 270 IPR001680 GO:0005515(InterPro)
Cre10g1197 1044 SMART WD40_4 49 86 IPR001680 GO:0005515(InterPro)
Cre10g1197 1044 Gene3D Potassium Channel Kv1.1; Chain A 426 539 IPR011333 -
Cre10g1197 1044 Pfam BTB/POZ domain 446 536 IPR000210 GO:0005515(InterPro)
Cre10g1197 1044 SUPERFAMILY WD40 repeat-like 17 304 IPR036322 GO:0005515(InterPro)
Cre10g1197 1044 Gene3D - 7 335 IPR015943 GO:0005515(InterPro)
Cre10g1197 1044 ProSiteProfiles NPH3 domain profile. 628 906 IPR027356 -
Cre10g1197 1044 MobiDBLite consensus disorder prediction 1008 1032 - -
Cre10g1197 1044 SUPERFAMILY POZ domain 440 535 IPR011333 -
Cre10g1197 1044 ProSiteProfiles Trp-Asp (WD) repeats profile. 95 127 IPR001680 GO:0005515(InterPro)
Cre10g1197 1044 Pfam NPH3 family 628 882 IPR027356 -
Cre10g1197 1044 PANTHER OS12G0117600 PROTEIN 444 967 IPR043454 -
Cre10g1197 1044 ProSiteProfiles BTB domain profile. 447 515 IPR000210 GO:0005515(InterPro)
Cre10g1197 1044 FunFam Mitotic checkpoint protein bub3, putative 7 334 - -
Cre10g1197 1044 MobiDBLite consensus disorder prediction 925 940 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g1197 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g2743 Cre-Chr5:38287778 Cre10g1197 Cre-Chr10:24593776 2.00E-123 dispersed
Cre08g1315 Cre-Chr8:26269302 Cre10g1197 Cre-Chr10:24593776 3.80E-149 dispersed
Cre10g1197 Cre-Chr10:24593776 Cre10g2142 Cre-Chr10:35990724 1.50E-88 dispersed
Cre01g1049 Cre-Chr1:17567219 Cre10g1197 Cre-Chr10:24593776 7.60E-95 transposed
Cre04g1736 Cre-Chr4:35455317 Cre10g1197 Cre-Chr10:24593776 2.90E-106 transposed
Cre06g2034 Cre-Chr6:28058117 Cre10g1197 Cre-Chr10:24593776 3.80E-12 transposed
Cre10g1197 Cre-Chr10:24593776 Cre04g1371 Cre-Chr4:32549157 3.70E-220 wgd
Cre10g1197 Cre-Chr10:24593776 Cre09g0589 Cre-Chr9:5587260 5.50E-83 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g693 Blo02g00933 Blo03g00074 Bda06g01203 Bda08g00675 Bpe07g00274 . . Bma12g00281 . . . . . . . . . . . . . . . . Cla10g01000 Cam10g1022 Cec10g1053 Cco10g1018 Clacu10g1040 Cmu10g1824 Cre10g1197 . . Cone3ag1025 Cone10ag1040 . . . . . . . . . Bpe05g00475 . . . Cmo04g00485 Cmo16g00344 . . . . Cpe14g00271 Cpe01g00406 Bhi11g01141 . . . . Mch10g0450 . . . . . . . . Lsi03g01029 . . Cme07g02176
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001152 3 7 3 2 3 2 2 2 2 2 2 2 3 2 2 3 2 4 3 2 2 2 2 2 2 2 2 8 2 2 79