Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre10g1512 | ATGGATCAAAGCTCTGAGCTTTACAGATTGTTGGCACAGAACGGAGCCTTCAGCCTGGGCGGCGCCGGCGGGTCCTGCGGCTTTCCGGCGACCCAAAGCATGTCGAGCTCTTCCTCTTATTACCCTTTGGATAAGTCCACGGCGGCGGCCGCCAGTGAGGCAGCGGTGCCGTCGGCCCACGACAGAGCTCTGGCGGCCCTCAAGAATCACAAGGAAGCTGAGAAGCGGAGGAGAGAGAGAATCAACTCTCATCTTGATAAGCTTCGGACTCTTCTTCCTTGTAATTCTAAGACGGACAAGGCATCTCTTCTGGCAAAAGTGGTTGAGCGAGTGAAAGAGCTGAAGAACGAGACGTCGGAGATCGCGGAGCTCGAAAGCTTCCCTTCGGAGACGGACGAGATCAGTGTGCTGTCCGGAGAGCAGTCGGTGGACGGAAGGCTTGTGTTCAAGGCGTCGTTGTGTTGCGAGGACCGCTCCGACCTCATCCCGGACCTCAACGACATCCTTAATTCCCTCCAACTCAAAACCCTTAGGGCTGACATTGTCACGGTGGGTGGCCGGATCCGCAACGTCCTCCTTATCGCTGCCAACGACCACCACAGCCTCGAGTCCGTTCATTTCCTTCAAAATGCCTTGAAATCTCTCCTTGAACGCTCCAATTCTAGCCTTACATCCAAGAGGAGGCGCCTTGTACTTCACCACAAATGA | 708 | 55.37 | MDQSSELYRLLAQNGAFSLGGAGGSCGFPATQSMSSSSSYYPLDKSTAAAASEAAVPSAHDRALAALKNHKEAEKRRRERINSHLDKLRTLLPCNSKTDKASLLAKVVERVKELKNETSEIAELESFPSETDEISVLSGEQSVDGRLVFKASLCCEDRSDLIPDLNDILNSLQLKTLRADIVTVGGRIRNVLLIAANDHHSLESVHFLQNALKSLLERSNSSLTSKRRRLVLHHK | 235 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 29056803 | 29058465 | - | CrPI670011_10g015120.1 | Cre10g1512 | 510814 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre10g1512 | 235 | CDD | bHLH_AtAIG1_like | 61 | 136 | - | - | |
Cre10g1512 | 235 | Pfam | Helix-loop-helix DNA-binding domain | 69 | 115 | IPR011598 | GO:0046983(InterPro) | |
Cre10g1512 | 235 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 69 | 124 | IPR036638 | GO:0046983(InterPro) | |
Cre10g1512 | 235 | SMART | finulus | 71 | 120 | IPR011598 | GO:0046983(InterPro) | |
Cre10g1512 | 235 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 65 | 114 | IPR011598 | GO:0046983(InterPro) | |
Cre10g1512 | 235 | PANTHER | TRANSCRIPTION FACTOR BHLH30 | 44 | 232 | IPR045847 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre10g1512 | 235 | Gene3D | - | 61 | 125 | IPR036638 | GO:0046983(InterPro) | |
Cre10g1512 | 235 | FunFam | transcription factor bHLH30 | 60 | 123 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre03g0943 | Cre-Chr3:8202964 | Cre10g1512 | Cre-Chr10:29056803 | 2.60E-34 | dispersed | |
Cre06g1819 | Cre-Chr6:19924420 | Cre10g1512 | Cre-Chr10:29056803 | 1.30E-38 | dispersed | |
Cre08g1111 | Cre-Chr8:24296236 | Cre10g1512 | Cre-Chr10:29056803 | 4.60E-25 | dispersed | |
Cre10g1512 | Cre-Chr10:29056803 | Cre11g1091 | Cre-Chr11:8368208 | 2.40E-26 | dispersed | |
Cre10g1512 | Cre-Chr10:29056803 | Cre05g2478 | Cre-Chr5:36175170 | 2.70E-38 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
54545 | PF00010 | HLH | 3.60E-12 | No_clan | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre10g1512 | - | - | - | 0.0 |