Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g1471 ATGGGGGCGATTTTGGCGGTTTCAGTCGTTCAAACGCTGCTATTTTTGGCTTTCTTCTACTTGGCGGCTTCCTATACTGATTCCCACGATTCGTCGGTTCTTCAATCCTTGAAAGATGGATGGCAAAATACACCACCAAGCTGGGGAACAACAAATGATCCATGTGGAGCTCCCTGGGAAGGAGTGATTTGCAAGAACTCAAGAGTAGTTGCATTGAAATTATCAAGTATGGGCCTAAAAGGTAAACTTGGTGGTGACATTGGAGGCCTTACTGAACTGAGATCATTGGACCTTGCAGCCAATCGAGACCTCATTGGTTCAATCTCTTCAGCTCTAGGGAGTTTGTTGAAATTAGAGACCTTGATCCTTTCGACGTGTGGATTTAGTGGCAATATTCCGGAAGAATTGGGCAATCTTACTGAGTTAACCTTCTTGTCTTTATATTCTAACAACTTCACTGGTACTATACCGGCAACTCTGGGAAAACTCTCCAATCTATACTGGCTAGACCTGGCAGATAATCAGTTGACTGGTGCTCTCCCAGTTTCCACTTCAGGATCTTCGGGTCTAGATCGACTTTTTAAGGCTAAACATTTTCATTTCAGCAAAAACCAGTTATCAGGTACCATTCCACCTGAACTTTTTCGCTCTGAGATGGTATTATTACACATATTATTTGATGGAAATAATTTTTCTGGGAGTATCCCACCAACATTGGGACTTGTTAAGACCCTTGAGGTTCTTCGACTTGATCGAAATTCTTTAACAGGAAATGTCCCATCCACTCTAAGCAACCTAATAAATGTGAATGAATTGCATTTAGCCAACAATAAGCTGACAGGTCCACTACCAAACTTAACTCAAATGAGTTCACTAAATTACGTGGATCTTAGTAACAACTCATTTAGCTCATCAGTAGCTCCGGAATGGTTCTCAAATCTACAATCTCTCACCACTCTTATTGTTGAATATGGATCAATACGGGGAAATCTGCCAGAAGGAATCTTTAGCTTACCACGTATCCAACAAGTAAAACTGAAGAATAATGCATTTAGTGGGACATTATATATGGGTGACAGCATCGGCCAACTGTTGCAGCTAGTCGATTTGCAAAATAACAATATTTCCTCAGTTACCTCTTCGGGATATACTAACGCTTTGATGCTGACAGGAAATCCTGTGTGTGATGCTAATTTCCTCTCAAATACAAACTATTGCCAGCTTCAACAGCAACAAGCAAAACCTTATACTACCAGCCTTGTCAACTGTGGCAGTAAGTCATGTCCTTCTGATGAGCAGCTGAACCCTCGGAGTTGTGAGTGTGCCTATCCATATGAAGGGACTTTATACTTTAGAGGACCCTCTTTCCGGGAATTGTCCAATATAACTCTGTTTCACTTATTGGAAATGAGCCTTTTGGAAAAATTCAACCGAACGGCGTCTATTCGAAACCCTTTCTTTAATGCTGATGATTATCTTCAGATACAGCTTGCACTTTTTCCAGCCAATGATAAGTATTTCAACAGGGAAGACATTCAGTGGATTGGTTTTGATTTGCACAGTCAAAATTACAAACCTCCCGACAAGTTTGGGCCATATTACTTCTTTGCGTCTCCTTATCCCTTTTCAGACATCGATGAGGGATCAACTTCAACCAACACTGGGGTGATAATTGGAATAGCTGTTGGCTGTGCCTTTCTTGTTCTCTGCCTCATTGGAATTGGAACATATGCAATTCAACAAAAGAGACGTGCAGAAAAGGCCAAGCCAAATGCTTTCTGGGTGCCAAGTGGAAACGATAGCGGAAGCGCACCACAATTAAAGGGAGCCAGATGGTTTTCTTATGATGAACTTAAAAAATGCACAGATAATTTCTCCACCAGTAATGTGATAGGATCGGGAGGATTTGGCATGGTATACAGAGGAACACTGGTGGATGGAAAAGTAGTTGCAATCAAAAGAGCTCAACAAGGATCAATGCAGGGTGGCCTCGAGTTCAAGACGGAAATTGAGCTGCTTTCACGAGTTCATCACAAGAATCTTCTAGGCCTAGTGGGATTTTGTTCCGAACAAGGAGAACAGATTCTTGTTTATGAGTTCATGCCTAATGGGACACTTAGACAGAGCCTAGCTGGAAAATGTGGTATTTATCTTGATTGGAAGAGAAGGCTTCGTATCGCGCTGGGGTCGGCCAGAGGACTGACTTACTTACACGAGCTTGCTAATCCTCCCATAATTCATAGAGATGTTAAGTCCACCAACATTTTACTAGATGAACGTTTAAATGCAAAGGTTGCTGATTTTGGCTTGTCCAAGCTTGTCTCAGACAGTGTAAAGGGACATGTTTCTACTCAAGTCAAAGGCACATTGGGTTATTTGGATCCTGAATATTACATGAGTCAACAATTGACGGAGAAAAGTGACGTGTATAGTTTTGGAGTAGTTATGTTGGAATTACTAACTGCTAAGCTGCCAATTGAAAAAGGGAAGTACATAGTTCGCGAGGTACGTATGTCGATGAATAAGAGTGATGAAGAATATTACGGTTTAAAGCACATAATAGATGCAGCCATAATCGATAATACGACGAATCTTATCGGGTTTGGAAAGTTCTTAGAGTTGGCCATGCAATGTGTTGAAGAAGCAGCCGCAGACCGGCCCACAATGAGTGAAGTGGTTAAAACAATTGAAAACATTTTGCAGAATGATGGAATAAATACAACCTCAACATCAGCATCCTCATCTGCCACAGACTTCGGGACTTCCAAAACTGCTTCTAGACATCCTTATAATGATGCTTTACAGAAAGAGAGTGTCAACAAGAACAGCCAATGA 2835 41.45 MGAILAVSVVQTLLFLAFFYLAASYTDSHDSSVLQSLKDGWQNTPPSWGTTNDPCGAPWEGVICKNSRVVALKLSSMGLKGKLGGDIGGLTELRSLDLAANRDLIGSISSALGSLLKLETLILSTCGFSGNIPEELGNLTELTFLSLYSNNFTGTIPATLGKLSNLYWLDLADNQLTGALPVSTSGSSGLDRLFKAKHFHFSKNQLSGTIPPELFRSEMVLLHILFDGNNFSGSIPPTLGLVKTLEVLRLDRNSLTGNVPSTLSNLINVNELHLANNKLTGPLPNLTQMSSLNYVDLSNNSFSSSVAPEWFSNLQSLTTLIVEYGSIRGNLPEGIFSLPRIQQVKLKNNAFSGTLYMGDSIGQLLQLVDLQNNNISSVTSSGYTNALMLTGNPVCDANFLSNTNYCQLQQQQAKPYTTSLVNCGSKSCPSDEQLNPRSCECAYPYEGTLYFRGPSFRELSNITLFHLLEMSLLEKFNRTASIRNPFFNADDYLQIQLALFPANDKYFNREDIQWIGFDLHSQNYKPPDKFGPYYFFASPYPFSDIDEGSTSTNTGVIIGIAVGCAFLVLCLIGIGTYAIQQKRRAEKAKPNAFWVPSGNDSGSAPQLKGARWFSYDELKKCTDNFSTSNVIGSGGFGMVYRGTLVDGKVVAIKRAQQGSMQGGLEFKTEIELLSRVHHKNLLGLVGFCSEQGEQILVYEFMPNGTLRQSLAGKCGIYLDWKRRLRIALGSARGLTYLHELANPPIIHRDVKSTNILLDERLNAKVADFGLSKLVSDSVKGHVSTQVKGTLGYLDPEYYMSQQLTEKSDVYSFGVVMLELLTAKLPIEKGKYIVREVRMSMNKSDEEYYGLKHIIDAAIIDNTTNLIGFGKFLELAMQCVEEAAADRPTMSEVVKTIENILQNDGINTTSTSASSSATDFGTSKTASRHPYNDALQKESVNKNSQ 944
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 28570798 28577499 - CrPI670011_10g014710.1 Cre10g1471 510773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g1471 944 PANTHER RECEPTOR-LIKE PROTEIN 55 43 897 - -
Cre10g1471 944 ProSiteProfiles Protein kinase domain profile. 625 900 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre10g1471 944 ProSitePatterns Protein kinases ATP-binding region signature. 631 653 IPR017441 GO:0005524(InterPro)
Cre10g1471 944 CDD STKc_IRAK 631 899 - -
Cre10g1471 944 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 701 914 - -
Cre10g1471 944 SMART serkin_6 625 879 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre10g1471 944 Gene3D Phosphorylase Kinase; domain 1 597 700 - -
Cre10g1471 944 Gene3D Ribonuclease Inhibitor 27 221 IPR032675 -
Cre10g1471 944 ProSitePatterns Serine/Threonine protein kinases active-site signature. 745 757 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre10g1471 944 SUPERFAMILY Protein kinase-like (PK-like) 610 911 IPR011009 -
Cre10g1471 944 SUPERFAMILY L domain-like 39 303 - -
Cre10g1471 944 FunFam Leucine-rich repeat protein kinase family protein 595 700 - -
Cre10g1471 944 SUPERFAMILY L domain-like 286 394 - -
Cre10g1471 944 Gene3D Transferase(Phosphotransferase) domain 1 701 926 - -
Cre10g1471 944 Pfam Protein tyrosine and serine/threonine kinase 627 895 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre10g1471 944 Gene3D Ribonuclease Inhibitor 286 434 IPR032675 -
Cre10g1471 944 FunFam Leucine-rich repeat family protein 29 185 - -
Cre10g1471 944 MobiDBLite consensus disorder prediction 907 944 - -
Cre10g1471 944 Gene3D Ribonuclease Inhibitor 222 285 IPR032675 -
Cre10g1471 944 FunFam Predicted protein 188 409 - -
Cre10g1471 944 Pfam Leucine Rich Repeat 142 163 IPR001611 GO:0005515(InterPro)
Cre10g1471 944 Pfam Leucine Rich Repeat 117 139 IPR001611 GO:0005515(InterPro)
Cre10g1471 944 Pfam Leucine Rich Repeat 245 266 IPR001611 GO:0005515(InterPro)
Cre10g1471 944 Pfam Leucine Rich Repeat 291 314 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0349 Cre-Chr2:589792 Cre10g1471 Cre-Chr10:28570798 2.10E-230 dispersed
Cre04g0723 Cre-Chr4:25370642 Cre10g1471 Cre-Chr10:28570798 7.90E-94 dispersed
Cre10g1471 Cre-Chr10:28570798 Cre10g2392 Cre-Chr10:37962893 0.00E+00 dispersed
Cre10g1470 Cre-Chr10:28563898 Cre10g1471 Cre-Chr10:28570798 6.70E-64 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64473 PF07714 PK_Tyr_Ser-Thr 2.70E-45 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g1471 - - - 0.0