Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre10g1535 | ATGAGAATCCACGCCCCGTCACCGTTAAGAAACGAAGATCATACTTACGACGTCGTTTTGCGCGATTTTTGGGATTTTGGGAATTTTGAAGAGGTTTTTCGATTGTTGTGTAGAAATTGCTCGAAAATGGCGGGTCTTGAGGAACTTAAGAAGAAACTTACTCCATTGTTTGATGCTGAAAAGGGGCTTTCTATGGACTCCCCTGTGGACCCTTCTGATTCTTATACGTTTTCAGACAATGGGACTGTTAATTTGCTGAGCCGATCATATGGGGTTTACAATTTTAATGAGCTAGGGTTACAAAAATGCACGTCTTGGCTTGCTGATGATTCAGGGAGTAGTGAGAGAACATATCGATGTGCTTCCCGTGAAATGAGGATATTTGGAGCCATTGGTAGTGGTGCTAGCAGTGTTGTTCAAAGAGCTATCCACATTCCTGCTCATCGAATCATGGCACTAAAGAAGATTAATATCTTCGAAAAGGAGAAAAGACAGCAGCTTCTTACCGAGATAAGGACACTATGCGAAGCGCCCTGTTCTGAGGGTCTTGTGGAGTTTCATGGAGCATTTTATACCCCTGATTCTGGGCAAATAAGCATCGCTTTGGAGTACATGGATGGAGGGTCATTGGCAGATGTCCTGCGTCTGAAAAAATGTATACCCGAGCCTGTCCTTTCATCTATGTTTCAGAAACTTCTTCAAGGTCTAAGTTACCTGCATGGAGTAAGACATTTGGTTCACAGAGATATAAAGCCAGCTAATTTACTAGTAAATCTGAAGGGTGAAGCAAAGATTACGGATTTTGGCATAAGTGCCGGCTTAGAGAATTCAATGGCAATGTGTGCTACTTTCGTTGGAACTGTCACATACATGTCGCCAGAGCGAATTCGAAACGAGAGCTATTCTTATCCAGCTGACATTTGGAGCCTTGGGCTTGCACTCTTTGAGTGTGGTACTGGTGAATTTCCATATTCAGCTACTGAAGGTCTAGTGAACCTCATGTTGCAGATTTTGGATGACCCGTCTCCATCACCATCAAAACATAAGTTTTCGCCGGAGTTTTGCTCTTTTGTCGATGCTTGCTTGCAGAAATATGCAGATGCTAGGCCAACAGCAGAGCAACTGCTTTCACACCCATTTATTAAAAAATATGAGGATGAACAAGTAGACTTGGCAGCATTTGTCCAGAATGTGTTTGATCCAGTACAGAGGATGAAGGACTTGGCAGATATGTTGACAATCCATTATTACTTGCTTTTTGATGGATCTGATGAATTCTGGCACCATACAAAAGCTCTGTACCATGAAAGCTCAAGTTTAAGTTTTTCAGGGAAGCAATTTTCTGGTCCAAGTGATATCTTTGCCAAACTATCAGAAGTTCGAAGTACATTAGCAGGAGACTGGCCTCTTGAAAAACTAGTTCACGTTGTCGAAAAACTCCAATGTCGTGCTCACGGTCGGGATGGAGTTGCCATAAGGGTGTCGGGATCCTTCATCCTTGGGAACCAGTTCCTCATATGTGGAGATGGTGTACAAGTAGAGGGACTGCCAAATTTTAAGGATCTCTCCATTGACATCGAGAACAAATGCCACTGCTGTTTGATCCTGTTTGTGCAAGCTTTAGTGAATCTGCAACAAAATGATCAACTTATCTATGGCTATGTCCACAGATTTCAATCTATCACTGACTTGACCACAAGAGAGTTTAGTAACAAGGAGCTTGCAAAGTTGTTGTCGAGTGATCGAAGTGGATGA | 1755 | 42.62 | MRIHAPSPLRNEDHTYDVVLRDFWDFGNFEEVFRLLCRNCSKMAGLEELKKKLTPLFDAEKGLSMDSPVDPSDSYTFSDNGTVNLLSRSYGVYNFNELGLQKCTSWLADDSGSSERTYRCASREMRIFGAIGSGASSVVQRAIHIPAHRIMALKKINIFEKEKRQQLLTEIRTLCEAPCSEGLVEFHGAFYTPDSGQISIALEYMDGGSLADVLRLKKCIPEPVLSSMFQKLLQGLSYLHGVRHLVHRDIKPANLLVNLKGEAKITDFGISAGLENSMAMCATFVGTVTYMSPERIRNESYSYPADIWSLGLALFECGTGEFPYSATEGLVNLMLQILDDPSPSPSKHKFSPEFCSFVDACLQKYADARPTAEQLLSHPFIKKYEDEQVDLAAFVQNVFDPVQRMKDLADMLTIHYYLLFDGSDEFWHHTKALYHESSSLSFSGKQFSGPSDIFAKLSEVRSTLAGDWPLEKLVHVVEKLQCRAHGRDGVAIRVSGSFILGNQFLICGDGVQVEGLPNFKDLSIDIENKCHCCLILFVQALVNLQQNDQLIYGYVHRFQSITDLTTREFSNKELAKLLSSDRSG | 584 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 29314766 | 29323179 | - | CrPI670011_10g015350.1 | Cre10g1535 | 510837 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre10g1535 | 584 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 245 | 257 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cre10g1535 | 584 | ProSiteProfiles | Protein kinase domain profile. | 125 | 381 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cre10g1535 | 584 | Gene3D | - | 405 | 508 | - | - | |
Cre10g1535 | 584 | FunFam | Mitogen-activated protein kinase kinase 3 | 405 | 547 | - | - | |
Cre10g1535 | 584 | ProSitePatterns | Protein kinases ATP-binding region signature. | 131 | 154 | IPR017441 | GO:0005524(InterPro) | |
Cre10g1535 | 584 | ProSiteProfiles | Nuclear transport factor 2 domain profile. | 408 | 558 | IPR018222 | - | |
Cre10g1535 | 584 | Pfam | Protein kinase domain | 129 | 381 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cre10g1535 | 584 | SUPERFAMILY | Protein kinase-like (PK-like) | 127 | 417 | IPR011009 | - | |
Cre10g1535 | 584 | FunFam | mitogen-activated protein kinase kinase 3 | 98 | 206 | - | - | |
Cre10g1535 | 584 | PANTHER | DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED | 102 | 414 | - | GO:0000165(PANTHER)|GO:0004708(PANTHER) | |
Cre10g1535 | 584 | SUPERFAMILY | NTF2-like | 406 | 503 | IPR032710 | - | |
Cre10g1535 | 584 | SMART | serkin_6 | 125 | 381 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cre10g1535 | 584 | Gene3D | Phosphorylase Kinase; domain 1 | 119 | 200 | - | - | |
Cre10g1535 | 584 | CDD | PKc_MAPKK_plant_like | 126 | 385 | - | - | |
Cre10g1535 | 584 | Gene3D | Transferase(Phosphotransferase) domain 1 | 201 | 404 | - | - | |
Cre10g1535 | 584 | FunFam | mitogen-activated protein kinase kinase 3 | 207 | 403 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre10g1535 | Cre-Chr10:29314766 | Cre11g0661 | Cre-Chr11:3692369 | 2.50E-56 | dispersed | |
Cre10g1535 | Cre-Chr10:29314766 | Cre11g0697 | Cre-Chr11:4058159 | 1.30E-65 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
64477 | PF00069 | Pkinase | 1.80E-58 | CL0016 | Cre | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre10g1535 | K20607 | - | csv:101217978 | 940.258 |