Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g1343 ATGGAGAGAAATTCAAGCAAGAAGGCAAACGAGAGCGAATCGGGTACTGGAATGGATGGTGGAGACAGGATTATGGTGGAAGATGCTTTTAAGAATTTGGAGGTTCCTTCATGGCGGAATCAGATCACATTTAGGGCTCTTTTTACCAGTTTTATTCTTAGCATTGTCTTCAATTTTATCGTCTGTAAACTCAATCTAACCACTGGGGTTATTCCTTCCCTTAATGTCGCTGCTGGGCTTCTGGGATTTGCGATTTTGAAAGGTTACACTTCGATTTTGAATCAGTTTGGTCTCATGAAACAGCCTTTCACTCGACAGGAGAACACTGTGATCCAAACCTGCGTTGTCGCCTCATCTGGGATTGCGTTTAGCAGTGGAACTGCTAGTTATCTTCTGGGAATGAGTGCCAAAATAGCTGCTCAAGCAGAAGAAGGGAATATTCCGATTAATATTAAGAAACTCTCTGTTGGTTGGATGATGGGTTTTCTCTTTGTTGTTAGCTTTGTTGGGTTGTTCTCTATTGTGCCTCTTAGAAAGATGATGATTCTAAAATACAAGTTGACCTATCCAAGTGGAACTGCAACTGCATACCTCATCAACTCCTTTCACACACCCAAAGGAGCTAAGCTGGCAAAGAAACAAGTTGCAGTCCTTTTCAAGAGCTTCTGTTTCAGCTTTGTCTTTGCACTGTTCCAATGGTTCTTTGCCGCTGCTGATGGCTGTGGATTTTCCAGCTTCCCCACATTTGGTCTTCAAGCCTATGCAAAAAGGTTCTATTTTGACTTTTCATCCACGTACGTTGGTGTGGGAATGATCTGTCCTTTCATGGTCAATCTATCTCTTCTTCTTGGAGCCATCATCTCATGGGGTATCATGTGGCCCTTAATTGAGCTAAGGAAGGGAGACTGGTACAGTGCTTCTCTATCTGCAAGCAGTCTTCATGGCATTCAAGGCTATAGGGTTTTTATCGCCATTGCTATGATGCTTGGTGATGGTCTTTACCATGTATTCTTCATGCTCTTCCAAACATTCTACAGCCTATCCAAGCAGAAGTCTGGCAGCGAAAATGCTGATTCATCATTGGAAGTAACTGATTATGATGCTCAACGAAGAACCGAGTACTTCTTGAAAGACCAAATCCCTAACTGGGTAGCGATGCTTGGCTATGTCATACTTGCGGTCATATCTATAATTACAGTTCCCTTAATCTTCCATCAGTTGAAATGGTACCACATTTTGGTTGCTTATGCCATTGCCCCTGTCTTGGCCTTCTGTAATGCCTATGGTTGTGGGCTCACTGATTGGTCTCTTGCATCAAACTATGGTAAATTTGCTATCATCATCTTCAGTGCTTGGGTTGGCCTTGACAATGGAGGTGTTATTGCTGGTCTTGCTTCCTGTGGTGTCATGATGAGCATTGTTTCTACTGCTTCTGATCTTATGCAAGACTTCAAGACCGGTTACTTGACTCTAGCTTCGCCCCGCTCTATGTTTTTCAGCCAAGTTGCAGGCACTGCCATGGGCTGCGTTTTGTCGCCCCTTGTCTTTTGGTTCTTCTTCAAAGCTTATAACGTTGGAGACCCCGAAGGCTCGTACCCTGCACCATATGGTCTAATGTACCGTGGCATTGCTCTTCTCGGCGTCGAGGGTGTCTCTTCCCTCCCTAAAAACTGCCTCACCCTCGCCATTTGCTTCTTCTTCGGTGCTATTGTCATTAACATCATTAGGGATCTGCTCCATAGGTCCGAAACCAAATATCGCATCTACCGTTTCATCCCAAGTCCAATGTGTATGGCGATTCCATTCTACCTCGGTGCTTATTTCGCCATCGACATGTGTGTCGGGAGTTTGATTCTTTTCATCTGGCAGAGGAAGAACAAGGTCAAGGCCGGTGAGTTTGCCCCCGCCGTCGCTTCGGGACTTATCTGTGGCGAATCTTTGTGGAGTGTTCCAGCAGCCATATTGGCCCTGGCCGGTGTCAAAGCTCCTCTTTGCATGAAGTTCTTGAGTTCCTCAACCAATGCTAAGTCTGCGGTTTCGTCTCCATCTCTTCCTCTCGCCGTCGGTTACTCGCCGGGAATTATCCGGTTAGTCGAATCAGCAGTCGCGATCTCGGCAACTAAGCCAACGGACATGGCGGCTGCAGCTACAACGAGCGTTGTGCCGCCGAATCGTCGGCGGACGGTTAACGCGCCGGAAGACAAGTTGGAATTCGAGACGACGGAGGGGGTTGAGCCGATCTTGAGTTTCGATCAGATGGGCATCAAGGACGACCTTCTCCGTGGAATATATGCATACGGTTTTGAAAAACCCTCGGCCATTCAGCAGAGAGCTGTGAGACCGATTATTGAGGGTCGAGATGTTATAGCTCAGGCCCAATCTGGAACTGGCAAGACCTCCATGATTGCCCTTACCGTCTGCCAGATGGTTGATACCTCCAGTAGAGAGGTACAGGCCTTGATCTTGTCCCCTACGAGAGAATTGGCGACTCAGACAGAGAAGGTTATATTGGCAATTGGCGACTACATCAATATACAAGCACACGCATGTATTGGAGGCAAAAGTGTTGGTGAAGATATCAGAAAGCTTGAATTTGGAGTTCAGGTTGTGTCAGGAACTCCTGGAAGAGTCTGTGACATGATCAAGAGAAGGACATTGCGTACCAGAGCCATTAAGTTATTGGTTCTGGATGAGTCTGATGAAATGCTGAGCAGAGGGTTTAAAGACCAAATTTATGATGTATATCGATATCTCCCACCAGAACTTCAGGTTGTCTTGATTTCTGCTACCCTTCCTCATGAAATCCTGGAGATGACGAACAAGTTTATGACAGATCCTGTGAGGATTCTTGTCAAGCGTGATGAGTTAACTTTAGAGGGTATTAAGCAATTCTTTGTTGCGGTTGAAAGGGAAGAGTGGAAATTTGATACCTTATGTGATCTTTATGACACCTTGACTATCACTCAAGCTGTAATTTTCTGTAACACTAAGCGGAAGGTTGAATGGTTGACTGAGAAGATGCGAAGTAATAACTTCACAGTTTCACATATGCATGGGGACATGCCTCAAAAGGAAAGAGATGCAATCATGGGGGAGTTTCGATCAGGAACTACCCGTGTCCTAATTACTACTGATGTTTGGGCACGAGGGCTTGATGTTCAGCAGGTATCACTAGTGATAAATTATGACCTTCCAAACAATCGAGAACTTTACATTCACAGGATAGGAAGGTCGGGTCGGTTTGGGCGCAAGGGTGTTGCTATTAACTTTGTGAAAAGTGATGACATCAAGATCCTGAGAGATATTGAGCAATACTACAGTACTCAGATTGATGAGATGCCCATGAACGTTGCTGATTTAATATAA 3366 45.28 MERNSSKKANESESGTGMDGGDRIMVEDAFKNLEVPSWRNQITFRALFTSFILSIVFNFIVCKLNLTTGVIPSLNVAAGLLGFAILKGYTSILNQFGLMKQPFTRQENTVIQTCVVASSGIAFSSGTASYLLGMSAKIAAQAEEGNIPINIKKLSVGWMMGFLFVVSFVGLFSIVPLRKMMILKYKLTYPSGTATAYLINSFHTPKGAKLAKKQVAVLFKSFCFSFVFALFQWFFAAADGCGFSSFPTFGLQAYAKRFYFDFSSTYVGVGMICPFMVNLSLLLGAIISWGIMWPLIELRKGDWYSASLSASSLHGIQGYRVFIAIAMMLGDGLYHVFFMLFQTFYSLSKQKSGSENADSSLEVTDYDAQRRTEYFLKDQIPNWVAMLGYVILAVISIITVPLIFHQLKWYHILVAYAIAPVLAFCNAYGCGLTDWSLASNYGKFAIIIFSAWVGLDNGGVIAGLASCGVMMSIVSTASDLMQDFKTGYLTLASPRSMFFSQVAGTAMGCVLSPLVFWFFFKAYNVGDPEGSYPAPYGLMYRGIALLGVEGVSSLPKNCLTLAICFFFGAIVINIIRDLLHRSETKYRIYRFIPSPMCMAIPFYLGAYFAIDMCVGSLILFIWQRKNKVKAGEFAPAVASGLICGESLWSVPAAILALAGVKAPLCMKFLSSSTNAKSAVSSPSLPLAVGYSPGIIRLVESAVAISATKPTDMAAAATTSVVPPNRRRTVNAPEDKLEFETTEGVEPILSFDQMGIKDDLLRGIYAYGFEKPSAIQQRAVRPIIEGRDVIAQAQSGTGKTSMIALTVCQMVDTSSREVQALILSPTRELATQTEKVILAIGDYINIQAHACIGGKSVGEDIRKLEFGVQVVSGTPGRVCDMIKRRTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPELQVVLISATLPHEILEMTNKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVEWLTEKMRSNNFTVSHMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI 1121
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 27022950 27033466 - CrPI670011_10g013430.1 Cre10g1343 510645
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cre10g1343 1121 Pfam OPT oligopeptide transporter protein 41 655 IPR004813 GO:0035673(InterPro)
Cre10g1343 1121 CDD DEADc_EIF4AIII_DDX48 750 950 - -
Cre10g1343 1121 Gene3D - 957 1121 IPR027417 -
Cre10g1343 1121 SMART ultradead3 767 964 IPR014001 -
Cre10g1343 1121 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 748 776 IPR014014 GO:0003724(InterPro)
Cre10g1343 1121 Pfam DEAD/DEAH box helicase 773 935 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Cre10g1343 1121 PANTHER OLIGOPEPTIDE TRANSPORTER YGL114W-RELATED 22 672 IPR045035 GO:0016020(PANTHER)|GO:0035673(InterPro)
Cre10g1343 1121 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 816 1104 IPR027417 -
Cre10g1343 1121 Pfam Helicase conserved C-terminal domain 974 1082 IPR001650 -
Cre10g1343 1121 Gene3D - 738 956 IPR027417 -
Cre10g1343 1121 FunFam Eukaryotic initiation factor 4A-III 955 1121 - -
Cre10g1343 1121 NCBIfam OPT family oligopeptide transporter 40 656 IPR004813 GO:0035673(InterPro)
Cre10g1343 1121 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 779 949 IPR014001 -
Cre10g1343 1121 FunFam Eukaryotic initiation factor 4A-III 732 952 - -
Cre10g1343 1121 MobiDBLite consensus disorder prediction 1 22 - -
Cre10g1343 1121 CDD SF2_C_DEAD 961 1091 - -
Cre10g1343 1121 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 960 1121 IPR001650 -
Cre10g1343 1121 SMART helicmild6 1001 1082 IPR001650 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0244 Cre-Chr5:2327081 Cre10g1343 Cre-Chr10:27022950 7.80E-76 dispersed
Cre07g1748 Cre-Chr7:32945787 Cre10g1343 Cre-Chr10:27022950 1.10E-140 dispersed
Cre10g1343 Cre-Chr10:27022950 Cre10g1610 Cre-Chr10:30205719 0.00E+00 dispersed
Cre10g1343 Cre-Chr10:27022950 Cre09g0071 Cre-Chr9:957910 3.60E-141 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g1343 - - - 0.0