Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g1470 ATGATGGCTTTTAGCTTCGTTTCTGCATGGAACAAGAGGCGTAGACAAAAAAAGTCTTCTCAATTAGATCATCAAATTGCTAACCCTTGGATCTATAGACCAGTTGAGTTGTGGCAACTTGAGGATCAAACCCTTCAAAGACCTTCCAAAAGACACCATGGATCCGCTGTCTTCACACTTCGGGAAATGGAAGACGCTACGTGTTCTTTTAGTGATGCTAACTTGCTCGGAAAAGGTGGTTTCGGTCGAGTTTACCGTGGCACTTTACGATCTGGAGAGGTTGTAGCAATAAAGAAAATGGAGATGCCAGCATTTAAGGAAGCAGAAGGAGAGCGTGAGTTTCGAGTGGAAGTTGACATTCTCAGCAGATTGGACCATCCAAATCTTGTTTCCTTGATTGGTTATTGTGCTGATGGGAAGCATCGGTTTCTAGTTTATGAATATATGCATAAAGGAAACTTGCAAGATCATTTAAATGGAATTGGAGAAGCAAAGATGGATTGGGAAAGGAGGCTAAAAGTGGCACTTGGAGCAGCAAAGGGACTTGCATATCTTCATTCAAGTTCAGCTGCTGGGATGCCAATTGTCCATAGAGATTTCAAATCCACAAACATTCTTCTTGACTCCAACTTGGATGCAAAGATCTCGGACTTTGGGCTTGCAAAGTTTATGCCGGAAGGACAAGAATCACATGTGACTGCAAGAGTCCTCGGCACATTTGGATACTTTGACCCTGAGTATACCTCCACAGGAAAACTAAGCTTGCAAAGTGATGTATATGCATTTGGAGTGGTTCTTCTTGAGCTGCTGACGGGCCGCCGAGCAGTGGACTTGAACCAAGGCCCAAATGACCAAAACCTTGTCGTGCAGGTACGACATATATTGAATGATCGAAAAAAGTTGCGTAAGGTTATAGATCCAGAAATGAGTCGAAGTTCATATACAATGGAATCCATTGCCATCTTTGCAAACTTGGCTTCACGTTGCGTCCGAACAGAAAGTAGTGAAAGGCCAACAATGGCAGAATGTGTAAGGGAGCTCCAAATGATTATCTACACAAAGTTACAAACTCGCAAGGCCTAA 1083 43.12 MMAFSFVSAWNKRRRQKKSSQLDHQIANPWIYRPVELWQLEDQTLQRPSKRHHGSAVFTLREMEDATCSFSDANLLGKGGFGRVYRGTLRSGEVVAIKKMEMPAFKEAEGEREFRVEVDILSRLDHPNLVSLIGYCADGKHRFLVYEYMHKGNLQDHLNGIGEAKMDWERRLKVALGAAKGLAYLHSSSAAGMPIVHRDFKSTNILLDSNLDAKISDFGLAKFMPEGQESHVTARVLGTFGYFDPEYTSTGKLSLQSDVYAFGVVLLELLTGRRAVDLNQGPNDQNLVVQVRHILNDRKKLRKVIDPEMSRSSYTMESIAIFANLASRCVRTESSERPTMAECVRELQMIIYTKLQTRKA 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 28563898 28568908 + CrPI670011_10g014700.1 Cre10g1470 510772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g1470 360 Pfam Protein kinase domain 73 345 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre10g1470 360 Gene3D Phosphorylase Kinase; domain 1 36 148 - -
Cre10g1470 360 ProSiteProfiles Protein kinase domain profile. 70 351 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre10g1470 360 ProSitePatterns Protein kinases ATP-binding region signature. 76 99 IPR017441 GO:0005524(InterPro)
Cre10g1470 360 SUPERFAMILY Protein kinase-like (PK-like) 48 353 IPR011009 -
Cre10g1470 360 PANTHER OS01G0750732 PROTEIN 12 351 IPR050885 -
Cre10g1470 360 FunFam receptor-like serine/threonine-protein kinase NCRK 149 359 - -
Cre10g1470 360 PIRSF ILK 40 359 - -
Cre10g1470 360 CDD STKc_IRAK 76 348 - -
Cre10g1470 360 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre10g1470 360 Gene3D Transferase(Phosphotransferase) domain 1 149 359 - -
Cre10g1470 360 FunFam serine/threonine-protein kinase PBS1-like 38 148 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre10g1470 Cre-Chr10:28563898 Cre11g2267 Cre-Chr11:34447006 4.20E-75 dispersed
Cre10g1949 Cre-Chr10:34247995 Cre10g1470 Cre-Chr10:28563898 2.90E-63 dispersed
Cre10g1470 Cre-Chr10:28563898 Cre10g1471 Cre-Chr10:28570798 6.70E-64 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64472 PF00069 Pkinase 1.20E-50 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g1470 - - - 0.0