Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g1536 ATGTTGAAACAACAGCTTACAGAAAGGAGAAAAAATTATTGGAAGATGTCTTCTTCCACCTACTCCAATTCTCCCTGTGCAGCCTGCAAGTTCCTACGTCGAAAATGCCTACCGGATTGTGTTTTCGCACCGTATTTCCCGCCCGAAGAGCCCCAAAAGTTCGCCAATGTCCACAAGATCTTCGGCGCCAGCAATGTTAGTAAACTGCTGAACGAAGTCCAGCCGCATCAGCGGGAGGACGCTGTGAACTCGCTCGCCTACGAGGCCGAGGCGAGGATGAAAGACCCTGTCTATGGCTGCGTTGGTGCCATCTCTATACTCCAAAGGCAAGTCATCAAGCTTCAAAAAGAGCTTGACGCTACCAACGCCGACCTCATTCGCTATGCCTGCAGCGAAATCCCCACTCCATCTCCGTCCTCGTCATCGCAATACGCTCGAAGGTCGTCGTCAACGAGCCACGAAGGAAGCTCATCTACCTCTAGCTATGGTCATTACTATTCTGGTCTCTACTTTTCTCCATGGAGTAACAACAATAACGGCCCTTGTGGAGATGGCCATGACAAAGGAGAATACAAGTAA 579 50.09 MLKQQLTERRKNYWKMSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNADLIRYACSEIPTPSPSSSSQYARRSSSTSHEGSSSTSSYGHYYSGLYFSPWSNNNNGPCGDGHDKGEYK 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 29334984 29337268 + CrPI670011_10g015360.1 Cre10g1536 510838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g1536 192 MobiDBLite consensus disorder prediction 172 192 - -
Cre10g1536 192 Coils Coil 104 124 - -
Cre10g1536 192 ProSiteProfiles LOB domain profile. 24 125 IPR004883 -
Cre10g1536 192 Pfam Lateral organ boundaries (LOB) domain 25 122 IPR004883 -
Cre10g1536 192 MobiDBLite consensus disorder prediction 134 160 - -
Cre10g1536 192 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 23 142 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre10g1536 Cre-Chr10:29334984 Cre11g1551 Cre-Chr11:24820525 1.40E-45 dispersed
Cre02g1647 Cre-Chr2:29395269 Cre10g1536 Cre-Chr10:29334984 3.30E-39 transposed
Cre11g1088 Cre-Chr11:8336297 Cre10g1536 Cre-Chr10:29334984 4.40E-38 transposed
Cre01g0532 Cre-Chr1:4618826 Cre10g1536 Cre-Chr10:29334984 7.30E-59 wgd
Cre01g1243 Cre-Chr1:25632238 Cre10g1536 Cre-Chr10:29334984 8.70E-49 wgd
Cre10g1536 Cre-Chr10:29334984 Cre06g2588 Cre-Chr6:33590516 4.00E-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54546 PF03195 LOB 3.00E-42 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g1536 - - - 0.0