Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g1429 ATGGGCATTGAAACGGTTCAGAATGACGTCATTTTCCGGTCAAAACTGCCGGACATCTACATCCCAAAGCACCTTCCTCTGCACTCCTACTGCCTACACGAAAACGCCGCCAAAATCGGCGACCGGACTTGTCTAATCAACGGCGTCACCGGCGAATCCTTCACCTACAACGACGTCGATCTGTCCGCACGCAGAGTCGCCGCCGGATTAAACAAGCTCGGCATTACAAAAGGCGATGTAATTATGCTCCTCCTCCCAAATTCGCCGGAATTCGTCTTCGCTTTCCTCGGCGCGTCATACCTCGGCGCAATTATGACGGCGGCGAATCCTTTCTTCACAGCAGCGGAAATCGCAAAGCAAGCAAAAGGATCAAAATCAAAATTAATCGTAACGCAATCGTCGTATTACGAAAAAGTAAAGGAAATAACAGAGGAATTAGCCGACGTTAAAATCATGACGGTCGATTCTCCACCAGAGGGTTGTTTATGGTTCGGCGATCTAATCAAAGCCGAGGAAGGAGATACTCCGAGGGTGGAAATCGACCCAGACGACGTCGTTGCGCTGCCGTATTCCTCTGGAACAACCGGATTACCGAAAGGCGTGATGCTTACACATAAAAGTTTGGTTACGAGTGTGGCTCAGCAAGTGGATGGAGAAAATCCGAATCTGTATTATGGAAATGAGGATGTGATTTTGTGTGTTTTGCCGTTGTTTCATATTTATTCGCTTAATTCGGTTTTGCTCTGTGGATTACGAGCCGGCGCTGCGATTTTGATTATGCCCAAATTTGAGATCGGTTTGCTTTTGCAATTGGTGGAGAAATACAGAGTGTCCATTGCGCCGATTGTGCCGCCCATTGTTTTGGCTATTGCCAAGTCGCCGGACCTTGAGAAGTATGATCTTTCGTCCATCAGAGTGATCAAATGTGGCGGCGCTCCGCTTGGGAAGGAGCTTGAAGATACCGTGAGAGCCAAGTTTCCTAAGGCCGTGCTCGGCCAGGGATACGGAATGACGGAGGCGGGTCCAGTCCTAACAATGGGATTAGCATTTGCAAAGGAGCCATTTCCGATGAAACCCGGCGCCTGTGGCACCGTCGTGAGAAACGCCGAGATGAAGATCGTCGACACCGAAACCGGCAGCTCATTGCCTCGAAACACCCCGGGAGAGATCTGCATCAGAGGCGATCAAATCATGAAAGGGTATCTGAACAATCCGGAGGCGACGGCGGCGACAATCGACAAGGACGGGTGGTTGCACACCGGTGACATCGGATTCATCGACGACGATGACGAGCTGTTCATCGTGGATCGGTTGAAGGAACTGATAAAGTACAAGGGATTTCAAGTGGCTCCGGCGGAACTTGAAGCTCTGTTGCTGACTCATCCGGTGATTTCGGATGCGGCCGTCGTACCAATGAAAGATGAACAAGCTGGAGAGGTTCCCGTTGCGTTCGTCGTGAAATTGAAGAATTCTGAAGTCACTGAGGATGAAATTAAACTATTTGTTTCAAAACAGGTGGTTTTCTACAAAAGAATCAACCGGGTATTTTTCATAGATGCAATTCCCAAATCGCCCTCAGGCAAGATCTTGAGGAAGGAGTTGAGGGCAAAGTTGGCAGCTGCTTTTCCAAATTCTAATTAA 1641 49.06 MGIETVQNDVIFRSKLPDIYIPKHLPLHSYCLHENAAKIGDRTCLINGVTGESFTYNDVDLSARRVAAGLNKLGITKGDVIMLLLPNSPEFVFAFLGASYLGAIMTAANPFFTAAEIAKQAKGSKSKLIVTQSSYYEKVKEITEELADVKIMTVDSPPEGCLWFGDLIKAEEGDTPRVEIDPDDVVALPYSSGTTGLPKGVMLTHKSLVTSVAQQVDGENPNLYYGNEDVILCVLPLFHIYSLNSVLLCGLRAGAAILIMPKFEIGLLLQLVEKYRVSIAPIVPPIVLAIAKSPDLEKYDLSSIRVIKCGGAPLGKELEDTVRAKFPKAVLGQGYGMTEAGPVLTMGLAFAKEPFPMKPGACGTVVRNAEMKIVDTETGSSLPRNTPGEICIRGDQIMKGYLNNPEATAATIDKDGWLHTGDIGFIDDDDELFIVDRLKELIKYKGFQVAPAELEALLLTHPVISDAAVVPMKDEQAGEVPVAFVVKLKNSEVTEDEIKLFVSKQVVFYKRINRVFFIDAIPKSPSGKILRKELRAKLAAAFPNSN 546
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 27987157 27991821 - CrPI670011_10g014290.1 Cre10g1429 510731
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cre10g1429 546 ProSitePatterns Putative AMP-binding domain signature. 188 199 IPR020845 -
Cre10g1429 546 CDD 4CL 21 534 - -
Cre10g1429 546 Pfam AMP-binding enzyme 33 402 IPR000873 -
Cre10g1429 546 FunFam 4-coumarate--CoA ligase 2 440 541 - -
Cre10g1429 546 SUPERFAMILY Acetyl-CoA synthetase-like 20 540 - -
Cre10g1429 546 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 7 535 - GO:0016405(PANTHER)
Cre10g1429 546 Gene3D - 439 541 IPR045851 -
Cre10g1429 546 Gene3D - 5 438 IPR042099 -
Cre10g1429 546 FunFam Long-chain-fatty-acid--CoA ligase FadD 13 439 - -
Cre10g1429 546 Pfam AMP-binding enzyme C-terminal domain 453 528 IPR025110 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g2199 Cre-Chr6:29800320 Cre10g1429 Cre-Chr10:27987157 5.80E-209 dispersed
Cre09g0339 Cre-Chr9:3306460 Cre10g1429 Cre-Chr10:27987157 2.00E-225 dispersed
Cre09g0340 Cre-Chr9:3316852 Cre10g1429 Cre-Chr10:27987157 1.30E-224 dispersed
Cre10g1429 Cre-Chr10:27987157 Cre11g1688 Cre-Chr11:28275371 1.70E-208 dispersed
Cre02g1083 Cre-Chr2:9145225 Cre10g1429 Cre-Chr10:27987157 8.00E-190 transposed
Cre03g0588 Cre-Chr3:4659825 Cre10g1429 Cre-Chr10:27987157 2.80E-115 transposed
Cre04g2121 Cre-Chr4:38454729 Cre10g1429 Cre-Chr10:27987157 1.90E-25 transposed
Cre05g1684 Cre-Chr5:28243029 Cre10g1429 Cre-Chr10:27987157 6.20E-102 transposed
Cre05g2316 Cre-Chr5:34722561 Cre10g1429 Cre-Chr10:27987157 2.60E-95 transposed
Cre07g0581 Cre-Chr7:3575989 Cre10g1429 Cre-Chr10:27987157 9.40E-93 transposed
Cre10g0836 Cre-Chr10:9093723 Cre10g1429 Cre-Chr10:27987157 3.50E-29 transposed
Cre10g2123 Cre-Chr10:35815935 Cre10g1429 Cre-Chr10:27987157 5.80E-103 transposed
Cre11g1786 Cre-Chr11:29452450 Cre10g1429 Cre-Chr10:27987157 9.90E-116 transposed
Cre10g1429 Cre-Chr10:27987157 Cre09g0338 Cre-Chr9:3299700 6.80E-226 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g1429 K01904 - csv:101215427 1003.05