Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g1499 ATGAACGATCTTCTTTCGGATTCCTTTGAGATCCCTCGGGGTCAACCTTCTAGAGGAGGAGACATTGAGCTAGGAACAAATGTTCCTACTAGTGGAGGGGATGGCTTGGAGGATTTCTTTAAAAAGGTTCAAGAGATTGAAAAACAGAACGAGAAGCTGGATAGGCTATTGAGAAAGCTCCAGGATTCACATGAGGAGTCCAAAGCTGTGACTAAAGCTCCGGCAATGAAAGCAATCAAGCAGCGGATGGAAAAAGATGTCGATGAAGTTGGAAAAGTTGCACGTTTTGTGAAGACCAAAGTCGAAGAACTTGACAGAGAGAATCTGGCAAATAGGCAGAGGCCCGGGTGTGGAAAAGGATCAGGTGTAGATAGATCAAGAACAGCAACTACTCTTTCCTTAAAAAAGAAGTTAAAAGACAAGATGACTGAATTCCAGATTTTACGGGAAAAAATCCATCAAGAGTACCGGGAAGTTGTTGAGAGACGGGTTTTCACAGTCACGGGCGCTAGGGCTGACGAAGAGACCATCGAGAAATTAATTGAAACTGGGGACAGTGAACAAATTTTTCAGAAGGCAATTCAAGAACAAGGGCGAGGACAGGTAATGGACACTCTAGCTGAAATTCAAGAGCGTCACAGTGCAGTTAGAGAACTGGAGAGGAAGTTACTCGAGCTACAGCAGGTATTTCTCGACATGGCAGTATTGGTGGATGCGCAAGGGGATATGCTCGACAATATCGAATCACATGTTACAAGTGCAGTAGATCATGTGCAACAAGGGAATACTGCTCTTCAAAAGGCAAAGAAGCTGCAAAAGAATTCTAGGAAATGGATGTGCATTGCCATCATAATCCTTCTAATCATTGTTGTGGTCATAGTAGTGGGAGTCCTTAAGCCATGGAATAATGGAGAGAGTCGCCCTCTGCTATCCCTCTCCTTCCCCTGTTTCTCTCAGAAGCCCAAATCCCATCGGCCGCTGCCGTTCCTCTGGCTGAAAGCATACCGCTCTCTAATAGTAGATTGGGAAGATTCTATGGAGTTAGACGCTGTTTCTGTTTCTTTTTATGTTTCTATTACTCTGTCTGATTGGCGCTGCTTGTTCTCTTTGGCAGTTTTGATTCAAATGACTGCATTGTCATTTCTGAGGCCAAGAACATCTGCTAAGTTCTCCTTGGTTTTGGGCATTTCCCCTCAAATTTACGAGAAATTTGGCTTATTCTGCCCCAAGATTACCAAATCCTTCCTGAATCCATGTGCCCACCAATCGCATATTCAAAGCTTTTGGAGGGTTTTTCCATTAGGCGTACTGTATTCGACTCAATCCTCAAAACTTCCTGAATATGAAATGCCTACCGTCACCTGGGGAGCTGTTCAAGGGCGCAAAGAAAAACTTGTGTCCCGAGTCATAATATGTGACTATTTAAAGAGTTTGGGGATTATTCCTGATGAATTAGAACACTTGGAGCTGCCTTCTACAGTTGAAGTCATGAGAGAGCGTGTCGAGTTTCTTCAGAAGTTAGGATTGACTATCGATGACATTAATGAGTTCCCATTAATGCTAGGCTGTAGTGTTCGCAAAAATATAATACCTGTTCTAGGTTACTTGGAGAAAATTGGGATTCCAAGGCCAAAACTTGGAGAATTTATTAAGAATTATCCACAGGTCTTGCATGCCAGTGTCATTGTTGAGCTTGCTCCTGTTGTTAAGCTTCTTCGTGGGCTCGATGTGGAGAAAGAAGATATTGGATATGTCCTACAGAAATACCCTGAGCTTCTGGGTTTCAAGCTTGAGGGGACAATGAGTACATCTGTTGCGTATCTTGTGAGTATAGGTGTTAATCCGAGGGATATTGGACCAATGGTCACACAATACCCGTACTTTTTGGGGATGAGAGTTGGAACCATGATCAAGCCCCTTGTTGAGTTTATTGTTTCTCTAGGTTTGCCAAAGAAGATAGTAGCAAGAATGCTCGAGAAGCGAGCATACATACTCGGTTACGATCTTGAAGAGACTGTGAAACCCAATATAGATTGCTTGCTAAGCTTTGGGATTAGGAAGGAGCTGCTTCCCTCAGTGATTGCACAGTATCCACAAATCCTTGGGTTGCCTTTGAAAGCTAAGTTGTCTTCTCAGCAATTCTTCTTTGACCTAAAGCTCAAGATTGATCCTGCAGGGTTCGCACAAGTGATAGAAAAAATGCCACAGATAGTCAGCCTTCACCAACACGTGATCATTAAACCAGCAGAGTTCTTTCTTGGACGCGGTATACTCTCCTCTGATGTAGCTAAGATGATCATTAAATGTCCCCAGCTAGTCGCTTGTCGTGTAGAACTCATGAAAAACAGTTACTACTTCTTCAAGTCTGAGATGGGCAGGCCAATTAAAGAGCTGGTCGACTTCCCCGAATATTTTACGTACAGTTTGGAATCGAGGATAAAACCGAGGTATCAGAGGCTGCAGAGTAAGGGAATCAGGTGTTCATTAAATTGGTTTCTCAACTGCAGTGATCAAAGATTTGAGGAGAGATTGAAGGGTGAATTCATTGAAACAGAGAGTTTGAGGCCATCATTTTGTATGGGAGGGAGATTAGAGCTACCAAGGAATGAGATTATTGTGTCAGATGATGAGCTTGAGGAGGATGAGTGTGATGAACAACTTCACAGACGCATTGTTTCTCTTTAG 2685 43.13 MNDLLSDSFEIPRGQPSRGGDIELGTNVPTSGGDGLEDFFKKVQEIEKQNEKLDRLLRKLQDSHEESKAVTKAPAMKAIKQRMEKDVDEVGKVARFVKTKVEELDRENLANRQRPGCGKGSGVDRSRTATTLSLKKKLKDKMTEFQILREKIHQEYREVVERRVFTVTGARADEETIEKLIETGDSEQIFQKAIQEQGRGQVMDTLAEIQERHSAVRELERKLLELQQVFLDMAVLVDAQGDMLDNIESHVTSAVDHVQQGNTALQKAKKLQKNSRKWMCIAIIILLIIVVVIVVGVLKPWNNGESRPLLSLSFPCFSQKPKSHRPLPFLWLKAYRSLIVDWEDSMELDAVSVSFYVSITLSDWRCLFSLAVLIQMTALSFLRPRTSAKFSLVLGISPQIYEKFGLFCPKITKSFLNPCAHQSHIQSFWRVFPLGVLYSTQSSKLPEYEMPTVTWGAVQGRKEKLVSRVIICDYLKSLGIIPDELEHLELPSTVEVMRERVEFLQKLGLTIDDINEFPLMLGCSVRKNIIPVLGYLEKIGIPRPKLGEFIKNYPQVLHASVIVELAPVVKLLRGLDVEKEDIGYVLQKYPELLGFKLEGTMSTSVAYLVSIGVNPRDIGPMVTQYPYFLGMRVGTMIKPLVEFIVSLGLPKKIVARMLEKRAYILGYDLEETVKPNIDCLLSFGIRKELLPSVIAQYPQILGLPLKAKLSSQQFFFDLKLKIDPAGFAQVIEKMPQIVSLHQHVIIKPAEFFLGRGILSSDVAKMIIKCPQLVACRVELMKNSYYFFKSEMGRPIKELVDFPEYFTYSLESRIKPRYQRLQSKGIRCSLNWFLNCSDQRFEERLKGEFIETESLRPSFCMGGRLELPRNEIIVSDDELEEDECDEQLHRRIVSL 894
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 28862408 28881784 - CrPI670011_10g014990.1 Cre10g1499 510801

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g1499 894 Gene3D - 36 164 - -
Cre10g1499 894 Pfam Syntaxin 38 241 IPR006011 GO:0016020(InterPro)
Cre10g1499 894 Gene3D Transcription termination factor 3, mitochondrial 638 850 IPR038538 -
Cre10g1499 894 Gene3D Transcription termination factor 3, mitochondrial 498 637 IPR038538 -
Cre10g1499 894 Coils Coil 36 70 - -
Cre10g1499 894 SMART tSNARE_6 201 268 IPR000727 -
Cre10g1499 894 Pfam SNARE domain 242 294 IPR000727 -
Cre10g1499 894 Pfam mTERF 533 841 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cre10g1499 894 ProSitePatterns Syntaxin / epimorphin family signature. 212 251 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Cre10g1499 894 CDD SNARE_syntaxin1-like 205 267 - -
Cre10g1499 894 MobiDBLite consensus disorder prediction 1 34 - -
Cre10g1499 894 FunFam Syntaxin 132 199 299 - -
Cre10g1499 894 FunFam Transcription termination factor mterf4, chloroplastic 497 634 - -
Cre10g1499 894 FunFam Syntaxin 132 31 160 - -
Cre10g1499 894 PANTHER CGI-12 PROTEIN-RELATED 473 573 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cre10g1499 894 Coils Coil 209 229 - -
Cre10g1499 894 Gene3D - 198 299 - -
Cre10g1499 894 SMART mt_12 547 578 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cre10g1499 894 SMART mt_12 655 686 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cre10g1499 894 SMART mt_12 763 794 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cre10g1499 894 SMART mt_12 619 650 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cre10g1499 894 SMART mt_12 511 542 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cre10g1499 894 SMART mt_12 691 723 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cre10g1499 894 SMART mt_12 728 758 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cre10g1499 894 SMART mt_12 583 614 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cre10g1499 894 SMART mt_12 795 826 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cre10g1499 894 SUPERFAMILY t-snare proteins 36 261 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Cre10g1499 894 FunFam Transcription termination factor MTERF4, chloroplastic 635 849 - -
Cre10g1499 894 SMART SynN_4 31 157 IPR006011 GO:0016020(InterPro)
Cre10g1499 894 CDD SynN 36 193 IPR006011 GO:0016020(InterPro)
Cre10g1499 894 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 206 268 IPR000727 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g1499 K15031 - - csv:101203314 971.844
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0276 Cre-Chr1:2128409 Cre10g1499 Cre-Chr10:28862408 4.00E-50 dispersed
Cre02g0866 Cre-Chr2:5615452 Cre10g1499 Cre-Chr10:28862408 7.50E-15 dispersed
Cre02g1182 Cre-Chr2:11140153 Cre10g1499 Cre-Chr10:28862408 4.10E-37 dispersed
Cre02g1184 Cre-Chr2:11188359 Cre10g1499 Cre-Chr10:28862408 2.40E-87 dispersed
Cre03g0372 Cre-Chr3:2146951 Cre10g1499 Cre-Chr10:28862408 1.60E-08 dispersed
Cre04g1134 Cre-Chr4:29965498 Cre10g1499 Cre-Chr10:28862408 8.50E-11 dispersed
Cre10g1499 Cre-Chr10:28862408 Cre10g1939 Cre-Chr10:34055389 4.90E-64 dispersed
Cre10g1499 Cre-Chr10:28862408 Cre04g1143 Cre-Chr4:30039475 2.70E-70 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre08g1226 . 8 363 SNARE and Associated Proteins AT3G24350 55.8 6.3e-87 318.2
Cre04g0696 . 1 309 SNARE and Associated Proteins AT1G08560 69.0 7.3e-100 360.9
Cre04g1576 . 557 859 SNARE and Associated Proteins AT2G18260 55.5 2.4e-87 319.3
Cre10g1939 . 19 279 SNARE and Associated Proteins AT3G11820 80.8 3.7e-115 411.8
Cre04g1143 . 26 282 SNARE and Associated Proteins AT3G11820 73.2 2.5e-103 372.5
Cre03g0844 . 31 281 SNARE and Associated Proteins AT3G11820 66.5 2.0e-92 336.3
Cre10g1499 . 30 284 SNARE and Associated Proteins AT3G11820 52.9 4.0e-69 258.8
Cre10g1939 . 1 279 SNARE and Associated Proteins AT3G52400 63.9 6.2e-92 334.7
Cre04g1143 . 33 282 SNARE and Associated Proteins AT3G52400 65.2 6.6e-86 314.7
Cre03g0844 . 1 281 SNARE and Associated Proteins AT3G52400 56.4 6.4e-81 298.1
Cre03g0844 . 1 299 SNARE and Associated Proteins AT4G03330 68.9 1.2e-107 386.7
Cre10g1939 . 1 284 SNARE and Associated Proteins AT4G03330 57.2 3.2e-84 308.9
Cre04g1143 . 1 297 SNARE and Associated Proteins AT4G03330 52.6 2.4e-79 292.7
Cre10g1499 . 1 284 SNARE and Associated Proteins AT4G03330 52.4 1.3e-69 260.4
Cre03g0844 . 1 299 SNARE and Associated Proteins AT1G61290 79.3 1.8e-127 452.6
Cre10g1939 . 1 284 SNARE and Associated Proteins AT1G61290 62.0 2.7e-91 332.4
Cre04g1143 . 1 297 SNARE and Associated Proteins AT1G61290 56.9 4.5e-86 315.1
Cre03g0844 . 1 299 SNARE and Associated Proteins AT1G11250 78.3 3.1e-124 441.8
Cre10g1939 . 1 284 SNARE and Associated Proteins AT1G11250 62.0 1.7e-93 339.7
Cre04g1143 . 1 292 SNARE and Associated Proteins AT1G11250 57.5 3.1e-87 318.9
Cre10g1499 . 1 303 SNARE and Associated Proteins AT3G03800 74.3 1.0e-114 410.2
Cre02g1184 . 1 304 SNARE and Associated Proteins AT3G03800 54.8 6.1e-83 304.7
Cre10g1499 . 1 202 SNARE and Associated Proteins AT5G08080 79.3 3.2e-81 298.5
Cre02g1184 . 1 204 SNARE and Associated Proteins AT5G08080 59.3 8.8e-55 210.7
Cre10g0399 . 1 261 SNARE and Associated Proteins AT5G16830 59.6 2.7e-77 285.8
Cre10g0399 . 1 261 SNARE and Associated Proteins AT5G46860 66.7 3.5e-82 302.0
Cre10g0399 . 1 257 SNARE and Associated Proteins AT4G17730 60.7 1.7e-73 273.1
Cre10g0399 . 65 256 SNARE and Associated Proteins AT1G32270 59.9 4.8e-52 202.2
Cre07g0761 . 84 419 SNARE and Associated Proteins AT5G05760 65.9 1.2e-111 400.2
Cre08g1226 . 8 363 SNARE and Associated Proteins AT3G24350 55.8 6.3e-87 318.2
Cre02g1836 . 1 327 SNARE and Associated Proteins AT5G26980 76.8 5.0e-128 454.5
Cre09g0524 . 1 317 SNARE and Associated Proteins AT5G26980 66.2 6.9e-101 364.4
Cre02g1836 . 1 329 SNARE and Associated Proteins AT4G02195 64.4 3.5e-105 378.6
Cre09g0524 . 1 317 SNARE and Associated Proteins AT4G02195 66.8 3.9e-104 375.2
Cre02g1836 . 1 328 SNARE and Associated Proteins AT3G05710 76.3 4.2e-130 461.5
Cre09g0524 . 1 317 SNARE and Associated Proteins AT3G05710 63.7 2.8e-97 352.4
Cre09g1057 . 92 324 SNARE and Associated Proteins AT1G16240 72.1 2.6e-89 325.5
Cre10g0700 . 979 1200 SNARE and Associated Proteins AT1G16240 68.9 9.7e-81 297.0
Cre09g1057 . 91 324 SNARE and Associated Proteins AT1G79590 71.4 4.2e-88 321.6
Cre10g0700 . 974 1200 SNARE and Associated Proteins AT1G79590 67.4 4.5e-82 301.6
Cre06g0825 . 176 366 SNARE and Associated Proteins AT1G28490 71.7 9.0e-67 250.4
Cre10g2153 . 51 314 SNARE and Associated Proteins AT3G09740 79.7 2.9e-113 405.2
Cre02g2412 . 1 265 SNARE and Associated Proteins AT3G09740 67.8 1.6e-95 346.3
Cre02g2412 . 1 265 SNARE and Associated Proteins AT3G45280 65.9 8.3e-92 334.0
Cre10g2153 . 51 314 SNARE and Associated Proteins AT3G45280 64.4 9.4e-88 320.5
Cre10g2153 . 51 311 SNARE and Associated Proteins AT3G61450 68.2 7.8e-95 344.0
Cre02g2412 . 1 262 SNARE and Associated Proteins AT3G61450 61.4 3.3e-85 312.0
Cre11g1122 . 65 309 SNARE and Associated Proteins AT1G51740 72.5 2.4e-90 328.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006644 1 6 1 1 1 0 1 1 0 1 1 1 2 1 1 1 1 2 3 1 1 1 2 1 1 1 1 1 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54542 PF02536 mTERF 6.30E-105 No_clan Cre TR