Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g1337 ATGAGCTGCTTTAGCTGCTGCGAGGAAGATGGAATTCAGAAAGCAGCTGACAATGGAGGCATGTATGCAGGAAAGCAAAATACAGGAAACAATGGGGGTTATCAAAAACCCGAAGCTGCACCAGCAGTCACTCAAGCTGTCAAAATGCAACCAATATTAGTGCCTACCATACCTGTCGAAGAACTGTCAGAAGTAACAGACAACTTTGGAAATGATGCTTTGATTGGAGAGGGTTCATATGGGAGAGTATACTATGGGATGCTTAAAAATGGGCAGCCTGCTGCGATCAAGAAGTTAGATGCCAGCAAACAGCCTGATGATGAGTTTTTAGCACAGGTCTCCATGGTCTCAAGGCTGAAGCATGGAAATTTTGTTCAATTGCTTGGTTATTGCGTTGATGGGAGTTCCCGCATACTAGTATACGAGTATGCTTCCAATGGATCACTTCATGATATTCTTCATGGAAGAAAAGGAGTGAAAGGAGCACAACCAGGTCCCGTTCTATCATGGGCACAACGTGTGAAAATTGCTGTAGGGGCTGCTAGAGGACTCGAGTATTTGCATGAAAAGGCTGAGTCCCACATTATCCATCGTGATATTAAGTCCAGCAATGTACTCATCTTTGATGATGATGTTGCTAAAATTGCTGACTTTGATTTGTCCAATCAAGCTCCTGATATGGCAGCACGTCTTCACTCCACCCGTGTTCTTGGGACTTTTGGTTATCATGCTCCTGAATATGCTATGACTGGTCAATTGAACGCCAAGAGTGATGTATATAGCTTCGGCGTAGTCTTGCTTGAACTTTTGACAGGGAGAAAACCTGTAGATCCTACGCTACCACGAGGACAACAAAGTCTAGTTACTTGGGCTACACCAAAGCTGAGTGAAGATAAAGTTAGGCAGTGCGTTGATGCAAGGCTTGGCGGAGACTACCCCCCAAAGGCGGTAGCAAAGTTAGCAGCTGTTGCTGCCTTGTGTGTGCAGTATGAGGCAGATTTCCGGCCAAACATGAGCATTGTTGTCAAAGCCCTCCAGCATCTATTAAATGCCCGACCTGGGCCTTCTGGTGATGCATCAAACTCGTAA 1089 45.36 MSCFSCCEEDGIQKAADNGGMYAGKQNTGNNGGYQKPEAAPAVTQAVKMQPILVPTIPVEELSEVTDNFGNDALIGEGSYGRVYYGMLKNGQPAAIKKLDASKQPDDEFLAQVSMVSRLKHGNFVQLLGYCVDGSSRILVYEYASNGSLHDILHGRKGVKGAQPGPVLSWAQRVKIAVGAARGLEYLHEKAESHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDPTLPRGQQSLVTWATPKLSEDKVRQCVDARLGGDYPPKAVAKLAAVAALCVQYEADFRPNMSIVVKALQHLLNARPGPSGDASNS 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 26934297 26936540 + CrPI670011_10g013370.1 Cre10g1337 510639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g1337 362 SMART serkin_6 69 349 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre10g1337 362 PIRSF ILK 25 353 - -
Cre10g1337 362 Gene3D Transferase(Phosphotransferase) domain 1 144 354 - -
Cre10g1337 362 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 3 351 IPR052101 -
Cre10g1337 362 Gene3D Phosphorylase Kinase; domain 1 33 143 - -
Cre10g1337 362 Pfam Protein tyrosine and serine/threonine kinase 74 345 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre10g1337 362 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre10g1337 362 FunFam pto-interacting protein 1 145 356 - -
Cre10g1337 362 ProSiteProfiles Protein kinase domain profile. 69 349 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre10g1337 362 SUPERFAMILY Protein kinase-like (PK-like) 50 345 IPR011009 -
Cre10g1337 362 FunFam PTI1-like tyrosine-protein kinase 3 33 143 - -
Cre10g1337 362 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre10g1337 Cre-Chr10:26934297 Cre10g1883 Cre-Chr10:33411964 5.50E-131 dispersed
Cre10g1337 Cre-Chr10:26934297 Cre09g0443 Cre-Chr9:4265720 1.40E-163 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64466 PF07714 PK_Tyr_Ser-Thr 5.60E-47 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g1337 K13436 - csv:101223136 711.449