Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre10g1386 | ATGAATCATTTAACTGTTGATTGTGAGGATTCTTTTTATAGTTTACTGGAGCTTGCTTCTGACAATGATGCAGAAGGCTTCAAACGTTTGATGGAGTCTGATTTGTATTCTCTTAACAAGTCTGGTCTCTGGTATGTTCGTCAAAAAGGCTCAAAACAAGTTGTTCATGAGCATAGGACACCCCTGATGGTTGCTGCCACATATGGTTGTGTTGATGTTCTGAAGCTTATACTATCATATCCTGAGGTTGATGTTAATCTCTCATCTGGCACAGACAAGAGCACTGCTCTCCACTGTGCTACTTCTGGTGGATCTGTGAATGTGGTTGATATTGTCGATTTGCTTTTATCTGCTGGTGCTGACCCAAACTCCAAGGATGTCAATGGTGACCGCCCTGTGGATGTCATTTTTGTTCATCCAAAGTTGCAGAAGCAGAATACAAGGTTCAGGCTTGAGGAACTTCTTAATAATCATTCAAATGGATCCATGGATGTGTCCTCTTTACATTTGTCAATCAAAACACCCAATTCAGAGTCACCACCACTTTCTTCATCATTGGAGGATGAATTTCCATCTCCACCCAAGTCTATATCTTCTCCCAAATTTACTGATGGGTTTGGAAACTCTACAAAGGAGAAGAAAGAATATCCAATTGATCCATCACTTCCTGATATCAAGAACAGCATATATGCAACTGATGAGTTTCGGATGTTCTCTTTCAAGGTCAGACCTTGTTCTCGGGCATATTCTCATGATTGGACTGAGTGTCCTTTCGTACACCCAGGGGAGAATGCTCGCAGAAGAGATCCAAGGAAGTTTCACTACAGCTGTGTTCCTTGCCCAGACTTCAGAAAGGGGGCTTGTAGGCGTGGGGATATGTGTGAATATGCACATGGAGTTTTTGAGTGTTGGCTACATCCAGCACAGTACCGAACTCGTCTTTGCAAGGATGGAACCAGTTGCAATAGGCGGGTCTGCTTCTTTGCTCACACCAACGAAGAACTGAGGCCATTGTATGTGTCCACTGGATCTGCTGTCCCTTCCCCACGGTCAATTGGATCTGCACCAACTGTAATGGATATGGCTACTGCATTGGGTCTCCTTCCTGGTTCCCCCTCATCAGTGTCTGCTTTGTCTCCATCTCCATTTACTCAATCCATGTCTCCCTCTTCTAATGGCGTTTCTCACTCTTCTGTGAACTGGCAGCAGCCAAATGTGCCGACTCTTCATTTACCAGGAAGTAACCTTCAATCCAGCCGGTTGAGGTCATCTCTGAATGCCAGGGATATGCCTTTAGAGGATTTAAATGTCTTGCCAGACTTTGACAACCAGCCACGGATTTTGAATGATTTGAACTGTTTCTCTCAGCCTCGCCCGAGTGCTGTGTCTGTTAGCCGATCTGGTTGGACCCAAACTCTAACTCCTAACAACCTTGAAGAGCTTTTTTCTTCTGAGATCTCTTCGTCTCCCAGATTTTCTGATCCAGCTGCCAATGCCTTTTCCCCTACCCGCAAATCAACTATGCTAAACCAATTCCAGCAGCAGCAGCAGAACATGTTGTCACCTATTAATACAAGCATTATGTCCCCTAAGAATGTAGATCATCATTTGTTGCAGGCCTCTTTTGGAGTTTCATCCCCGGGAAGGATGTCGCCGAGAAGCACTGAGCCACTATCCCCAATGGGATCTAGGTTCTCTGCCTTCGTACAGCGTGAAAAGCAACAACACCTCCGGACTCTCAGTTCAAGGGAGCTGGGATCTAATGTCCCAAGCTCATTGATCGGATCTCCTGTCAGTTCTTTGCCTAAATGGGGGTCCCCCAATGGAAAGGTAGATTGGTCGGTTGGTAAGAATGAACTGGGTCAACTGCGAAGGTCATCTTCTTTCGAAATGGGAAATAACGGGGAGGAGCCTGACTTATCATGGGTTCAATCCCTGGTGAAGGAATCCCCACCTGAGATGCTAAAAGAGAAGCTGGCAGTGCCCGGGATGGGTGCTGCGGCATCCGGTGAAGCTGAAGGGTCTGAACAGAGTCAAGTCAGTCATTCTCTGGGCCAAAGGAAACTTGTCCAGGAGGAGGATGATGTGTATTGCTAA | 2097 | 45.97 | MNHLTVDCEDSFYSLLELASDNDAEGFKRLMESDLYSLNKSGLWYVRQKGSKQVVHEHRTPLMVAATYGCVDVLKLILSYPEVDVNLSSGTDKSTALHCATSGGSVNVVDIVDLLLSAGADPNSKDVNGDRPVDVIFVHPKLQKQNTRFRLEELLNNHSNGSMDVSSLHLSIKTPNSESPPLSSSLEDEFPSPPKSISSPKFTDGFGNSTKEKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHTNEELRPLYVSTGSAVPSPRSIGSAPTVMDMATALGLLPGSPSSVSALSPSPFTQSMSPSSNGVSHSSVNWQQPNVPTLHLPGSNLQSSRLRSSLNARDMPLEDLNVLPDFDNQPRILNDLNCFSQPRPSAVSVSRSGWTQTLTPNNLEELFSSEISSSPRFSDPAANAFSPTRKSTMLNQFQQQQQNMLSPINTSIMSPKNVDHHLLQASFGVSSPGRMSPRSTEPLSPMGSRFSAFVQREKQQHLRTLSSRELGSNVPSSLIGSPVSSLPKWGSPNGKVDWSVGKNELGQLRRSSSFEMGNNGEEPDLSWVQSLVKESPPEMLKEKLAVPGMGAAASGEAEGSEQSQVSHSLGQRKLVQEEDDVYC | 698 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 27549866 | 27552447 | + | CrPI670011_10g013860.1 | Cre10g1386 | 510688 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre10g1386 | 698 | Gene3D | - | 274 | 337 | - | - | |
Cre10g1386 | 698 | Gene3D | - | 10 | 159 | IPR036770 | - | |
Cre10g1386 | 698 | PANTHER | UNKEMPT FAMILY MEMBER | 47 | 651 | IPR045234 | - | |
Cre10g1386 | 698 | MobiDBLite | consensus disorder prediction | 378 | 400 | - | - | |
Cre10g1386 | 698 | SUPERFAMILY | Ankyrin repeat | 15 | 136 | IPR036770 | - | |
Cre10g1386 | 698 | PRINTS | Ankyrin repeat signature | 111 | 125 | IPR002110 | GO:0005515(InterPro) | |
Cre10g1386 | 698 | PRINTS | Ankyrin repeat signature | 93 | 108 | IPR002110 | GO:0005515(InterPro) | |
Cre10g1386 | 698 | MobiDBLite | consensus disorder prediction | 171 | 206 | - | - | |
Cre10g1386 | 698 | SMART | ANK_2a | 57 | 87 | IPR002110 | GO:0005515(InterPro) | |
Cre10g1386 | 698 | SMART | ANK_2a | 92 | 124 | IPR002110 | GO:0005515(InterPro) | |
Cre10g1386 | 698 | ProSiteProfiles | Ankyrin repeat profile. | 92 | 127 | IPR002110 | GO:0005515(InterPro) | |
Cre10g1386 | 698 | MobiDBLite | consensus disorder prediction | 171 | 218 | - | - | |
Cre10g1386 | 698 | ProSiteProfiles | Ankyrin repeat region circular profile. | 92 | 126 | - | - | |
Cre10g1386 | 698 | MobiDBLite | consensus disorder prediction | 660 | 698 | - | - | |
Cre10g1386 | 698 | Pfam | Ankyrin repeats (3 copies) | 22 | 126 | IPR002110 | GO:0005515(InterPro) | |
Cre10g1386 | 698 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 278 | 299 | IPR000571 | GO:0046872(InterPro) | |
Cre10g1386 | 698 | ProSiteProfiles | Zinc finger C3H1-type profile. | 279 | 301 | IPR000571 | GO:0046872(InterPro) | |
Cre10g1386 | 698 | MobiDBLite | consensus disorder prediction | 672 | 686 | - | - | |
Cre10g1386 | 698 | FunFam | Zinc finger CCCH domain-containing protein 66 | 232 | 300 | - | - | |
Cre10g1386 | 698 | SMART | c3hfinal6 | 274 | 300 | IPR000571 | GO:0046872(InterPro) | |
Cre10g1386 | 698 | SMART | c3hfinal6 | 309 | 332 | IPR000571 | GO:0046872(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre07g0777 | Cre-Chr7:6353613 | Cre10g1386 | Cre-Chr10:27549866 | 1.70E-120 | dispersed | |
Cre10g1386 | Cre-Chr10:27549866 | Cre10g1828 | Cre-Chr10:32838409 | 3.50E-243 | dispersed | |
Cre10g1386 | Cre-Chr10:27549866 | Cre02g2259 | Cre-Chr2:36180932 | 5.60E-132 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
54534 | PF12796 | Ank_2 | 1.00E-09 | CL0465 | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre10g1386 | - | - | - | 0.0 |