Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g1390 ATGGCGTTGGCCAGTCGCATCCGATCCACCATCCCTGCCCTCAGTAAGTTTTGGAGATCCGAATCCTCATGCACTCCGCTCTCAAGGACTTATGCCGCTACATCAGGGAAAAATGAAGGAAAAGTGAAGGTGCCTATTGCTTTGTTTGGAGGGTCTGGAAACTATGCCTCTGCTCTGTATCTAGCTGCAGTAAAAGCTAATTCTTTAGAAAAGGTGGAGTCTGAGCTTGTTAACCTTGTTGAGGCTATTAAGAAAAGCCCTACATTTTCTCAGTTCACAATGGACCTGTCAGTTCCAGCGGAAACTAGAGTTAAGGCTATCAACGAAATTTCTGCTGAAGCTAAATTTTCAGACACTGTAAAGAACTTTTTGGTTGTGCTGGCTGAGAATGGGAGGCTGAGATATGTAGATAGCATAGCAAAGAGATTTTTGGAGTTGACCATGGCTCATAAGGGAGAAGTTAAAGCAGTTGTTACAACTGTTATTCCCATTCCAGCACAAGAAGAGAAGGAGTTGAAGGAGACATTGCAAGATATAATTGGACAAGGCAAGAAGGTTAAGCTCGAGCAGAAGATTGATCCCAGCATACTTGGTGGTCTAGTTGTAGAATTTGGCGAGAAGGTATTTGACATGTCCATTAAAACCCGAGCACGTCAAATGGAGAGCACTGATCTGCTTTTTCTTATGATGACCCCATTTCTTGGGGTCTCAAATGCAGAAGAGATAGGATCTAAACTTGCAAACTCTGTTCTTGATCAGGAAAAAAAAAAGTACCAGATGTTGGAAGAGCACACCAATATTATAAAAATTTTCCTTGATAAATTTGGGGTGTCGAAGGCCCCACTTCTTTCCGGATGGTTTTATGATCCATCTTCTGGGGGAAGTTTCACCCTCTCCAAGTAA 903 42.64 MALASRIRSTIPALSKFWRSESSCTPLSRTYAATSGKNEGKVKVPIALFGGSGNYASALYLAAVKANSLEKVESELVNLVEAIKKSPTFSQFTMDLSVPAETRVKAINEISAEAKFSDTVKNFLVVLAENGRLRYVDSIAKRFLELTMAHKGEVKAVVTTVIPIPAQEEKELKETLQDIIGQGKKVKLEQKIDPSILGGLVVEFGEKVFDMSIKTRARQMESTDLLFLMMTPFLGVSNAEEIGSKLANSVLDQEKKKYQMLEEHTNIIKIFLDKFGVSKAPLLSGWFYDPSSGGSFTLSK 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 27606565 27611645 - CrPI670011_10g013900.1 Cre10g1390 510692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g1390 300 ProSitePatterns ATP synthase delta (OSCP) subunit signature. 186 205 IPR020781 GO:0015986(InterPro)|GO:0016020(InterPro)|GO:0046933(InterPro)
Cre10g1390 300 NCBIfam ATP synthase F1 subunit delta 54 221 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Cre10g1390 300 PRINTS ATP synthase delta subunit signature 121 132 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Cre10g1390 300 PRINTS ATP synthase delta subunit signature 184 199 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Cre10g1390 300 PRINTS ATP synthase delta subunit signature 199 217 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Cre10g1390 300 PRINTS ATP synthase delta subunit signature 51 70 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Cre10g1390 300 PRINTS ATP synthase delta subunit signature 132 146 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Cre10g1390 300 Pfam ATP synthase delta (OSCP) subunit 53 222 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Cre10g1390 300 Hamap ATP synthase subunit delta [atpD]. 47 226 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Cre10g1390 300 Gene3D - 52 144 IPR026015 -
Cre10g1390 300 PANTHER ATP SYNTHASE DELTA CHAIN 1 222 IPR000711 GO:0000274(PANTHER)|GO:0015986(InterPro)|GO:0015986(PANTHER)|GO:0042776(PANTHER)|GO:0045261(PANTHER)|GO:0046933(PANTHER)|GO:0046933(InterPro)
Cre10g1390 300 SUPERFAMILY N-terminal domain of the delta subunit of the F1F0-ATP synthase 52 153 IPR026015 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g0235 Cre-Chr8:6062838 Cre10g1390 Cre-Chr10:27606565 6.00E-09 transposed
Cre10g1390 Cre-Chr10:27606565 Cre09g0397 Cre-Chr9:3905772 1.20E-83 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g1390 K02137 - rcu:8272168 317.775