Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g1499 ATGAACGATCTTCTTTCGGATTCCTTTGAGATCCCTCGGGGTCAACCTTCTAGAGGAGGAGACATTGAGCTAGGAACAAATGTTCCTACTAGTGGAGGGGATGGCTTGGAGGATTTCTTTAAAAAGGTTCAAGAGATTGAAAAACAGAACGAGAAGCTGGATAGGCTATTGAGAAAGCTCCAGGATTCACATGAGGAGTCCAAAGCTGTGACTAAAGCTCCGGCAATGAAAGCAATCAAGCAGCGGATGGAAAAAGATGTCGATGAAGTTGGAAAAGTTGCACGTTTTGTGAAGACCAAAGTCGAAGAACTTGACAGAGAGAATCTGGCAAATAGGCAGAGGCCCGGGTGTGGAAAAGGATCAGGTGTAGATAGATCAAGAACAGCAACTACTCTTTCCTTAAAAAAGAAGTTAAAAGACAAGATGACTGAATTCCAGATTTTACGGGAAAAAATCCATCAAGAGTACCGGGAAGTTGTTGAGAGACGGGTTTTCACAGTCACGGGCGCTAGGGCTGACGAAGAGACCATCGAGAAATTAATTGAAACTGGGGACAGTGAACAAATTTTTCAGAAGGCAATTCAAGAACAAGGGCGAGGACAGGTAATGGACACTCTAGCTGAAATTCAAGAGCGTCACAGTGCAGTTAGAGAACTGGAGAGGAAGTTACTCGAGCTACAGCAGGTATTTCTCGACATGGCAGTATTGGTGGATGCGCAAGGGGATATGCTCGACAATATCGAATCACATGTTACAAGTGCAGTAGATCATGTGCAACAAGGGAATACTGCTCTTCAAAAGGCAAAGAAGCTGCAAAAGAATTCTAGGAAATGGATGTGCATTGCCATCATAATCCTTCTAATCATTGTTGTGGTCATAGTAGTGGGAGTCCTTAAGCCATGGAATAATGGAGAGAGTCGCCCTCTGCTATCCCTCTCCTTCCCCTGTTTCTCTCAGAAGCCCAAATCCCATCGGCCGCTGCCGTTCCTCTGGCTGAAAGCATACCGCTCTCTAATAGTAGATTGGGAAGATTCTATGGAGTTAGACGCTGTTTCTGTTTCTTTTTATGTTTCTATTACTCTGTCTGATTGGCGCTGCTTGTTCTCTTTGGCAGTTTTGATTCAAATGACTGCATTGTCATTTCTGAGGCCAAGAACATCTGCTAAGTTCTCCTTGGTTTTGGGCATTTCCCCTCAAATTTACGAGAAATTTGGCTTATTCTGCCCCAAGATTACCAAATCCTTCCTGAATCCATGTGCCCACCAATCGCATATTCAAAGCTTTTGGAGGGTTTTTCCATTAGGCGTACTGTATTCGACTCAATCCTCAAAACTTCCTGAATATGAAATGCCTACCGTCACCTGGGGAGCTGTTCAAGGGCGCAAAGAAAAACTTGTGTCCCGAGTCATAATATGTGACTATTTAAAGAGTTTGGGGATTATTCCTGATGAATTAGAACACTTGGAGCTGCCTTCTACAGTTGAAGTCATGAGAGAGCGTGTCGAGTTTCTTCAGAAGTTAGGATTGACTATCGATGACATTAATGAGTTCCCATTAATGCTAGGCTGTAGTGTTCGCAAAAATATAATACCTGTTCTAGGTTACTTGGAGAAAATTGGGATTCCAAGGCCAAAACTTGGAGAATTTATTAAGAATTATCCACAGGTCTTGCATGCCAGTGTCATTGTTGAGCTTGCTCCTGTTGTTAAGCTTCTTCGTGGGCTCGATGTGGAGAAAGAAGATATTGGATATGTCCTACAGAAATACCCTGAGCTTCTGGGTTTCAAGCTTGAGGGGACAATGAGTACATCTGTTGCGTATCTTGTGAGTATAGGTGTTAATCCGAGGGATATTGGACCAATGGTCACACAATACCCGTACTTTTTGGGGATGAGAGTTGGAACCATGATCAAGCCCCTTGTTGAGTTTATTGTTTCTCTAGGTTTGCCAAAGAAGATAGTAGCAAGAATGCTCGAGAAGCGAGCATACATACTCGGTTACGATCTTGAAGAGACTGTGAAACCCAATATAGATTGCTTGCTAAGCTTTGGGATTAGGAAGGAGCTGCTTCCCTCAGTGATTGCACAGTATCCACAAATCCTTGGGTTGCCTTTGAAAGCTAAGTTGTCTTCTCAGCAATTCTTCTTTGACCTAAAGCTCAAGATTGATCCTGCAGGGTTCGCACAAGTGATAGAAAAAATGCCACAGATAGTCAGCCTTCACCAACACGTGATCATTAAACCAGCAGAGTTCTTTCTTGGACGCGGTATACTCTCCTCTGATGTAGCTAAGATGATCATTAAATGTCCCCAGCTAGTCGCTTGTCGTGTAGAACTCATGAAAAACAGTTACTACTTCTTCAAGTCTGAGATGGGCAGGCCAATTAAAGAGCTGGTCGACTTCCCCGAATATTTTACGTACAGTTTGGAATCGAGGATAAAACCGAGGTATCAGAGGCTGCAGAGTAAGGGAATCAGGTGTTCATTAAATTGGTTTCTCAACTGCAGTGATCAAAGATTTGAGGAGAGATTGAAGGGTGAATTCATTGAAACAGAGAGTTTGAGGCCATCATTTTGTATGGGAGGGAGATTAGAGCTACCAAGGAATGAGATTATTGTGTCAGATGATGAGCTTGAGGAGGATGAGTGTGATGAACAACTTCACAGACGCATTGTTTCTCTTTAG 2685 43.13 MNDLLSDSFEIPRGQPSRGGDIELGTNVPTSGGDGLEDFFKKVQEIEKQNEKLDRLLRKLQDSHEESKAVTKAPAMKAIKQRMEKDVDEVGKVARFVKTKVEELDRENLANRQRPGCGKGSGVDRSRTATTLSLKKKLKDKMTEFQILREKIHQEYREVVERRVFTVTGARADEETIEKLIETGDSEQIFQKAIQEQGRGQVMDTLAEIQERHSAVRELERKLLELQQVFLDMAVLVDAQGDMLDNIESHVTSAVDHVQQGNTALQKAKKLQKNSRKWMCIAIIILLIIVVVIVVGVLKPWNNGESRPLLSLSFPCFSQKPKSHRPLPFLWLKAYRSLIVDWEDSMELDAVSVSFYVSITLSDWRCLFSLAVLIQMTALSFLRPRTSAKFSLVLGISPQIYEKFGLFCPKITKSFLNPCAHQSHIQSFWRVFPLGVLYSTQSSKLPEYEMPTVTWGAVQGRKEKLVSRVIICDYLKSLGIIPDELEHLELPSTVEVMRERVEFLQKLGLTIDDINEFPLMLGCSVRKNIIPVLGYLEKIGIPRPKLGEFIKNYPQVLHASVIVELAPVVKLLRGLDVEKEDIGYVLQKYPELLGFKLEGTMSTSVAYLVSIGVNPRDIGPMVTQYPYFLGMRVGTMIKPLVEFIVSLGLPKKIVARMLEKRAYILGYDLEETVKPNIDCLLSFGIRKELLPSVIAQYPQILGLPLKAKLSSQQFFFDLKLKIDPAGFAQVIEKMPQIVSLHQHVIIKPAEFFLGRGILSSDVAKMIIKCPQLVACRVELMKNSYYFFKSEMGRPIKELVDFPEYFTYSLESRIKPRYQRLQSKGIRCSLNWFLNCSDQRFEERLKGEFIETESLRPSFCMGGRLELPRNEIIVSDDELEEDECDEQLHRRIVSL 894
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 28862408 28881784 - CrPI670011_10g014990.1 Cre10g1499 510801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g1499 894 Gene3D - 36 164 - -
Cre10g1499 894 Pfam Syntaxin 38 241 IPR006011 GO:0016020(InterPro)
Cre10g1499 894 Gene3D Transcription termination factor 3, mitochondrial 638 850 IPR038538 -
Cre10g1499 894 Gene3D Transcription termination factor 3, mitochondrial 498 637 IPR038538 -
Cre10g1499 894 Coils Coil 36 70 - -
Cre10g1499 894 SMART tSNARE_6 201 268 IPR000727 -
Cre10g1499 894 Pfam SNARE domain 242 294 IPR000727 -
Cre10g1499 894 Pfam mTERF 533 841 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cre10g1499 894 ProSitePatterns Syntaxin / epimorphin family signature. 212 251 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Cre10g1499 894 CDD SNARE_syntaxin1-like 205 267 - -
Cre10g1499 894 MobiDBLite consensus disorder prediction 1 34 - -
Cre10g1499 894 FunFam Syntaxin 132 199 299 - -
Cre10g1499 894 FunFam Transcription termination factor mterf4, chloroplastic 497 634 - -
Cre10g1499 894 FunFam Syntaxin 132 31 160 - -
Cre10g1499 894 PANTHER CGI-12 PROTEIN-RELATED 473 573 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cre10g1499 894 Coils Coil 209 229 - -
Cre10g1499 894 Gene3D - 198 299 - -
Cre10g1499 894 SMART mt_12 547 578 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cre10g1499 894 SMART mt_12 655 686 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cre10g1499 894 SMART mt_12 763 794 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cre10g1499 894 SMART mt_12 619 650 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cre10g1499 894 SMART mt_12 511 542 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cre10g1499 894 SMART mt_12 691 723 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cre10g1499 894 SMART mt_12 728 758 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cre10g1499 894 SMART mt_12 583 614 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cre10g1499 894 SMART mt_12 795 826 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cre10g1499 894 SUPERFAMILY t-snare proteins 36 261 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Cre10g1499 894 FunFam Transcription termination factor MTERF4, chloroplastic 635 849 - -
Cre10g1499 894 SMART SynN_4 31 157 IPR006011 GO:0016020(InterPro)
Cre10g1499 894 CDD SynN 36 193 IPR006011 GO:0016020(InterPro)
Cre10g1499 894 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 206 268 IPR000727 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0276 Cre-Chr1:2128409 Cre10g1499 Cre-Chr10:28862408 4.00E-50 dispersed
Cre02g0866 Cre-Chr2:5615452 Cre10g1499 Cre-Chr10:28862408 7.50E-15 dispersed
Cre02g1182 Cre-Chr2:11140153 Cre10g1499 Cre-Chr10:28862408 4.10E-37 dispersed
Cre02g1184 Cre-Chr2:11188359 Cre10g1499 Cre-Chr10:28862408 2.40E-87 dispersed
Cre03g0372 Cre-Chr3:2146951 Cre10g1499 Cre-Chr10:28862408 1.60E-08 dispersed
Cre04g1134 Cre-Chr4:29965498 Cre10g1499 Cre-Chr10:28862408 8.50E-11 dispersed
Cre10g1499 Cre-Chr10:28862408 Cre10g1939 Cre-Chr10:34055389 4.90E-64 dispersed
Cre10g1499 Cre-Chr10:28862408 Cre04g1143 Cre-Chr4:30039475 2.70E-70 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54542 PF02536 mTERF 6.30E-105 No_clan Cre TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g1499 K15031 - csv:101203314 971.844