Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g1526 ATGGCTTCTGGTAATGGGTTTTATCCCACTGATGAATTCAATTTGGATGCTAAATGGTTGATTGATCCTAAGCATCTTTTTGTTGGGCCAAAGATTGGGGAAGGTGCCCATGCCAAGGTGTATGAGGGAAAATACAAAAATCAGATTGTGGCTATCAAAATGGTGGGTAAAGGAGATACTCCTGAGAGGATGGCCAGAAGAGAATCTCGGTTTGCTAGAGAGGTTGCAATGTTGTCCAAAGTGCAACACAAGAACTTAGTGAAGTTTATTGGCGCTTGCAAGGAACCTATGATGGTTATAGTAACTGAATTACTCACAGGTGGCACATTGCGCAAACATCTCTTGAATTTGAGGCCAAGGAACTTGGAACTTGATGTGGCGATCGGGTTTGCGCTTGATATTGCTCGTGCCATGGAGTGTTTACACTCCCATGGAATTATTCACCGTGACCTTAAACCAGAAAACTTGATATTGACTGCAGACCGTAAAACAGTTAAGCTTGCTGATTTTGGTTTGGCAAGAGAAGAATCAGTAACAGAGATGATGACTGCAGAAACAGGAACATATAGGTGGATGGCTCCAGAGCTCTATAGCACAGTCACTTTAAAACATGGAGATAAGAAGCATTATAATCATAAAGTTGATGCCTACAGCTTTGCCATTGTATTGTGGGAGCTCATCCTTAACAGGCTGCCTTTCGAAGGCATGTCGAATTTACAGGCGGCATATGCAGCTGCTTTTAAGAACATGAGGCCCAGTGCTGAAAACCTTCCAGAGGACTTAGCTTTAATAGTGACATCATGTTGGAGAGAAGATCCAAATACAAGGCCAAACTTCAGCCAGATTATACAGATGCTATTGCAATCCCTCTCTAGAATATCACCACGAGCACCCATGATCCCACCTCGGATATGTGCTTCTGAAAACGTCGTGATGCCACCTGAATCTCCCGGCACAAATTCCTTGATGGCTGTCAGACATGGCTCGGGGGAAGCCACACACGGCATGATCGAAGAAACCCCAAAAAGCTCCTTCTTCTGCTTTAACAAGTGTTACTGA 1059 43.91 MASGNGFYPTDEFNLDAKWLIDPKHLFVGPKIGEGAHAKVYEGKYKNQIVAIKMVGKGDTPERMARRESRFAREVAMLSKVQHKNLVKFIGACKEPMMVIVTELLTGGTLRKHLLNLRPRNLELDVAIGFALDIARAMECLHSHGIIHRDLKPENLILTADRKTVKLADFGLAREESVTEMMTAETGTYRWMAPELYSTVTLKHGDKKHYNHKVDAYSFAIVLWELILNRLPFEGMSNLQAAYAAAFKNMRPSAENLPEDLALIVTSCWREDPNTRPNFSQIIQMLLQSLSRISPRAPMIPPRICASENVVMPPESPGTNSLMAVRHGSGEATHGMIEETPKSSFFCFNKCY 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 29191485 29194927 - CrPI670011_10g015260.1 Cre10g1526 510828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g1526 352 ProSitePatterns Serine/Threonine protein kinases active-site signature. 146 158 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre10g1526 352 CDD STKc_MAP3K-like 32 286 - -
Cre10g1526 352 PANTHER SERINE-THREONINE PROTEIN KINASE 20 290 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Cre10g1526 352 ProSitePatterns Protein kinases ATP-binding region signature. 32 57 IPR017441 GO:0005524(InterPro)
Cre10g1526 352 ProSiteProfiles Protein kinase domain profile. 26 290 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre10g1526 352 Gene3D Transferase(Phosphotransferase) domain 1 108 298 - -
Cre10g1526 352 PRINTS Tyrosine kinase catalytic domain signature 140 158 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre10g1526 352 PRINTS Tyrosine kinase catalytic domain signature 102 115 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre10g1526 352 PRINTS Tyrosine kinase catalytic domain signature 214 236 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre10g1526 352 PRINTS Tyrosine kinase catalytic domain signature 257 279 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre10g1526 352 Gene3D Phosphorylase Kinase; domain 1 14 105 - -
Cre10g1526 352 SMART serkin_6 26 290 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre10g1526 352 Pfam Protein tyrosine and serine/threonine kinase 30 286 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre10g1526 352 FunFam Kinase suppressor of Ras 1 15 105 - -
Cre10g1526 352 SUPERFAMILY Protein kinase-like (PK-like) 18 309 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1551 Cre-Chr4:34121729 Cre10g1526 Cre-Chr10:29191485 1.80E-80 dispersed
Cre10g1526 Cre-Chr10:29191485 Cre10g2370 Cre-Chr10:37805218 4.10E-115 dispersed
Cre01g0525 Cre-Chr1:4536100 Cre10g1526 Cre-Chr10:29191485 3.00E-147 wgd
Cre10g1526 Cre-Chr10:29191485 Cre06g2601 Cre-Chr6:33704064 3.30E-157 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64475 PF07714 PK_Tyr_Ser-Thr 1.10E-56 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g1526 - - - 0.0