Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g1367 ATGGGTCGAGGGAAGATTGAAATCAAAAGGATTGAGAATGCTAATAGCAGGCAAGTTACATTCTCGAAGAGACGAGCTGGGTTGCTTAAGAAGGCTCAAGAACTTGCTATTCTTTGTGATGCTGAAGTTGCTGTTATTATCTTCTCTAATACTGGCAAGCTTTTCGAGTTTTCCAGTGCTGGCATGAAGCATACTCTTGCAAGATACAACAAATGTGTAGAATCTTCAGAGGCTACAGTAGACGTGCACAAGGTCGAGTTTCTTCCTCCCCAGAAGCAAGAGCATGAGGAAGTAGACATTCTAAGAGACGAAATAACAACTCTGCAAATGAAACAATTACAGCTATTGGGAAAGGATCTCACTGGCTTAGGCTTCAAAGAGTTGCAGAACCTGGAGCAACAACTAAATGAAGGGCTATTACTGGTGAAAGAGAAGAAGGAACAGTTACTGACGGAGCAACTAGAGCAATCAAGGGTACAGGAACAACGAGCAATGCTTGAGAATGAAACTCTACGTAGACAGGTCAGTGAGCTTCGGTGTCTGTTTCCGCCGGTTGATTGTCCGCTGCCTGCTTATCTTGAATACTGCTCCCTAGAGCAGAAGAACATTGGCATTAGAAGCCTTGATATGGCCTGCAACTCTGAAATTGAAAGAGGAGATTCAGACACCACCTTGCACTTGGGGCTGCCATCTCATGTTTATTGCAAGAGAAAGGAGGGTGAGAGAGACACTCATTCAAATGATTCAGGGAGCCAAATGGGCCTACTATGA 771 44.23 MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSAGMKHTLARYNKCVESSEATVDVHKVEFLPPQKQEHEEVDILRDEITTLQMKQLQLLGKDLTGLGFKELQNLEQQLNEGLLLVKEKKEQLLTEQLEQSRVQEQRAMLENETLRRQVSELRCLFPPVDCPLPAYLEYCSLEQKNIGIRSLDMACNSEIERGDSDTTLHLGLPSHVYCKRKEGERDTHSNDSGSQMGLL 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 27326804 27330752 + CrPI670011_10g013670.1 Cre10g1367 510669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g1367 256 Pfam K-box region 91 175 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cre10g1367 256 ProSiteProfiles K-box domain profile. 91 181 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cre10g1367 256 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cre10g1367 256 Gene3D - 14 78 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre10g1367 256 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre10g1367 256 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre10g1367 256 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre10g1367 256 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre10g1367 256 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre10g1367 256 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre10g1367 256 Coils Coil 154 174 - -
Cre10g1367 256 FunFam MADS-box transcription factor MADS-MC 13 84 - -
Cre10g1367 256 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre10g1367 256 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 212 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cre10g1367 256 Coils Coil 128 148 - -
Cre10g1367 256 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g0461 Cre-Chr4:17708323 Cre10g1367 Cre-Chr10:27326804 1.70E-35 dispersed
Cre09g2199 Cre-Chr9:41090544 Cre10g1367 Cre-Chr10:27326804 2.70E-24 dispersed
Cre10g1367 Cre-Chr10:27326804 Cre04g1458 Cre-Chr4:33353671 1.00E-22 dispersed
Cre10g1367 Cre-Chr10:27326804 Cre06g0798 Cre-Chr6:1338450 1.40E-27 transposed
Cre10g1367 Cre-Chr10:27326804 Cre05g0279 Cre-Chr5:2591421 1.40E-27 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54533 PF01486 K-box 2.10E-17 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g1367 - - - 0.0