Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cre10g1429 | ATGGGCATTGAAACGGTTCAGAATGACGTCATTTTCCGGTCAAAACTGCCGGACATCTACATCCCAAAGCACCTTCCTCTGCACTCCTACTGCCTACACGAAAACGCCGCCAAAATCGGCGACCGGACTTGTCTAATCAACGGCGTCACCGGCGAATCCTTCACCTACAACGACGTCGATCTGTCCGCACGCAGAGTCGCCGCCGGATTAAACAAGCTCGGCATTACAAAAGGCGATGTAATTATGCTCCTCCTCCCAAATTCGCCGGAATTCGTCTTCGCTTTCCTCGGCGCGTCATACCTCGGCGCAATTATGACGGCGGCGAATCCTTTCTTCACAGCAGCGGAAATCGCAAAGCAAGCAAAAGGATCAAAATCAAAATTAATCGTAACGCAATCGTCGTATTACGAAAAAGTAAAGGAAATAACAGAGGAATTAGCCGACGTTAAAATCATGACGGTCGATTCTCCACCAGAGGGTTGTTTATGGTTCGGCGATCTAATCAAAGCCGAGGAAGGAGATACTCCGAGGGTGGAAATCGACCCAGACGACGTCGTTGCGCTGCCGTATTCCTCTGGAACAACCGGATTACCGAAAGGCGTGATGCTTACACATAAAAGTTTGGTTACGAGTGTGGCTCAGCAAGTGGATGGAGAAAATCCGAATCTGTATTATGGAAATGAGGATGTGATTTTGTGTGTTTTGCCGTTGTTTCATATTTATTCGCTTAATTCGGTTTTGCTCTGTGGATTACGAGCCGGCGCTGCGATTTTGATTATGCCCAAATTTGAGATCGGTTTGCTTTTGCAATTGGTGGAGAAATACAGAGTGTCCATTGCGCCGATTGTGCCGCCCATTGTTTTGGCTATTGCCAAGTCGCCGGACCTTGAGAAGTATGATCTTTCGTCCATCAGAGTGATCAAATGTGGCGGCGCTCCGCTTGGGAAGGAGCTTGAAGATACCGTGAGAGCCAAGTTTCCTAAGGCCGTGCTCGGCCAGGGATACGGAATGACGGAGGCGGGTCCAGTCCTAACAATGGGATTAGCATTTGCAAAGGAGCCATTTCCGATGAAACCCGGCGCCTGTGGCACCGTCGTGAGAAACGCCGAGATGAAGATCGTCGACACCGAAACCGGCAGCTCATTGCCTCGAAACACCCCGGGAGAGATCTGCATCAGAGGCGATCAAATCATGAAAGGGTATCTGAACAATCCGGAGGCGACGGCGGCGACAATCGACAAGGACGGGTGGTTGCACACCGGTGACATCGGATTCATCGACGACGATGACGAGCTGTTCATCGTGGATCGGTTGAAGGAACTGATAAAGTACAAGGGATTTCAAGTGGCTCCGGCGGAACTTGAAGCTCTGTTGCTGACTCATCCGGTGATTTCGGATGCGGCCGTCGTACCAATGAAAGATGAACAAGCTGGAGAGGTTCCCGTTGCGTTCGTCGTGAAATTGAAGAATTCTGAAGTCACTGAGGATGAAATTAAACTATTTGTTTCAAAACAGGTGGTTTTCTACAAAAGAATCAACCGGGTATTTTTCATAGATGCAATTCCCAAATCGCCCTCAGGCAAGATCTTGAGGAAGGAGTTGAGGGCAAAGTTGGCAGCTGCTTTTCCAAATTCTAATTAA | 1641 | 49.06 | MGIETVQNDVIFRSKLPDIYIPKHLPLHSYCLHENAAKIGDRTCLINGVTGESFTYNDVDLSARRVAAGLNKLGITKGDVIMLLLPNSPEFVFAFLGASYLGAIMTAANPFFTAAEIAKQAKGSKSKLIVTQSSYYEKVKEITEELADVKIMTVDSPPEGCLWFGDLIKAEEGDTPRVEIDPDDVVALPYSSGTTGLPKGVMLTHKSLVTSVAQQVDGENPNLYYGNEDVILCVLPLFHIYSLNSVLLCGLRAGAAILIMPKFEIGLLLQLVEKYRVSIAPIVPPIVLAIAKSPDLEKYDLSSIRVIKCGGAPLGKELEDTVRAKFPKAVLGQGYGMTEAGPVLTMGLAFAKEPFPMKPGACGTVVRNAEMKIVDTETGSSLPRNTPGEICIRGDQIMKGYLNNPEATAATIDKDGWLHTGDIGFIDDDDELFIVDRLKELIKYKGFQVAPAELEALLLTHPVISDAAVVPMKDEQAGEVPVAFVVKLKNSEVTEDEIKLFVSKQVVFYKRINRVFFIDAIPKSPSGKILRKELRAKLAAAFPNSN | 546 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 27987157 | 27991821 | - | CrPI670011_10g014290.1 | Cre10g1429 | 510731 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cre10g1429 | 546 | ProSitePatterns | Putative AMP-binding domain signature. | 188 | 199 | IPR020845 | - | |
| Cre10g1429 | 546 | CDD | 4CL | 21 | 534 | - | - | |
| Cre10g1429 | 546 | Pfam | AMP-binding enzyme | 33 | 402 | IPR000873 | - | |
| Cre10g1429 | 546 | FunFam | 4-coumarate--CoA ligase 2 | 440 | 541 | - | - | |
| Cre10g1429 | 546 | SUPERFAMILY | Acetyl-CoA synthetase-like | 20 | 540 | - | - | |
| Cre10g1429 | 546 | PANTHER | LONG-CHAIN-FATTY-ACID--COA LIGASE | 7 | 535 | - | GO:0016405(PANTHER) | |
| Cre10g1429 | 546 | Gene3D | - | 439 | 541 | IPR045851 | - | |
| Cre10g1429 | 546 | Gene3D | - | 5 | 438 | IPR042099 | - | |
| Cre10g1429 | 546 | FunFam | Long-chain-fatty-acid--CoA ligase FadD | 13 | 439 | - | - | |
| Cre10g1429 | 546 | Pfam | AMP-binding enzyme C-terminal domain | 453 | 528 | IPR025110 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cre06g2199 | Cre-Chr6:29800320 | Cre10g1429 | Cre-Chr10:27987157 | 5.80E-209 | dispersed | |
| Cre09g0339 | Cre-Chr9:3306460 | Cre10g1429 | Cre-Chr10:27987157 | 2.00E-225 | dispersed | |
| Cre09g0340 | Cre-Chr9:3316852 | Cre10g1429 | Cre-Chr10:27987157 | 1.30E-224 | dispersed | |
| Cre10g1429 | Cre-Chr10:27987157 | Cre11g1688 | Cre-Chr11:28275371 | 1.70E-208 | dispersed | |
| Cre02g1083 | Cre-Chr2:9145225 | Cre10g1429 | Cre-Chr10:27987157 | 8.00E-190 | transposed | |
| Cre03g0588 | Cre-Chr3:4659825 | Cre10g1429 | Cre-Chr10:27987157 | 2.80E-115 | transposed | |
| Cre04g2121 | Cre-Chr4:38454729 | Cre10g1429 | Cre-Chr10:27987157 | 1.90E-25 | transposed | |
| Cre05g1684 | Cre-Chr5:28243029 | Cre10g1429 | Cre-Chr10:27987157 | 6.20E-102 | transposed | |
| Cre05g2316 | Cre-Chr5:34722561 | Cre10g1429 | Cre-Chr10:27987157 | 2.60E-95 | transposed | |
| Cre07g0581 | Cre-Chr7:3575989 | Cre10g1429 | Cre-Chr10:27987157 | 9.40E-93 | transposed | |
| Cre10g0836 | Cre-Chr10:9093723 | Cre10g1429 | Cre-Chr10:27987157 | 3.50E-29 | transposed | |
| Cre10g2123 | Cre-Chr10:35815935 | Cre10g1429 | Cre-Chr10:27987157 | 5.80E-103 | transposed | |
| Cre11g1786 | Cre-Chr11:29452450 | Cre10g1429 | Cre-Chr10:27987157 | 9.90E-116 | transposed | |
| Cre10g1429 | Cre-Chr10:27987157 | Cre09g0338 | Cre-Chr9:3299700 | 6.80E-226 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cre10g1429 | K01904 | - | csv:101215427 | 1003.05 |