Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g1512 ATGGATCAAAGCTCTGAGCTTTACAGATTGTTGGCACAGAACGGAGCCTTCAGCCTGGGCGGCGCCGGCGGGTCCTGCGGCTTTCCGGCGACCCAAAGCATGTCGAGCTCTTCCTCTTATTACCCTTTGGATAAGTCCACGGCGGCGGCCGCCAGTGAGGCAGCGGTGCCGTCGGCCCACGACAGAGCTCTGGCGGCCCTCAAGAATCACAAGGAAGCTGAGAAGCGGAGGAGAGAGAGAATCAACTCTCATCTTGATAAGCTTCGGACTCTTCTTCCTTGTAATTCTAAGACGGACAAGGCATCTCTTCTGGCAAAAGTGGTTGAGCGAGTGAAAGAGCTGAAGAACGAGACGTCGGAGATCGCGGAGCTCGAAAGCTTCCCTTCGGAGACGGACGAGATCAGTGTGCTGTCCGGAGAGCAGTCGGTGGACGGAAGGCTTGTGTTCAAGGCGTCGTTGTGTTGCGAGGACCGCTCCGACCTCATCCCGGACCTCAACGACATCCTTAATTCCCTCCAACTCAAAACCCTTAGGGCTGACATTGTCACGGTGGGTGGCCGGATCCGCAACGTCCTCCTTATCGCTGCCAACGACCACCACAGCCTCGAGTCCGTTCATTTCCTTCAAAATGCCTTGAAATCTCTCCTTGAACGCTCCAATTCTAGCCTTACATCCAAGAGGAGGCGCCTTGTACTTCACCACAAATGA 708 55.37 MDQSSELYRLLAQNGAFSLGGAGGSCGFPATQSMSSSSSYYPLDKSTAAAASEAAVPSAHDRALAALKNHKEAEKRRRERINSHLDKLRTLLPCNSKTDKASLLAKVVERVKELKNETSEIAELESFPSETDEISVLSGEQSVDGRLVFKASLCCEDRSDLIPDLNDILNSLQLKTLRADIVTVGGRIRNVLLIAANDHHSLESVHFLQNALKSLLERSNSSLTSKRRRLVLHHK 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 29056803 29058465 - CrPI670011_10g015120.1 Cre10g1512 510814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g1512 235 CDD bHLH_AtAIG1_like 61 136 - -
Cre10g1512 235 Pfam Helix-loop-helix DNA-binding domain 69 115 IPR011598 GO:0046983(InterPro)
Cre10g1512 235 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 69 124 IPR036638 GO:0046983(InterPro)
Cre10g1512 235 SMART finulus 71 120 IPR011598 GO:0046983(InterPro)
Cre10g1512 235 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 65 114 IPR011598 GO:0046983(InterPro)
Cre10g1512 235 PANTHER TRANSCRIPTION FACTOR BHLH30 44 232 IPR045847 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre10g1512 235 Gene3D - 61 125 IPR036638 GO:0046983(InterPro)
Cre10g1512 235 FunFam transcription factor bHLH30 60 123 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g0943 Cre-Chr3:8202964 Cre10g1512 Cre-Chr10:29056803 2.60E-34 dispersed
Cre06g1819 Cre-Chr6:19924420 Cre10g1512 Cre-Chr10:29056803 1.30E-38 dispersed
Cre08g1111 Cre-Chr8:24296236 Cre10g1512 Cre-Chr10:29056803 4.60E-25 dispersed
Cre10g1512 Cre-Chr10:29056803 Cre11g1091 Cre-Chr11:8368208 2.40E-26 dispersed
Cre10g1512 Cre-Chr10:29056803 Cre05g2478 Cre-Chr5:36175170 2.70E-38 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54545 PF00010 HLH 3.60E-12 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g1512 - - - 0.0