Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g1438 ATGATATGGTCACCATCACTCAAGGTTGAGATTCCTGAACCTGCTTGCCTTCTTTTCTTGATTCTTCTTCCTCAATCCATCATCGCTTCCAATTTCAATCTCATGAAATCGGATAAGAAGTTGTATATTTTCATCGCCTGTACGCTCTCTGAGGTACCGCCGCCTTACTTCTCCTTTGGAGATATCTCTGTAAATGGCGGATCTCAAAGAGCGGTTGCTTCCACCGAAACCTGCTTCTGCTGGCTGAAGAAGCGAGGGCAGGGACTTAGATCTTGGATCCGGGTAGATTCCTCTGGGAACTCCCAGATTATTGAGGTTGATAAGTTCACCATGATGCGTCGTTGTGATCTACCTGCACGTGATTTGCGGTTGCTTGATCCTTTGTTTGTTTACCCTTCAACAATTCTTGGTAGAGAGAAGGCTATTGTAGTCAATCTAGAGCAGATTCGATGTATTATAACAGCTGATGAAGTTTTGCTGTTAAATTCCCTTGATAGTTATGTACTGCAGTATGTGGTGGAGCTACAAAGGCGATTGAAGACTACTGGGGTTGATGAGGTTTGGCAGAATGATGCAAATCATGGTGCTGACTTAAACCGAAGAAGGGGAAGTAGGAATTTTGATAATGTATTTGGAAACACCTCTCCTGATTATTTGCCCTTTGAGTTTAGAGCTTTAGAAGTTGCTTTGGAAGCAGCATGTACATTTCTTGATTCCCAGGCTGCAGAATTAGAAATCGAAGCATACCCATTGCTAGATGAACTTACGTCAAAAATCAGTACATTAAATTTGGAGCGGGTCCGTCGCTTGAAAAGCAGACTTGTTGCCCTGACTCGTAGGGTTCAGAAGGTTAGGGATGAAATAGAGCAGCTCATGGATGATGATGGAGATATGGCAGAAATGTACCTCACCGAGAAGAAAATGAGAATGGAGTCCTTTGTTTATGGTGATCAGTCTGTGAGTGGATACAGATCAATTGATGGAGCGTCTATTTCTGCTCCTGTTTCTCCTGTATCATCTCCACCCGAAACTCGCAGGCTTGAGAAGAGCCTGAGCATTGCCAGGAGCCGGCATGAGAGCATGAGAAGTTCAGAAAGTACCACTGAAAATATAGAGGAGCTCGAGATGCTTCTTGAAGCATATTTTGTTGTCATTGATAGCACCCTGAATAAGTTGACATCGTTGAAAGAATACATTGATGACACAGAAGATTTCATCAACATCCAGTTGGATAATGTACGTAATCAGTTGATTCAGTTTGAGCTACTGCTGACTACCGCAACATTTGTTGTTGCCATTTTTGGGGTGGTAGCTGGAATTTTTGGCATGAATTTTGAAATACCAATGTTTGGGGATCCTGATGCATTCAAGTGGGTTCTTCTAATTACAGGAGTAAGTGGAATTGTCATATTTTCTGCATTTGTTTGGTTTTTCAGATACAAAAGGCTGATGCCACTTTAA 1461 42.3 MIWSPSLKVEIPEPACLLFLILLPQSIIASNFNLMKSDKKLYIFIACTLSEVPPPYFSFGDISVNGGSQRAVASTETCFCWLKKRGQGLRSWIRVDSSGNSQIIEVDKFTMMRRCDLPARDLRLLDPLFVYPSTILGREKAIVVNLEQIRCIITADEVLLLNSLDSYVLQYVVELQRRLKTTGVDEVWQNDANHGADLNRRRGSRNFDNVFGNTSPDYLPFEFRALEVALEAACTFLDSQAAELEIEAYPLLDELTSKISTLNLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEMYLTEKKMRMESFVYGDQSVSGYRSIDGASISAPVSPVSSPPETRRLEKSLSIARSRHESMRSSESTTENIEELEMLLEAYFVVIDSTLNKLTSLKEYIDDTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGMNFEIPMFGDPDAFKWVLLITGVSGIVIFSAFVWFFRYKRLMPL 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 28110223 28114096 + CrPI670011_10g014380.1 Cre10g1438 510740

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g1438 486 FunFam Magnesium transporter MRS2-1 424 484 - -
Cre10g1438 486 CDD Mrs2_Mfm1p-like 92 483 IPR039204 -
Cre10g1438 486 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 423 476 IPR045863 -
Cre10g1438 486 FunFam Magnesium transporter MRS2-1 81 163 - -
Cre10g1438 486 Gene3D - 81 163 - -
Cre10g1438 486 Gene3D Magnesium transport protein CorA, transmembrane region 424 484 - -
Cre10g1438 486 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 82 483 IPR039204 GO:0015095(PANTHER)|GO:0015693(PANTHER)
Cre10g1438 486 Coils Coil 267 294 - -
Cre10g1438 486 Gene3D Magnesium transport protein CorA, transmembrane region 164 417 - -
Cre10g1438 486 Pfam Magnesium transporter MRS2-like 365 414 - -
Cre10g1438 486 Pfam Magnesium transporter MRS2-like 96 309 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g1438 K16075 - - csv:101217419 744.191
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1047 Cre-Chr2:8353547 Cre10g1438 Cre-Chr10:28110223 9.20E-89 dispersed
Cre07g0431 Cre-Chr7:1999281 Cre10g1438 Cre-Chr10:28110223 3.50E-86 dispersed
Cre08g0982 Cre-Chr8:22943810 Cre10g1438 Cre-Chr10:28110223 1.00E-98 dispersed
Cre10g1438 Cre-Chr10:28110223 Cre06g1415 Cre-Chr6:8444609 8.50E-87 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre10g1438 . 82 486 MRS2 Gene Family AT1G16010 86.4 8.3e-190 660.2
Cre08g0982 . 150 506 MRS2 Gene Family AT1G16010 52.0 1.0e-99 360.9
Cre06g1415 . 1 359 MRS2 Gene Family AT5G64560 79.9 1.8e-156 549.3
Cre07g0431 . 708 1080 MRS2 Gene Family AT5G64560 68.5 4.4e-131 464.9
Cre02g1047 . 14 495 MRS2 Gene Family AT3G19640 64.4 1.1e-155 547.0
Cre05g1128 . 59 433 MRS2 Gene Family AT3G58970 69.6 6.8e-136 481.1
Cre02g0369 . 59 416 MRS2 Gene Family AT3G58970 71.5 9.2e-133 470.7
Cre08g0982 . 144 506 MRS2 Gene Family AT2G03620 67.5 1.7e-128 456.4
Cre10g1438 . 79 486 MRS2 Gene Family AT2G03620 54.9 2.5e-111 399.4
Cre06g1415 . 1 321 MRS2 Gene Family AT5G09690 77.2 1.1e-127 453.4
Cre07g0431 . 708 1042 MRS2 Gene Family AT5G09690 63.4 5.8e-108 387.9
Cre10g1438 . 83 422 MRS2 Gene Family AT5G09690 50.6 8.1e-78 287.7
Cre06g1415 . 23 281 MRS2 Gene Family AT5G09720 69.1 8.0e-88 320.9
Cre07g0431 . 744 1002 MRS2 Gene Family AT5G09720 61.3 1.2e-75 280.4
Cre10g1438 . 82 486 MRS2 Gene Family AT1G80900 84.7 3.1e-184 641.7
Cre08g0982 . 151 506 MRS2 Gene Family AT1G80900 54.3 8.8e-99 357.8
Cre01g1187 . 16 436 MRS2 Gene Family AT5G22830 68.6 5.7e-149 524.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004467 2 3 1 2 1 1 2 1 1 1 1 1 1 2 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 2 42