Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g1444 ATGGCGGGTGAGGCGGCACGACCGAGGAATGTTTTATTTGGGAAATACGAAATGGGTCGGCTATTGGGGAAAGGGACCTTTGCGAAGGTCTATTATGGAAGAAACTTGATGACCCACGAGAGTGTTGCCATTAAAGTTATCCTCAAGGACAGGGTGAAGAAAGAGGGGCTTCTTGAGCAAATCCGGCGAGAAATTTCTGTTATGGGGTTGGTTCGTCATCCCCATATTGTGGAATTGAAAGAAGTAATGGCGACGAAATCGAAGGTGTATTTTGTGATGGAGTATGTTAATGGGGGCGAACTGTTTGTGAAGTTGTCTCAGCAAGGAAAATTGACTGAAGATGGAGCAAGAAAGTACTTTCAACAACTTATCTCAGCCGTGGACTTTTGCCACAGCCGTGGTGTCTCTCACCGTGATTTGAAGCCTGAAAATCTCCTTCTTGACGAGAATGGGAATTTGAAAGTCTCTGATTTTGGTCTCTCCGCCCTGCCGGAGCAGCTCCGGATCGACGGTTTGCTTCACACACGGTGTGGAACTCCGGCGTATGTGGCGCCTGAGGTACTCAGAAAGAAGGGCTATGACGGTGCTAAGGCGGATATTTGGTCTTGTGGAGTGATTTTGTTTGTGTTGCTTGCTGGGACTCTACCATTTCGAGCTGATAATGCGATGAAGTTGTATAGGAAGATTTTCAAGGCGGAGTTTGAATTTCCTCCATGGTTTTCTTCAGAAGCCAAGGAAATGGTATCTAAGCTTCTGGTTGTTGATCCTCAAAAGAGAGCTTCAATGGTTCAGATAATGCAGAGTCCTTGGTTTCAAAAGGGCTTCACAAAGCCAGTTTCATTCATTGAGAAAGATGAATTCAACGATGAATTCTCTGAATTGGCAAATCCCAAGTTGTTGTCCTCTTCTCCTCCTTTTTACAATGCCTTTGAGTTCATTTCCTCAATGTCCTCTGGTTTTGACTTGTCTAGTTTGTTTGAAAGCAAGAAGAAACAAGGCTCCATTTTCACTTCGAAATGCTCTGCTTCAGCCATTATAGCCAAGCTTCAGTCTCTGGCCGTGAAGCTCAACTTCAAGGCTACTAATCTGAAGGAGTTCAAGGTGAGACTGCAGGCCAAGGAGGAAGGGAGGAAAGGGAAGTTGACGGTGACCGCAGAGGTTTACGAGGCGGCTCCGGAGCTGGCAGTGGTTGAGTTCTCAAAGTCGGCCGGCGACACTTTGGAGTACAATAAGTTCTGTGAGAAGGATGTGAGGCCTGCATTGAAAGACATAGTTTGGAGCTGGCAAGGAGAGAGTGAGTGCCTATAA 1308 46.25 MAGEAARPRNVLFGKYEMGRLLGKGTFAKVYYGRNLMTHESVAIKVILKDRVKKEGLLEQIRREISVMGLVRHPHIVELKEVMATKSKVYFVMEYVNGGELFVKLSQQGKLTEDGARKYFQQLISAVDFCHSRGVSHRDLKPENLLLDENGNLKVSDFGLSALPEQLRIDGLLHTRCGTPAYVAPEVLRKKGYDGAKADIWSCGVILFVLLAGTLPFRADNAMKLYRKIFKAEFEFPPWFSSEAKEMVSKLLVVDPQKRASMVQIMQSPWFQKGFTKPVSFIEKDEFNDEFSELANPKLLSSSPPFYNAFEFISSMSSGFDLSSLFESKKKQGSIFTSKCSASAIIAKLQSLAVKLNFKATNLKEFKVRLQAKEEGRKGKLTVTAEVYEAAPELAVVEFSKSAGDTLEYNKFCEKDVRPALKDIVWSWQGESECL 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 28245196 28246503 + CrPI670011_10g014440.1 Cre10g1444 510746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g1444 435 ProSiteProfiles NAF domain profile. 302 327 IPR018451 GO:0007165(InterPro)
Cre10g1444 435 ProSitePatterns Protein kinases ATP-binding region signature. 22 54 IPR017441 GO:0005524(InterPro)
Cre10g1444 435 Gene3D Kinase associated domain 1, KA1 305 427 - -
Cre10g1444 435 Gene3D Transferase(Phosphotransferase) domain 1 8 304 - -
Cre10g1444 435 SUPERFAMILY Protein kinase-like (PK-like) 12 284 IPR011009 -
Cre10g1444 435 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre10g1444 435 SMART serkin_6 16 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre10g1444 435 Pfam NAF domain 304 359 IPR004041 GO:0007165(InterPro)
Cre10g1444 435 CDD CIPK_C 308 422 - -
Cre10g1444 435 CDD STKc_SnRK3 15 270 - -
Cre10g1444 435 FunFam Non-specific serine/threonine protein kinase 302 426 - -
Cre10g1444 435 Pfam Protein kinase domain 16 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre10g1444 435 FunFam Non-specific serine/threonine protein kinase 9 299 - -
Cre10g1444 435 ProSiteProfiles Protein kinase domain profile. 16 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre10g1444 435 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 9 419 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cre10g1444 435 FunFam Non-specific serine/threonine protein kinase 7 95 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0292 Cre-Chr5:2702344 Cre10g1444 Cre-Chr10:28245196 1.50E-51 dispersed
Cre06g2099 Cre-Chr6:28784355 Cre10g1444 Cre-Chr10:28245196 3.70E-134 dispersed
Cre06g2283 Cre-Chr6:30767739 Cre10g1444 Cre-Chr10:28245196 2.90E-24 dispersed
Cre08g1128 Cre-Chr8:24453921 Cre10g1444 Cre-Chr10:28245196 4.80E-98 dispersed
Cre10g0466 Cre-Chr10:3694379 Cre10g1444 Cre-Chr10:28245196 4.00E-51 dispersed
Cre10g1444 Cre-Chr10:28245196 Cre11g0554 Cre-Chr11:2560297 6.10E-68 dispersed
Cre11g2191 Cre-Chr11:33593124 Cre10g1444 Cre-Chr10:28245196 2.70E-29 dispersed
Cre10g1444 Cre-Chr10:28245196 Cre05g1802 Cre-Chr5:30026753 8.80E-176 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64471 PF00069 Pkinase 3.20E-77 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g1444 - - - 0.0