Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g1535 ATGAGAATCCACGCCCCGTCACCGTTAAGAAACGAAGATCATACTTACGACGTCGTTTTGCGCGATTTTTGGGATTTTGGGAATTTTGAAGAGGTTTTTCGATTGTTGTGTAGAAATTGCTCGAAAATGGCGGGTCTTGAGGAACTTAAGAAGAAACTTACTCCATTGTTTGATGCTGAAAAGGGGCTTTCTATGGACTCCCCTGTGGACCCTTCTGATTCTTATACGTTTTCAGACAATGGGACTGTTAATTTGCTGAGCCGATCATATGGGGTTTACAATTTTAATGAGCTAGGGTTACAAAAATGCACGTCTTGGCTTGCTGATGATTCAGGGAGTAGTGAGAGAACATATCGATGTGCTTCCCGTGAAATGAGGATATTTGGAGCCATTGGTAGTGGTGCTAGCAGTGTTGTTCAAAGAGCTATCCACATTCCTGCTCATCGAATCATGGCACTAAAGAAGATTAATATCTTCGAAAAGGAGAAAAGACAGCAGCTTCTTACCGAGATAAGGACACTATGCGAAGCGCCCTGTTCTGAGGGTCTTGTGGAGTTTCATGGAGCATTTTATACCCCTGATTCTGGGCAAATAAGCATCGCTTTGGAGTACATGGATGGAGGGTCATTGGCAGATGTCCTGCGTCTGAAAAAATGTATACCCGAGCCTGTCCTTTCATCTATGTTTCAGAAACTTCTTCAAGGTCTAAGTTACCTGCATGGAGTAAGACATTTGGTTCACAGAGATATAAAGCCAGCTAATTTACTAGTAAATCTGAAGGGTGAAGCAAAGATTACGGATTTTGGCATAAGTGCCGGCTTAGAGAATTCAATGGCAATGTGTGCTACTTTCGTTGGAACTGTCACATACATGTCGCCAGAGCGAATTCGAAACGAGAGCTATTCTTATCCAGCTGACATTTGGAGCCTTGGGCTTGCACTCTTTGAGTGTGGTACTGGTGAATTTCCATATTCAGCTACTGAAGGTCTAGTGAACCTCATGTTGCAGATTTTGGATGACCCGTCTCCATCACCATCAAAACATAAGTTTTCGCCGGAGTTTTGCTCTTTTGTCGATGCTTGCTTGCAGAAATATGCAGATGCTAGGCCAACAGCAGAGCAACTGCTTTCACACCCATTTATTAAAAAATATGAGGATGAACAAGTAGACTTGGCAGCATTTGTCCAGAATGTGTTTGATCCAGTACAGAGGATGAAGGACTTGGCAGATATGTTGACAATCCATTATTACTTGCTTTTTGATGGATCTGATGAATTCTGGCACCATACAAAAGCTCTGTACCATGAAAGCTCAAGTTTAAGTTTTTCAGGGAAGCAATTTTCTGGTCCAAGTGATATCTTTGCCAAACTATCAGAAGTTCGAAGTACATTAGCAGGAGACTGGCCTCTTGAAAAACTAGTTCACGTTGTCGAAAAACTCCAATGTCGTGCTCACGGTCGGGATGGAGTTGCCATAAGGGTGTCGGGATCCTTCATCCTTGGGAACCAGTTCCTCATATGTGGAGATGGTGTACAAGTAGAGGGACTGCCAAATTTTAAGGATCTCTCCATTGACATCGAGAACAAATGCCACTGCTGTTTGATCCTGTTTGTGCAAGCTTTAGTGAATCTGCAACAAAATGATCAACTTATCTATGGCTATGTCCACAGATTTCAATCTATCACTGACTTGACCACAAGAGAGTTTAGTAACAAGGAGCTTGCAAAGTTGTTGTCGAGTGATCGAAGTGGATGA 1755 42.62 MRIHAPSPLRNEDHTYDVVLRDFWDFGNFEEVFRLLCRNCSKMAGLEELKKKLTPLFDAEKGLSMDSPVDPSDSYTFSDNGTVNLLSRSYGVYNFNELGLQKCTSWLADDSGSSERTYRCASREMRIFGAIGSGASSVVQRAIHIPAHRIMALKKINIFEKEKRQQLLTEIRTLCEAPCSEGLVEFHGAFYTPDSGQISIALEYMDGGSLADVLRLKKCIPEPVLSSMFQKLLQGLSYLHGVRHLVHRDIKPANLLVNLKGEAKITDFGISAGLENSMAMCATFVGTVTYMSPERIRNESYSYPADIWSLGLALFECGTGEFPYSATEGLVNLMLQILDDPSPSPSKHKFSPEFCSFVDACLQKYADARPTAEQLLSHPFIKKYEDEQVDLAAFVQNVFDPVQRMKDLADMLTIHYYLLFDGSDEFWHHTKALYHESSSLSFSGKQFSGPSDIFAKLSEVRSTLAGDWPLEKLVHVVEKLQCRAHGRDGVAIRVSGSFILGNQFLICGDGVQVEGLPNFKDLSIDIENKCHCCLILFVQALVNLQQNDQLIYGYVHRFQSITDLTTREFSNKELAKLLSSDRSG 584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 29314766 29323179 - CrPI670011_10g015350.1 Cre10g1535 510837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g1535 584 ProSitePatterns Serine/Threonine protein kinases active-site signature. 245 257 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre10g1535 584 ProSiteProfiles Protein kinase domain profile. 125 381 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre10g1535 584 Gene3D - 405 508 - -
Cre10g1535 584 FunFam Mitogen-activated protein kinase kinase 3 405 547 - -
Cre10g1535 584 ProSitePatterns Protein kinases ATP-binding region signature. 131 154 IPR017441 GO:0005524(InterPro)
Cre10g1535 584 ProSiteProfiles Nuclear transport factor 2 domain profile. 408 558 IPR018222 -
Cre10g1535 584 Pfam Protein kinase domain 129 381 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre10g1535 584 SUPERFAMILY Protein kinase-like (PK-like) 127 417 IPR011009 -
Cre10g1535 584 FunFam mitogen-activated protein kinase kinase 3 98 206 - -
Cre10g1535 584 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 102 414 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Cre10g1535 584 SUPERFAMILY NTF2-like 406 503 IPR032710 -
Cre10g1535 584 SMART serkin_6 125 381 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre10g1535 584 Gene3D Phosphorylase Kinase; domain 1 119 200 - -
Cre10g1535 584 CDD PKc_MAPKK_plant_like 126 385 - -
Cre10g1535 584 Gene3D Transferase(Phosphotransferase) domain 1 201 404 - -
Cre10g1535 584 FunFam mitogen-activated protein kinase kinase 3 207 403 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre10g1535 Cre-Chr10:29314766 Cre11g0661 Cre-Chr11:3692369 2.50E-56 dispersed
Cre10g1535 Cre-Chr10:29314766 Cre11g0697 Cre-Chr11:4058159 1.30E-65 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64477 PF00069 Pkinase 1.80E-58 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g1535 K20607 - csv:101217978 940.258