Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cre10g1438 | ATGATATGGTCACCATCACTCAAGGTTGAGATTCCTGAACCTGCTTGCCTTCTTTTCTTGATTCTTCTTCCTCAATCCATCATCGCTTCCAATTTCAATCTCATGAAATCGGATAAGAAGTTGTATATTTTCATCGCCTGTACGCTCTCTGAGGTACCGCCGCCTTACTTCTCCTTTGGAGATATCTCTGTAAATGGCGGATCTCAAAGAGCGGTTGCTTCCACCGAAACCTGCTTCTGCTGGCTGAAGAAGCGAGGGCAGGGACTTAGATCTTGGATCCGGGTAGATTCCTCTGGGAACTCCCAGATTATTGAGGTTGATAAGTTCACCATGATGCGTCGTTGTGATCTACCTGCACGTGATTTGCGGTTGCTTGATCCTTTGTTTGTTTACCCTTCAACAATTCTTGGTAGAGAGAAGGCTATTGTAGTCAATCTAGAGCAGATTCGATGTATTATAACAGCTGATGAAGTTTTGCTGTTAAATTCCCTTGATAGTTATGTACTGCAGTATGTGGTGGAGCTACAAAGGCGATTGAAGACTACTGGGGTTGATGAGGTTTGGCAGAATGATGCAAATCATGGTGCTGACTTAAACCGAAGAAGGGGAAGTAGGAATTTTGATAATGTATTTGGAAACACCTCTCCTGATTATTTGCCCTTTGAGTTTAGAGCTTTAGAAGTTGCTTTGGAAGCAGCATGTACATTTCTTGATTCCCAGGCTGCAGAATTAGAAATCGAAGCATACCCATTGCTAGATGAACTTACGTCAAAAATCAGTACATTAAATTTGGAGCGGGTCCGTCGCTTGAAAAGCAGACTTGTTGCCCTGACTCGTAGGGTTCAGAAGGTTAGGGATGAAATAGAGCAGCTCATGGATGATGATGGAGATATGGCAGAAATGTACCTCACCGAGAAGAAAATGAGAATGGAGTCCTTTGTTTATGGTGATCAGTCTGTGAGTGGATACAGATCAATTGATGGAGCGTCTATTTCTGCTCCTGTTTCTCCTGTATCATCTCCACCCGAAACTCGCAGGCTTGAGAAGAGCCTGAGCATTGCCAGGAGCCGGCATGAGAGCATGAGAAGTTCAGAAAGTACCACTGAAAATATAGAGGAGCTCGAGATGCTTCTTGAAGCATATTTTGTTGTCATTGATAGCACCCTGAATAAGTTGACATCGTTGAAAGAATACATTGATGACACAGAAGATTTCATCAACATCCAGTTGGATAATGTACGTAATCAGTTGATTCAGTTTGAGCTACTGCTGACTACCGCAACATTTGTTGTTGCCATTTTTGGGGTGGTAGCTGGAATTTTTGGCATGAATTTTGAAATACCAATGTTTGGGGATCCTGATGCATTCAAGTGGGTTCTTCTAATTACAGGAGTAAGTGGAATTGTCATATTTTCTGCATTTGTTTGGTTTTTCAGATACAAAAGGCTGATGCCACTTTAA | 1461 | 42.3 | MIWSPSLKVEIPEPACLLFLILLPQSIIASNFNLMKSDKKLYIFIACTLSEVPPPYFSFGDISVNGGSQRAVASTETCFCWLKKRGQGLRSWIRVDSSGNSQIIEVDKFTMMRRCDLPARDLRLLDPLFVYPSTILGREKAIVVNLEQIRCIITADEVLLLNSLDSYVLQYVVELQRRLKTTGVDEVWQNDANHGADLNRRRGSRNFDNVFGNTSPDYLPFEFRALEVALEAACTFLDSQAAELEIEAYPLLDELTSKISTLNLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEMYLTEKKMRMESFVYGDQSVSGYRSIDGASISAPVSPVSSPPETRRLEKSLSIARSRHESMRSSESTTENIEELEMLLEAYFVVIDSTLNKLTSLKEYIDDTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGMNFEIPMFGDPDAFKWVLLITGVSGIVIFSAFVWFFRYKRLMPL | 486 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 28110223 | 28114096 | + | CrPI670011_10g014380.1 | Cre10g1438 | 510740 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cre10g1438 | 486 | FunFam | Magnesium transporter MRS2-1 | 424 | 484 | - | - | |
| Cre10g1438 | 486 | CDD | Mrs2_Mfm1p-like | 92 | 483 | IPR039204 | - | |
| Cre10g1438 | 486 | SUPERFAMILY | Magnesium transport protein CorA, transmembrane region | 423 | 476 | IPR045863 | - | |
| Cre10g1438 | 486 | FunFam | Magnesium transporter MRS2-1 | 81 | 163 | - | - | |
| Cre10g1438 | 486 | Gene3D | - | 81 | 163 | - | - | |
| Cre10g1438 | 486 | Gene3D | Magnesium transport protein CorA, transmembrane region | 424 | 484 | - | - | |
| Cre10g1438 | 486 | PANTHER | RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL | 82 | 483 | IPR039204 | GO:0015095(PANTHER)|GO:0015693(PANTHER) | |
| Cre10g1438 | 486 | Coils | Coil | 267 | 294 | - | - | |
| Cre10g1438 | 486 | Gene3D | Magnesium transport protein CorA, transmembrane region | 164 | 417 | - | - | |
| Cre10g1438 | 486 | Pfam | Magnesium transporter MRS2-like | 365 | 414 | - | - | |
| Cre10g1438 | 486 | Pfam | Magnesium transporter MRS2-like | 96 | 309 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cre02g1047 | Cre-Chr2:8353547 | Cre10g1438 | Cre-Chr10:28110223 | 9.20E-89 | dispersed | |
| Cre07g0431 | Cre-Chr7:1999281 | Cre10g1438 | Cre-Chr10:28110223 | 3.50E-86 | dispersed | |
| Cre08g0982 | Cre-Chr8:22943810 | Cre10g1438 | Cre-Chr10:28110223 | 1.00E-98 | dispersed | |
| Cre10g1438 | Cre-Chr10:28110223 | Cre06g1415 | Cre-Chr6:8444609 | 8.50E-87 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cre10g1438 | K16075 | - | csv:101217419 | 744.191 |