Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g1535 ATGAGAATCCACGCCCCGTCACCGTTAAGAAACGAAGATCATACTTACGACGTCGTTTTGCGCGATTTTTGGGATTTTGGGAATTTTGAAGAGGTTTTTCGATTGTTGTGTAGAAATTGCTCGAAAATGGCGGGTCTTGAGGAACTTAAGAAGAAACTTACTCCATTGTTTGATGCTGAAAAGGGGCTTTCTATGGACTCCCCTGTGGACCCTTCTGATTCTTATACGTTTTCAGACAATGGGACTGTTAATTTGCTGAGCCGATCATATGGGGTTTACAATTTTAATGAGCTAGGGTTACAAAAATGCACGTCTTGGCTTGCTGATGATTCAGGGAGTAGTGAGAGAACATATCGATGTGCTTCCCGTGAAATGAGGATATTTGGAGCCATTGGTAGTGGTGCTAGCAGTGTTGTTCAAAGAGCTATCCACATTCCTGCTCATCGAATCATGGCACTAAAGAAGATTAATATCTTCGAAAAGGAGAAAAGACAGCAGCTTCTTACCGAGATAAGGACACTATGCGAAGCGCCCTGTTCTGAGGGTCTTGTGGAGTTTCATGGAGCATTTTATACCCCTGATTCTGGGCAAATAAGCATCGCTTTGGAGTACATGGATGGAGGGTCATTGGCAGATGTCCTGCGTCTGAAAAAATGTATACCCGAGCCTGTCCTTTCATCTATGTTTCAGAAACTTCTTCAAGGTCTAAGTTACCTGCATGGAGTAAGACATTTGGTTCACAGAGATATAAAGCCAGCTAATTTACTAGTAAATCTGAAGGGTGAAGCAAAGATTACGGATTTTGGCATAAGTGCCGGCTTAGAGAATTCAATGGCAATGTGTGCTACTTTCGTTGGAACTGTCACATACATGTCGCCAGAGCGAATTCGAAACGAGAGCTATTCTTATCCAGCTGACATTTGGAGCCTTGGGCTTGCACTCTTTGAGTGTGGTACTGGTGAATTTCCATATTCAGCTACTGAAGGTCTAGTGAACCTCATGTTGCAGATTTTGGATGACCCGTCTCCATCACCATCAAAACATAAGTTTTCGCCGGAGTTTTGCTCTTTTGTCGATGCTTGCTTGCAGAAATATGCAGATGCTAGGCCAACAGCAGAGCAACTGCTTTCACACCCATTTATTAAAAAATATGAGGATGAACAAGTAGACTTGGCAGCATTTGTCCAGAATGTGTTTGATCCAGTACAGAGGATGAAGGACTTGGCAGATATGTTGACAATCCATTATTACTTGCTTTTTGATGGATCTGATGAATTCTGGCACCATACAAAAGCTCTGTACCATGAAAGCTCAAGTTTAAGTTTTTCAGGGAAGCAATTTTCTGGTCCAAGTGATATCTTTGCCAAACTATCAGAAGTTCGAAGTACATTAGCAGGAGACTGGCCTCTTGAAAAACTAGTTCACGTTGTCGAAAAACTCCAATGTCGTGCTCACGGTCGGGATGGAGTTGCCATAAGGGTGTCGGGATCCTTCATCCTTGGGAACCAGTTCCTCATATGTGGAGATGGTGTACAAGTAGAGGGACTGCCAAATTTTAAGGATCTCTCCATTGACATCGAGAACAAATGCCACTGCTGTTTGATCCTGTTTGTGCAAGCTTTAGTGAATCTGCAACAAAATGATCAACTTATCTATGGCTATGTCCACAGATTTCAATCTATCACTGACTTGACCACAAGAGAGTTTAGTAACAAGGAGCTTGCAAAGTTGTTGTCGAGTGATCGAAGTGGATGA 1755 42.62 MRIHAPSPLRNEDHTYDVVLRDFWDFGNFEEVFRLLCRNCSKMAGLEELKKKLTPLFDAEKGLSMDSPVDPSDSYTFSDNGTVNLLSRSYGVYNFNELGLQKCTSWLADDSGSSERTYRCASREMRIFGAIGSGASSVVQRAIHIPAHRIMALKKINIFEKEKRQQLLTEIRTLCEAPCSEGLVEFHGAFYTPDSGQISIALEYMDGGSLADVLRLKKCIPEPVLSSMFQKLLQGLSYLHGVRHLVHRDIKPANLLVNLKGEAKITDFGISAGLENSMAMCATFVGTVTYMSPERIRNESYSYPADIWSLGLALFECGTGEFPYSATEGLVNLMLQILDDPSPSPSKHKFSPEFCSFVDACLQKYADARPTAEQLLSHPFIKKYEDEQVDLAAFVQNVFDPVQRMKDLADMLTIHYYLLFDGSDEFWHHTKALYHESSSLSFSGKQFSGPSDIFAKLSEVRSTLAGDWPLEKLVHVVEKLQCRAHGRDGVAIRVSGSFILGNQFLICGDGVQVEGLPNFKDLSIDIENKCHCCLILFVQALVNLQQNDQLIYGYVHRFQSITDLTTREFSNKELAKLLSSDRSG 584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 29314766 29323179 - CrPI670011_10g015350.1 Cre10g1535 510837

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g1535 584 ProSitePatterns Serine/Threonine protein kinases active-site signature. 245 257 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre10g1535 584 ProSiteProfiles Protein kinase domain profile. 125 381 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre10g1535 584 Gene3D - 405 508 - -
Cre10g1535 584 FunFam Mitogen-activated protein kinase kinase 3 405 547 - -
Cre10g1535 584 ProSitePatterns Protein kinases ATP-binding region signature. 131 154 IPR017441 GO:0005524(InterPro)
Cre10g1535 584 ProSiteProfiles Nuclear transport factor 2 domain profile. 408 558 IPR018222 -
Cre10g1535 584 Pfam Protein kinase domain 129 381 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre10g1535 584 SUPERFAMILY Protein kinase-like (PK-like) 127 417 IPR011009 -
Cre10g1535 584 FunFam mitogen-activated protein kinase kinase 3 98 206 - -
Cre10g1535 584 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 102 414 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Cre10g1535 584 SUPERFAMILY NTF2-like 406 503 IPR032710 -
Cre10g1535 584 SMART serkin_6 125 381 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre10g1535 584 Gene3D Phosphorylase Kinase; domain 1 119 200 - -
Cre10g1535 584 CDD PKc_MAPKK_plant_like 126 385 - -
Cre10g1535 584 Gene3D Transferase(Phosphotransferase) domain 1 201 404 - -
Cre10g1535 584 FunFam mitogen-activated protein kinase kinase 3 207 403 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g1535 K20607 - - csv:101217978 940.258
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre10g1535 Cre-Chr10:29314766 Cre11g0661 Cre-Chr11:3692369 2.50E-56 dispersed
Cre10g1535 Cre-Chr10:29314766 Cre11g0697 Cre-Chr11:4058159 1.30E-65 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g1310 . . . Bda13g01619 . Bpe14g00247 . . Cmo14g00685 . . Cma14g00668 . Car14g00608 . Cpe03g00581 . . . . . . . . Cla10g01325 Cam10g1289 Cec10g1402 Cco10g1377 Clacu10g1380 Cmu10g2151 Cre10g1535 . . . . . . Chy04g01430 Cme04g01845 Blo17g00301 . . . . . . . . . . . . . . . . Bhi11g01602 . . . Hepe02g1784 . . . . . . . . . . Csa03g03971 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre03g1805 . 28 333 MAP Kinase Kinase Gene Family AT4G26070 71.6 1.1e-128 456.8
Cre11g0661 . 27 330 MAP Kinase Kinase Gene Family AT4G26070 66.9 1.0e-118 423.7
Cre11g0697 . 26 349 MAP Kinase Kinase Gene Family AT4G26070 56.3 1.2e-108 390.2
Cre03g1805 . 1 326 MAP Kinase Kinase Gene Family AT4G29810 69.6 2.5e-133 472.2
Cre11g0661 . 1 325 MAP Kinase Kinase Gene Family AT4G29810 63.4 3.2e-117 418.7
Cre11g0697 . 10 324 MAP Kinase Kinase Gene Family AT4G29810 59.7 4.5e-111 398.3
Cre10g1535 . 78 529 MAP Kinase Kinase Gene Family AT5G40440 80.3 6.5e-215 743.8
Cre07g1779 . 1 367 MAP Kinase Kinase Gene Family AT1G51660 68.6 1.4e-134 476.5
Cre07g1779 . 1 367 MAP Kinase Kinase Gene Family AT3G21220 63.9 1.4e-128 456.4
Cre01g1381 . 41 311 MAP Kinase Kinase Gene Family AT3G21220 54.6 2.2e-84 309.7
Cre11g0697 . 1 349 MAP Kinase Kinase Gene Family AT5G56580 84.0 2.2e-169 592.0
Cre03g1805 . 7 332 MAP Kinase Kinase Gene Family AT5G56580 61.5 8.4e-116 414.1
Cre11g0661 . 1 330 MAP Kinase Kinase Gene Family AT5G56580 56.0 5.6e-104 374.8
Cre01g1381 . 1 313 MAP Kinase Kinase Gene Family AT1G18350 63.6 5.0e-109 391.3
Cre01g1381 . 1 297 MAP Kinase Kinase Gene Family AT3G06230 52.6 6.5e-82 301.2
Cre01g1381 . 1 309 MAP Kinase Kinase Gene Family AT1G73500 67.4 6.2e-115 411.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009007 1 3 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64477 PF00069 Pkinase 1.80E-58 CL0016 Cre PK