Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre10g1343 | ATGGAGAGAAATTCAAGCAAGAAGGCAAACGAGAGCGAATCGGGTACTGGAATGGATGGTGGAGACAGGATTATGGTGGAAGATGCTTTTAAGAATTTGGAGGTTCCTTCATGGCGGAATCAGATCACATTTAGGGCTCTTTTTACCAGTTTTATTCTTAGCATTGTCTTCAATTTTATCGTCTGTAAACTCAATCTAACCACTGGGGTTATTCCTTCCCTTAATGTCGCTGCTGGGCTTCTGGGATTTGCGATTTTGAAAGGTTACACTTCGATTTTGAATCAGTTTGGTCTCATGAAACAGCCTTTCACTCGACAGGAGAACACTGTGATCCAAACCTGCGTTGTCGCCTCATCTGGGATTGCGTTTAGCAGTGGAACTGCTAGTTATCTTCTGGGAATGAGTGCCAAAATAGCTGCTCAAGCAGAAGAAGGGAATATTCCGATTAATATTAAGAAACTCTCTGTTGGTTGGATGATGGGTTTTCTCTTTGTTGTTAGCTTTGTTGGGTTGTTCTCTATTGTGCCTCTTAGAAAGATGATGATTCTAAAATACAAGTTGACCTATCCAAGTGGAACTGCAACTGCATACCTCATCAACTCCTTTCACACACCCAAAGGAGCTAAGCTGGCAAAGAAACAAGTTGCAGTCCTTTTCAAGAGCTTCTGTTTCAGCTTTGTCTTTGCACTGTTCCAATGGTTCTTTGCCGCTGCTGATGGCTGTGGATTTTCCAGCTTCCCCACATTTGGTCTTCAAGCCTATGCAAAAAGGTTCTATTTTGACTTTTCATCCACGTACGTTGGTGTGGGAATGATCTGTCCTTTCATGGTCAATCTATCTCTTCTTCTTGGAGCCATCATCTCATGGGGTATCATGTGGCCCTTAATTGAGCTAAGGAAGGGAGACTGGTACAGTGCTTCTCTATCTGCAAGCAGTCTTCATGGCATTCAAGGCTATAGGGTTTTTATCGCCATTGCTATGATGCTTGGTGATGGTCTTTACCATGTATTCTTCATGCTCTTCCAAACATTCTACAGCCTATCCAAGCAGAAGTCTGGCAGCGAAAATGCTGATTCATCATTGGAAGTAACTGATTATGATGCTCAACGAAGAACCGAGTACTTCTTGAAAGACCAAATCCCTAACTGGGTAGCGATGCTTGGCTATGTCATACTTGCGGTCATATCTATAATTACAGTTCCCTTAATCTTCCATCAGTTGAAATGGTACCACATTTTGGTTGCTTATGCCATTGCCCCTGTCTTGGCCTTCTGTAATGCCTATGGTTGTGGGCTCACTGATTGGTCTCTTGCATCAAACTATGGTAAATTTGCTATCATCATCTTCAGTGCTTGGGTTGGCCTTGACAATGGAGGTGTTATTGCTGGTCTTGCTTCCTGTGGTGTCATGATGAGCATTGTTTCTACTGCTTCTGATCTTATGCAAGACTTCAAGACCGGTTACTTGACTCTAGCTTCGCCCCGCTCTATGTTTTTCAGCCAAGTTGCAGGCACTGCCATGGGCTGCGTTTTGTCGCCCCTTGTCTTTTGGTTCTTCTTCAAAGCTTATAACGTTGGAGACCCCGAAGGCTCGTACCCTGCACCATATGGTCTAATGTACCGTGGCATTGCTCTTCTCGGCGTCGAGGGTGTCTCTTCCCTCCCTAAAAACTGCCTCACCCTCGCCATTTGCTTCTTCTTCGGTGCTATTGTCATTAACATCATTAGGGATCTGCTCCATAGGTCCGAAACCAAATATCGCATCTACCGTTTCATCCCAAGTCCAATGTGTATGGCGATTCCATTCTACCTCGGTGCTTATTTCGCCATCGACATGTGTGTCGGGAGTTTGATTCTTTTCATCTGGCAGAGGAAGAACAAGGTCAAGGCCGGTGAGTTTGCCCCCGCCGTCGCTTCGGGACTTATCTGTGGCGAATCTTTGTGGAGTGTTCCAGCAGCCATATTGGCCCTGGCCGGTGTCAAAGCTCCTCTTTGCATGAAGTTCTTGAGTTCCTCAACCAATGCTAAGTCTGCGGTTTCGTCTCCATCTCTTCCTCTCGCCGTCGGTTACTCGCCGGGAATTATCCGGTTAGTCGAATCAGCAGTCGCGATCTCGGCAACTAAGCCAACGGACATGGCGGCTGCAGCTACAACGAGCGTTGTGCCGCCGAATCGTCGGCGGACGGTTAACGCGCCGGAAGACAAGTTGGAATTCGAGACGACGGAGGGGGTTGAGCCGATCTTGAGTTTCGATCAGATGGGCATCAAGGACGACCTTCTCCGTGGAATATATGCATACGGTTTTGAAAAACCCTCGGCCATTCAGCAGAGAGCTGTGAGACCGATTATTGAGGGTCGAGATGTTATAGCTCAGGCCCAATCTGGAACTGGCAAGACCTCCATGATTGCCCTTACCGTCTGCCAGATGGTTGATACCTCCAGTAGAGAGGTACAGGCCTTGATCTTGTCCCCTACGAGAGAATTGGCGACTCAGACAGAGAAGGTTATATTGGCAATTGGCGACTACATCAATATACAAGCACACGCATGTATTGGAGGCAAAAGTGTTGGTGAAGATATCAGAAAGCTTGAATTTGGAGTTCAGGTTGTGTCAGGAACTCCTGGAAGAGTCTGTGACATGATCAAGAGAAGGACATTGCGTACCAGAGCCATTAAGTTATTGGTTCTGGATGAGTCTGATGAAATGCTGAGCAGAGGGTTTAAAGACCAAATTTATGATGTATATCGATATCTCCCACCAGAACTTCAGGTTGTCTTGATTTCTGCTACCCTTCCTCATGAAATCCTGGAGATGACGAACAAGTTTATGACAGATCCTGTGAGGATTCTTGTCAAGCGTGATGAGTTAACTTTAGAGGGTATTAAGCAATTCTTTGTTGCGGTTGAAAGGGAAGAGTGGAAATTTGATACCTTATGTGATCTTTATGACACCTTGACTATCACTCAAGCTGTAATTTTCTGTAACACTAAGCGGAAGGTTGAATGGTTGACTGAGAAGATGCGAAGTAATAACTTCACAGTTTCACATATGCATGGGGACATGCCTCAAAAGGAAAGAGATGCAATCATGGGGGAGTTTCGATCAGGAACTACCCGTGTCCTAATTACTACTGATGTTTGGGCACGAGGGCTTGATGTTCAGCAGGTATCACTAGTGATAAATTATGACCTTCCAAACAATCGAGAACTTTACATTCACAGGATAGGAAGGTCGGGTCGGTTTGGGCGCAAGGGTGTTGCTATTAACTTTGTGAAAAGTGATGACATCAAGATCCTGAGAGATATTGAGCAATACTACAGTACTCAGATTGATGAGATGCCCATGAACGTTGCTGATTTAATATAA | 3366 | 45.28 | MERNSSKKANESESGTGMDGGDRIMVEDAFKNLEVPSWRNQITFRALFTSFILSIVFNFIVCKLNLTTGVIPSLNVAAGLLGFAILKGYTSILNQFGLMKQPFTRQENTVIQTCVVASSGIAFSSGTASYLLGMSAKIAAQAEEGNIPINIKKLSVGWMMGFLFVVSFVGLFSIVPLRKMMILKYKLTYPSGTATAYLINSFHTPKGAKLAKKQVAVLFKSFCFSFVFALFQWFFAAADGCGFSSFPTFGLQAYAKRFYFDFSSTYVGVGMICPFMVNLSLLLGAIISWGIMWPLIELRKGDWYSASLSASSLHGIQGYRVFIAIAMMLGDGLYHVFFMLFQTFYSLSKQKSGSENADSSLEVTDYDAQRRTEYFLKDQIPNWVAMLGYVILAVISIITVPLIFHQLKWYHILVAYAIAPVLAFCNAYGCGLTDWSLASNYGKFAIIIFSAWVGLDNGGVIAGLASCGVMMSIVSTASDLMQDFKTGYLTLASPRSMFFSQVAGTAMGCVLSPLVFWFFFKAYNVGDPEGSYPAPYGLMYRGIALLGVEGVSSLPKNCLTLAICFFFGAIVINIIRDLLHRSETKYRIYRFIPSPMCMAIPFYLGAYFAIDMCVGSLILFIWQRKNKVKAGEFAPAVASGLICGESLWSVPAAILALAGVKAPLCMKFLSSSTNAKSAVSSPSLPLAVGYSPGIIRLVESAVAISATKPTDMAAAATTSVVPPNRRRTVNAPEDKLEFETTEGVEPILSFDQMGIKDDLLRGIYAYGFEKPSAIQQRAVRPIIEGRDVIAQAQSGTGKTSMIALTVCQMVDTSSREVQALILSPTRELATQTEKVILAIGDYINIQAHACIGGKSVGEDIRKLEFGVQVVSGTPGRVCDMIKRRTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPELQVVLISATLPHEILEMTNKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVEWLTEKMRSNNFTVSHMHGDMPQKERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI | 1121 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 27022950 | 27033466 | - | CrPI670011_10g013430.1 | Cre10g1343 | 510645 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre10g1343 | 1121 | Pfam | OPT oligopeptide transporter protein | 41 | 655 | IPR004813 | GO:0035673(InterPro) | |
Cre10g1343 | 1121 | CDD | DEADc_EIF4AIII_DDX48 | 750 | 950 | - | - | |
Cre10g1343 | 1121 | Gene3D | - | 957 | 1121 | IPR027417 | - | |
Cre10g1343 | 1121 | SMART | ultradead3 | 767 | 964 | IPR014001 | - | |
Cre10g1343 | 1121 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 748 | 776 | IPR014014 | GO:0003724(InterPro) | |
Cre10g1343 | 1121 | Pfam | DEAD/DEAH box helicase | 773 | 935 | IPR011545 | GO:0003676(InterPro)|GO:0005524(InterPro) | |
Cre10g1343 | 1121 | PANTHER | OLIGOPEPTIDE TRANSPORTER YGL114W-RELATED | 22 | 672 | IPR045035 | GO:0016020(PANTHER)|GO:0035673(InterPro) | |
Cre10g1343 | 1121 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 816 | 1104 | IPR027417 | - | |
Cre10g1343 | 1121 | Pfam | Helicase conserved C-terminal domain | 974 | 1082 | IPR001650 | - | |
Cre10g1343 | 1121 | Gene3D | - | 738 | 956 | IPR027417 | - | |
Cre10g1343 | 1121 | FunFam | Eukaryotic initiation factor 4A-III | 955 | 1121 | - | - | |
Cre10g1343 | 1121 | NCBIfam | OPT family oligopeptide transporter | 40 | 656 | IPR004813 | GO:0035673(InterPro) | |
Cre10g1343 | 1121 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 779 | 949 | IPR014001 | - | |
Cre10g1343 | 1121 | FunFam | Eukaryotic initiation factor 4A-III | 732 | 952 | - | - | |
Cre10g1343 | 1121 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Cre10g1343 | 1121 | CDD | SF2_C_DEAD | 961 | 1091 | - | - | |
Cre10g1343 | 1121 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 960 | 1121 | IPR001650 | - | |
Cre10g1343 | 1121 | SMART | helicmild6 | 1001 | 1082 | IPR001650 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre05g0244 | Cre-Chr5:2327081 | Cre10g1343 | Cre-Chr10:27022950 | 7.80E-76 | dispersed | |
Cre07g1748 | Cre-Chr7:32945787 | Cre10g1343 | Cre-Chr10:27022950 | 1.10E-140 | dispersed | |
Cre10g1343 | Cre-Chr10:27022950 | Cre10g1610 | Cre-Chr10:30205719 | 0.00E+00 | dispersed | |
Cre10g1343 | Cre-Chr10:27022950 | Cre09g0071 | Cre-Chr9:957910 | 3.60E-141 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre10g1343 | - | - | - | 0.0 |