Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g1333 ATGGCAGCCATGGCTCTTCCATCTACATTCACAGGAAAAGCTGTTCCTTTGAATGCACCGACCGAGCTCTCATCCTCGGTTCGCAGCAATGGTAGAGTCTCAATGAGAAGATCTGGAAAGCCAGCGGCTTCCTCAGGCAGCCCATGGTATGGTCCGGACCGTGTCAAGTACCTTGGACCATTCTCTGGTGAGCCTCCATCTTACCTCACAGGGGAATTCCCTGGTGATTACGGTTGGGACACTGCAGGTCTATCTGCCGATCCTGAGACCTTTGCCAAGAACCGAGAGCTCGAAGTGATTCACAGTAGATGGGCCATGCTTGGGGCTCTAGGATGTGTATTCCCAGAGCTTCTTTCCAGAAATGGAGTCAAGTTTGGTGAAGCAGTTTGGTTCAAGGCTGGTTCACAGATCTTCAGCGAGGGTGGCCTAGACTATCTTGGAAACCCAAGTCTTATTCATGCACAGAGTATTTTGGCCATTTGGGCATCTCAAGTAGTGCTAATGGGTGCAGTTGAAGGTTACCGTATTGCCGGAGGACCACTCGGAGAAGTTACCGATCCCATCTACCCAGGCGGTAGCTTTGATCCCCTCGGACTGGCTGATGATCCAGAGGCATTTGCAGAGCTTAAGGTGAAAGAACTTAAGAATGGCCGTCTTGCAATGTTTTCCATGTTCGGGTTTTTCGTACAAGCCATTGTAACAGGAAAGGGTCCTTTGGAGAACCTCGCAGATCATCTTGCTGATCCTGTCAACAACAATGCATGGGCTTATGCTACCAACTTTGTACCTGGGAAGTGA 798 50.0 MAAMALPSTFTGKAVPLNAPTELSSSVRSNGRVSMRRSGKPAASSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 26855449 26856246 - CrPI670011_10g013330.1 Cre10g1333 510635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g1333 265 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 9 265 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
Cre10g1333 265 MobiDBLite consensus disorder prediction 21 47 - -
Cre10g1333 265 Pfam Chlorophyll A-B binding protein 65 232 IPR022796 -
Cre10g1333 265 FunFam Chlorophyll a-b binding protein, chloroplastic 56 258 - -
Cre10g1333 265 SUPERFAMILY Chlorophyll a-b binding protein 48 262 - -
Cre10g1333 265 Gene3D Chlorophyll a/b binding protein domain 56 258 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g2049 Cre-Chr4:37724473 Cre10g1333 Cre-Chr10:26855449 5.40E-136 dispersed
Cre08g0169 Cre-Chr8:3848296 Cre10g1333 Cre-Chr10:26855449 8.90E-56 dispersed
Cre10g0841 Cre-Chr10:9175870 Cre10g1333 Cre-Chr10:26855449 7.20E-96 dispersed
Cre10g1333 Cre-Chr10:26855449 Cre11g2304 Cre-Chr11:34640981 4.20E-40 dispersed
Cre10g1333 Cre-Chr10:26855449 Cre04g2048 Cre-Chr4:37721756 2.10E-135 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g1333 K08912 - csv:101203342 528.865