Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g1417 ATGGAGTTGGGTTTGAGATTAGGAAATGATCCGCCATTTGTATTCCCTCAAAAACCTCCTTCGTCTTCTTCTTCTTCACACCCAACACCACTTGATTTTTCCCTCTCTTTTTCCTCCATTCTTCAACCTCCTCTTGAACATCAAACCCACAATCACAAACACCATAACCACCTCCTTTCCCGTTCTCTCAACTCTCCTCCGCCGCCCGCCGCCACTTCTCGCCGATCTTCTCAAACTGAAGGATCAGAAGGAGCAGGTGTTTTTACGGAGGTGATAAGTGGAGCGGCTGCGGCGGCGGATGGCGAGGGAGGAGAATTCGGAAGAGGCAACGGAATAGTTTTGTCAACATACAGAAACAGAAATGAAAGGGAAGAAAAAAGAGAGAATGAAGAAGAAGAAGAAGAAGAAGATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGATGAAATTGGGTTGCAGAAAAAAACTGAGGCTTTCGAGACAGCAATCGGCTTTTCTTGAAGAAAGCTTCAAACAACACCATACACTTTACCCTAAGCAAAAGCTAGAAGTTGCAAGAAGACTGAATCTTCTTCCTCGTCAAGTAGAAGTTTGGTTTCAAAATAGACGAGCAAGAACGAAGCTGAAGCAAACAGAAGTAGAGTGTGAATACTTGAAGAAATGTTGCGCAACATTGACCCAACAAAACACAAAGCTTCAAAAGGAACTTCAAGATTTGAGAGCTTTAAAAACCACCCATTCTCTCTTCATGCACTCCCCCGCCACCACTCTCACCTTGTGCGCGTCTTGTGAACGCGCCGCCGCAACCCCCAACTTCCGTTGA 834 44.84 MELGLRLGNDPPFVFPQKPPSSSSSSHPTPLDFSLSFSSILQPPLEHQTHNHKHHNHLLSRSLNSPPPPAATSRRSSQTEGSEGAGVFTEVISGAAAAADGEGGEFGRGNGIVLSTYRNRNEREEKRENEEEEEEEDEEEEEEEEEEEEEEMKLGCRKKLRLSRQQSAFLEESFKQHHTLYPKQKLEVARRLNLLPRQVEVWFQNRRARTKLKQTEVECEYLKKCCATLTQQNTKLQKELQDLRALKTTHSLFMHSPATTLTLCASCERAAATPNFR 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 27881835 27884914 - CrPI670011_10g014170.1 Cre10g1417 510719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g1417 277 SMART halz 213 256 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cre10g1417 277 MobiDBLite consensus disorder prediction 60 84 - -
Cre10g1417 277 MobiDBLite consensus disorder prediction 19 35 - -
Cre10g1417 277 MobiDBLite consensus disorder prediction 120 156 - -
Cre10g1417 277 CDD homeodomain 157 214 IPR001356 GO:0003677(InterPro)
Cre10g1417 277 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 53 272 IPR050762 -
Cre10g1417 277 Coils Coil 226 246 - -
Cre10g1417 277 Pfam Homeobox associated leucine zipper 213 247 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cre10g1417 277 SUPERFAMILY Homeodomain-like 155 222 IPR009057 -
Cre10g1417 277 ProSitePatterns 'Homeobox' domain signature. 188 211 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cre10g1417 277 Pfam Homeodomain 157 211 IPR001356 GO:0003677(InterPro)
Cre10g1417 277 ProSiteProfiles 'Homeobox' domain profile. 153 213 IPR001356 GO:0003677(InterPro)
Cre10g1417 277 MobiDBLite consensus disorder prediction 128 150 - -
Cre10g1417 277 Coils Coil 114 155 - -
Cre10g1417 277 Gene3D - 161 211 - -
Cre10g1417 277 MobiDBLite consensus disorder prediction 1 35 - -
Cre10g1417 277 MobiDBLite consensus disorder prediction 48 84 - -
Cre10g1417 277 SMART HOX_1 155 217 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre10g1417 Cre-Chr10:27881835 Cre10g1878 Cre-Chr10:33370003 3.00E-44 dispersed
Cre10g1417 Cre-Chr10:27881835 Cre09g0360 Cre-Chr9:3557224 1.90E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54537 PF00046 Homeodomain 1.10E-13 CL0123 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g1417 K09338 - csv:101208907 275.789