Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g1342 ATGCAATTGTGGGTGGGATGTAATGACGATTTTCAGCAAGAGATTGACTTACTGAAGAACTTGAACCACAAAAACATTGTGAAGTATCTTGGATCTTTGAAAACAAAGACTCACCTTCACATAATACTCGAGTATGTGGAGAATGGATCACTTGCCAACATTATCAAGCCAAATAAATTTGGACCTTTTCCAGAATCGTTGGTTGCTGTTTATATCTCTCAGGTTTTGGAAGGCTTGGTTTATCTACATGAGCAGGGTGTAATTCATCGGGACATAAAGGGTGCGAACATACTGACAACCAAAGAGGGCCTTGTGAAACTTGCTGATTTTGGTGTTGCGACAAAATTAACAGAGGCCGATGTTAATACTCATTCAGTTGTTGGAACACCTTACTGGATGGCACCTGAGGTAATTGAAATGTCAGGAGTTTGTGCTGCTTCTGACATATGGAGTGTTGGATGTACTGTGATTGAACTACTCACATGCGTACCTCCGTATTATGATCTACAGCCTATGCCCGCTCTCTTTCGCATTGTACAGGACAAGCATCCTCCAATTCCAGATAGCCTATCACCAGATATCACTGATTTTTTACGCCAGTGCTTTAAGAAGGATGCTAGGCAAAGGCCGGATGCAAAAACTTTGCTTTCTCATCCTTGGATACAGAACTGTCGACGGGCTTTGCATTCTTCTCTTCGTCATAGTGGCACATTAAGAAACACTCAACAAGATGGATCAATTGAAGCAGAAATTTCTAACGGAGACAATCAAAACTCTTGTGAAAGCCCTTCGGCAGAGAAAAATGAAGTCACTGATTCTGATTTTAAAGCTGATTCAAGGAAGGAGTTGTCATCAGATGATGCCACTGATGCGAGCAAGTCCCAAAAGCATTTTGCTTCAGGCCCTAATTTTGTTGAGGAAGGAGAAAGTCTAGAAGAAGATACCCTATTGGATCAGGTTCCTACCTTATCCATTCATGAAAATTCATCTCTTCTAACTGGTTCTGGCAGACTTACTACCTCTGAGCCGACTGAGTTTCATGAATCTCATGGTAGAGGCCATGATGAAGTGATAGTGAATGGTGAAGTGCCATTGGCAGAATTAAGGAAAGATGCTCCTAGAAAACATGGAGAGAAAGAAACTTCTACAACATCTGGAAGTAGATCATTTGGTTTTGAACCTGAAAGTCAGGACAATAGTTTTCAAAAGGTGTCAAAGATGTCAATTGCTTTGGGAGGAGATGAGCTGAGTAAATTTAGTGACACTCCTGGAGATGCTTCCTTGGATGATTTATTCCAACCTCTAGATAAGCACCCCGGGGATCAAGCTGCTGGAGCATCAACATCTCTATCTACTCTACAATCAAACATGGGTAATGTGCCAGTAAATGATGTTGGGAAAAATGACCTGGCCACAAAATTGAGGGCTACGATTGCTCAAAAACAAATGGAAAATGAAATGGGACAGGCAAGTGGTGGGGGTGACCTGCTTCGACTAGTGATGGGTGTTTTAAAGGATGATGATATTGATATTGATGGTTTGGTTTTTGATGAGAAGTTGCCCGGAGAAAACCTTTTCCCTTTGCAGGCTGTTGAATTCGGCAGATTAGTTGGGTCATTGAGACATGATGAACCCGAAGATGTAATTGTATCTGCCTGTCAAAAACTGATTGCTATCTTTCATCAAAGACCGGAGCAGAAAATTGTATATGTTACACAGCATGGTCTACTACCGTTAACTGAGTTGCTTGAAGTTCCTAAAACTCGTATTATATGTTCAGTGCTCCAGCTTATAAATCAGATAGTTAAGGATAATGTTGACTTCCAAGAAAATGCCTGTCTTGTTGGTCTAATTCCTCTGGTAATGGGGTTTGCAGTTCCTGATCGTCCCCGAGAAGTTCGCATGGAAGCAGCTTATTTCTTTCAGCAGCTTTGTCAATCAAGCTCTTTGACATTGCAAATGTTCGTCGCGTGCCGTGGAATACCTGTATTAGTAAGCTTTTTAGAGGCTGACTATGCAAAGTACAGGGACATGGTTCACCTAGCTATTGATGGAATGTGGCAGATCTTTAAGCTCCAGCGTTCCACTCTTAGAAATGGTTTCTGTCGTATAGCAGCAAAAAGTGGAATTCTGCTTAGGCTTATTAACACCCTCTACAGCTTAAATGAGGCAACTCGCTTAGCTTCCATAACAGTTGGGGCGGGATATCCAGTTGATGGTTTAACTCAACGGCCACGATCAGGTCAACTAGATCCTAGCCACCCTATATTCAGTCAGTATGAGGCCTCATTTCCTATGCCTGATCAACCTGATCTTTTGAAGGTCAAACATGGAATAGTTGATCATCACCCGTCTTCTGGACCACCAGAACCTTCTAGGGCTTCAACTTCACATTCTCAAAGATCAGATGCCAATCAATCTGAGAACCGACGCTTTTCCATAGATGCTGATAGGCCTCAATCTAGCAATGCCACAAATGAAGCCTTGGGATCTAAACCGTCAGAGCTTGCATCTTTGGATAAGGTTTTACATTTAGCAAGCAAGGAATCGTCTGGCTTGGCTTCTAAAGAACATGAAAATGTAGATAGATGGAGAACTGAGCGAATGACAAACTCTAATAGGACTTCCACAGATAGGCCTCCAAAATTGGTGGAACCTGCATCTAATGGATTTCCTACAACATTGGCGGCTACTCAACAAGAGCAAGTTCGGCCCCTTCTAAGTCTGTTGGACAAAGAACCCCCGTCTCGACATTTTTCCGGTCAGCTTGAGTACATGCGCCAACTTTCTGGATTGGAGAGACATGAAACTATAATGCCTCTATTGCATGCATCAAATGAAAAGAAGATAAATGGGGAGCATGATTTCTTAATGGCAGAATTCGCTGAGGTTTCTCAACGTGGAAAAGACAATGGAAATGTTGACCCCACTTCTAAGATTTCTCTTAAAACGGCAGCAAAGAAGGTAGGGCCCCTGATTTCCAATGAGGGAGCTGCATCCACATCTGGAATTGCTTCACAGACAGCATCAGGGGTACTTTCAGGTTCGGGCGTATTAAATGCTAGACCAGGGAGTGCAACATCCTCTGGACTTCTTTCGCACATGGTTTCAACTCTGAACGCTGATGTTGCAAGGGAATACCTGGCTAAGGTGGCTGATCTATTGCTCGAGTTTGCTCAAGCAGATACAACTGTGAAGTCATATATGTGCAGCCAAAGCTTGCTTAATCGCCTTTTCCAGATGTTCAATAGGGTAGAGCCCCCAATTCTCTTGAAGATATTGAAGTGTATAAATCATCTATCAACGGATCCAAATTGCTTAGAAAATCTTCAGCGAGCAGATGCAATTAAATATTTGATTCCGAACCTTGAACTCAAAGAAGGGTCGTTGGTGTCGCAAATACATACTGAGGTCCTCAGTGCACTATTCAATTTGTGCAAGATAAATAAGAGGAGACAAGAATATGCAGCTGAAAATGGAATTATTCCACACTTAATGCATTTTATTATTTCAGACTCTCCTCTGAAACAATATGCATTGCCTCTACTGTGTGATATGGCCCATGCATCTCGTAATTCCAGGGAGCAGTTAAGAGCCCACGGTGGATTAGATGTGTATTTGAGTCTACTTGAGGATGACCTTTGGTCTGTCACGGCATTGGATTCTATTGCTGTTTGCTTGGCTCATGATAATGACAACCGAAAAGTTGAACAAGCATTGCTGAAAAAGGATGCAGTTCAGAAATTGGTGAAATTTTTCCAGTGCTGTCCAGAACAACATTTTGTCCATATATTGGAGCCTTTCTTGAAAATCATCACGAAATCTTCCCGTATCAATACGACATTGGCTGTCAACGGATTGACCCCGTTGCTTATAGCAAGGCTGGACCACCAGGATGCGATTGCTCGGCTTAATCTACTTAAACTGATAAAGGCTGTGTATGAGCATCATCCACGACCCAAGCAGTTGATTGTGGAGAATGATTTACCTCATAAACTTCAGAATTTGATTGAGGAACGCAGGGATGGACAACGGTCTGGAGGGCAAGTGTTGGTGAAACAAATGGCCACATCTCTGCTTAAAGCTCTTCATATAAATACTGTTTTGTAA 4110 42.26 MQLWVGCNDDFQQEIDLLKNLNHKNIVKYLGSLKTKTHLHIILEYVENGSLANIIKPNKFGPFPESLVAVYISQVLEGLVYLHEQGVIHRDIKGANILTTKEGLVKLADFGVATKLTEADVNTHSVVGTPYWMAPEVIEMSGVCAASDIWSVGCTVIELLTCVPPYYDLQPMPALFRIVQDKHPPIPDSLSPDITDFLRQCFKKDARQRPDAKTLLSHPWIQNCRRALHSSLRHSGTLRNTQQDGSIEAEISNGDNQNSCESPSAEKNEVTDSDFKADSRKELSSDDATDASKSQKHFASGPNFVEEGESLEEDTLLDQVPTLSIHENSSLLTGSGRLTTSEPTEFHESHGRGHDEVIVNGEVPLAELRKDAPRKHGEKETSTTSGSRSFGFEPESQDNSFQKVSKMSIALGGDELSKFSDTPGDASLDDLFQPLDKHPGDQAAGASTSLSTLQSNMGNVPVNDVGKNDLATKLRATIAQKQMENEMGQASGGGDLLRLVMGVLKDDDIDIDGLVFDEKLPGENLFPLQAVEFGRLVGSLRHDEPEDVIVSACQKLIAIFHQRPEQKIVYVTQHGLLPLTELLEVPKTRIICSVLQLINQIVKDNVDFQENACLVGLIPLVMGFAVPDRPREVRMEAAYFFQQLCQSSSLTLQMFVACRGIPVLVSFLEADYAKYRDMVHLAIDGMWQIFKLQRSTLRNGFCRIAAKSGILLRLINTLYSLNEATRLASITVGAGYPVDGLTQRPRSGQLDPSHPIFSQYEASFPMPDQPDLLKVKHGIVDHHPSSGPPEPSRASTSHSQRSDANQSENRRFSIDADRPQSSNATNEALGSKPSELASLDKVLHLASKESSGLASKEHENVDRWRTERMTNSNRTSTDRPPKLVEPASNGFPTTLAATQQEQVRPLLSLLDKEPPSRHFSGQLEYMRQLSGLERHETIMPLLHASNEKKINGEHDFLMAEFAEVSQRGKDNGNVDPTSKISLKTAAKKVGPLISNEGAASTSGIASQTASGVLSGSGVLNARPGSATSSGLLSHMVSTLNADVAREYLAKVADLLLEFAQADTTVKSYMCSQSLLNRLFQMFNRVEPPILLKILKCINHLSTDPNCLENLQRADAIKYLIPNLELKEGSLVSQIHTEVLSALFNLCKINKRRQEYAAENGIIPHLMHFIISDSPLKQYALPLLCDMAHASRNSREQLRAHGGLDVYLSLLEDDLWSVTALDSIAVCLAHDNDNRKVEQALLKKDAVQKLVKFFQCCPEQHFVHILEPFLKIITKSSRINTTLAVNGLTPLLIARLDHQDAIARLNLLKLIKAVYEHHPRPKQLIVENDLPHKLQNLIEERRDGQRSGGQVLVKQMATSLLKALHINTVL 1369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 27000420 27020818 + CrPI670011_10g013420.1 Cre10g1342 510644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g1342 1369 FunFam MAP3K epsilon protein kinase 1 7 253 - -
Cre10g1342 1369 MobiDBLite consensus disorder prediction 327 401 - -
Cre10g1342 1369 MobiDBLite consensus disorder prediction 367 382 - -
Cre10g1342 1369 MobiDBLite consensus disorder prediction 343 357 - -
Cre10g1342 1369 PRINTS Tyrosine kinase catalytic domain signature 81 99 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre10g1342 1369 PRINTS Tyrosine kinase catalytic domain signature 190 212 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre10g1342 1369 PRINTS Tyrosine kinase catalytic domain signature 43 56 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre10g1342 1369 PRINTS Tyrosine kinase catalytic domain signature 147 169 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre10g1342 1369 MobiDBLite consensus disorder prediction 235 266 - -
Cre10g1342 1369 MobiDBLite consensus disorder prediction 267 293 - -
Cre10g1342 1369 CDD STKc_Cdc7_like 12 221 - -
Cre10g1342 1369 Gene3D - 528 732 IPR011989 -
Cre10g1342 1369 ProSitePatterns Serine/Threonine protein kinases active-site signature. 87 99 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre10g1342 1369 MobiDBLite consensus disorder prediction 383 401 - -
Cre10g1342 1369 MobiDBLite consensus disorder prediction 779 833 - -
Cre10g1342 1369 SMART serkin_6 4 221 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre10g1342 1369 SUPERFAMILY Protein kinase-like (PK-like) 8 222 IPR011009 -
Cre10g1342 1369 PANTHER ARMADILLO REPEAT-CONTAINING PROTEIN 3 258 1369 IPR052441 -
Cre10g1342 1369 MobiDBLite consensus disorder prediction 327 342 - -
Cre10g1342 1369 MobiDBLite consensus disorder prediction 416 449 - -
Cre10g1342 1369 SUPERFAMILY ARM repeat 535 729 IPR016024 -
Cre10g1342 1369 MobiDBLite consensus disorder prediction 235 302 - -
Cre10g1342 1369 MobiDBLite consensus disorder prediction 847 884 - -
Cre10g1342 1369 Pfam Protein kinase domain 10 221 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre10g1342 1369 Gene3D - 1020 1364 IPR011989 -
Cre10g1342 1369 MobiDBLite consensus disorder prediction 789 803 - -
Cre10g1342 1369 FunFam MAP3K epsilon protein kinase 1-like 1018 1364 - -
Cre10g1342 1369 ProSiteProfiles Protein kinase domain profile. 1 221 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre10g1342 1369 MobiDBLite consensus disorder prediction 851 869 - -
Cre10g1342 1369 FunFam MAP3K epsilon protein kinase 1 525 733 - -
Cre10g1342 1369 Gene3D Transferase(Phosphotransferase) domain 1 6 261 - -
Cre10g1342 1369 SMART arm_5 563 603 IPR000225 GO:0005515(InterPro)
Cre10g1342 1369 SMART arm_5 1103 1147 IPR000225 GO:0005515(InterPro)
Cre10g1342 1369 SMART arm_5 1149 1188 IPR000225 GO:0005515(InterPro)
Cre10g1342 1369 SMART arm_5 648 691 IPR000225 GO:0005515(InterPro)
Cre10g1342 1369 SUPERFAMILY ARM repeat 1030 1343 IPR016024 -
Cre10g1342 1369 MobiDBLite consensus disorder prediction 816 832 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre10g1342 Cre-Chr10:27000420 Cre11g2191 Cre-Chr11:33593124 1.20E-40 dispersed
Cre10g1342 Cre-Chr10:27000420 Cre06g1346 Cre-Chr6:7538686 3.20E-54 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64467 PF00069 Pkinase 1.10E-60 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g1342 - - - 0.0