Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre10g1554 | ATGATTTCTAAAAAAGAAAAAAGTAGGGTCTTAACGGAAAGGAGAATACGTGTGCAACGGAAGACTATGGCAATAACAGCCCCAGGACAGCTCAATGTTAACGAGTCCCCTTCGTGGGGATCTAGAAGTGTTGATTGCTTTGAAAAACTGGAGCAGATTGGTGAAGGCACTTATGGTCAAGTTTACATGGCCAGAGAATTAAAAACAGGTGAAATTGTTGCGCTGAAGAAAATACGAATGGATAATGAGAGGGAAGGGTTCCCCATTACTGCCATACGAGAAATAAAAATTCTAAAGAAGCTCCATCATGAAAATGTAATAAAGTTGAAAGAGATTGTGACATCTCCAGGTCCTGAGCAGGATGAACAAGGGAAGCCAGATGGTAACAAGTATAAAGGTGGCATCTACATGGTTTTTGAGTACATGGACCATGATTTGACAGGTCTTGCTGATCGTCCAGGGATGAGGTTTTCAGTTCCCCAAATTAAGTGCTACATGAGGCAGCTTCTCACAGGGCTTCACTATTGTCATGTAAATCAAGTACTGCACAGGGATATAAAAGGCTCAAATCTGCTTATTGACAATGATGGAAATCTGAAGCTTGCAGATTTTGGGCTTGCCCGATCGTTTTCTAATGATCACAATGCAAATCTAACAAATCGTGTCATCACCTTATGGTACAGACCGCCTGAATTGCTGCTTGGGTCAACAAAATACGGTCCAGCTGTAGACATGTGGTCTGTTGGTTGTATTTTTGCAGAGCTTCTACATGGGAAGCCAATATTCCCTGGCAAGGATGAGCCAGAGCAATTAAATAAGATCTTTGAGCTATGTGGTGCTCCGGATGAAGTCAACTGGCCTGGGGTATCAAAAATCCCTTGGTACAACAATTTCAAACCCACAAGGCCAATGAAGAGACGTCTTAGAGAAGTATTCAGGCATTTTGATCGTCATGCTTTAGAACTGTTGGAGAAGATGCTCACTCTTGATCCTTCTCAGAGGATAGCTGCCAAGGATGCCCTAGATGCGGAGTATTTTTGGACAGATCCATTACCTTGTGACCCTAAAAGTTTACCCAAGTATGAAGCATCACACGAGTTCCAGACAAAGAAGAAGCGTCAACAGCAACGACAACATGAAGAAACTGCAAAAAGACAGAAGTTGCAACATGCACAGCATGGGCGTCTTCCACCTATTCAGCAATCGGGGCAAGCTCATGCGCAGATGCGACCAGTAGCTAACCAGCCTATTCATGGGTCTCAACCACCAATTGCTGCAGGGCCTAGCCATCATTTTGGGGGGAAGCCTCGTGGACCCCCAGGTCCTGGTAGGTATCCCTCAGGTGGAAACCCTCCTTCTGGATACAACCACCCAAGTCGTGGTGGTCAAGGTGGGGGTGGTTACGGCAACACACAATATACTCAAGGACGAGGTGCACCCTACGGGTCTGGCAACATATCTGGTGCTGGTCCCCGAGGTGGGGCGGGAGGTGCTGGTTATGGTGTGGGAGCTTCAAGTTACCCACAGAATGGTCCATATGCTGGTAGTTCTGGTACTGGCCGTGGCTCCAATGTGATGGGCGGAAACCGAAACCAACAATATGGATGGCAACAGTGA | 1617 | 46.13 | MISKKEKSRVLTERRIRVQRKTMAITAPGQLNVNESPSWGSRSVDCFEKLEQIGEGTYGQVYMARELKTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHENVIKLKEIVTSPGPEQDEQGKPDGNKYKGGIYMVFEYMDHDLTGLADRPGMRFSVPQIKCYMRQLLTGLHYCHVNQVLHRDIKGSNLLIDNDGNLKLADFGLARSFSNDHNANLTNRVITLWYRPPELLLGSTKYGPAVDMWSVGCIFAELLHGKPIFPGKDEPEQLNKIFELCGAPDEVNWPGVSKIPWYNNFKPTRPMKRRLREVFRHFDRHALELLEKMLTLDPSQRIAAKDALDAEYFWTDPLPCDPKSLPKYEASHEFQTKKKRQQQRQHEETAKRQKLQHAQHGRLPPIQQSGQAHAQMRPVANQPIHGSQPPIAAGPSHHFGGKPRGPPGPGRYPSGGNPPSGYNHPSRGGQGGGGYGNTQYTQGRGAPYGSGNISGAGPRGGAGGAGYGVGASSYPQNGPYAGSSGTGRGSNVMGGNRNQQYGWQQ | 538 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 29524189 | 29531111 | - | CrPI670011_10g015540.1 | Cre10g1554 | 510856 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre10g1554 | 538 | MobiDBLite | consensus disorder prediction | 465 | 481 | - | - | |
Cre10g1554 | 538 | MobiDBLite | consensus disorder prediction | 357 | 538 | - | - | |
Cre10g1554 | 538 | Gene3D | Transferase(Phosphotransferase) domain 1 | 144 | 386 | - | - | |
Cre10g1554 | 538 | MobiDBLite | consensus disorder prediction | 509 | 538 | - | - | |
Cre10g1554 | 538 | MobiDBLite | consensus disorder prediction | 359 | 388 | - | - | |
Cre10g1554 | 538 | Pfam | Protein kinase domain | 47 | 346 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cre10g1554 | 538 | FunFam | Cyclin-dependent kinase C-2 | 34 | 143 | - | - | |
Cre10g1554 | 538 | ProSiteProfiles | Protein kinase domain profile. | 47 | 346 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cre10g1554 | 538 | SUPERFAMILY | Protein kinase-like (PK-like) | 41 | 354 | IPR011009 | - | |
Cre10g1554 | 538 | MobiDBLite | consensus disorder prediction | 395 | 409 | - | - | |
Cre10g1554 | 538 | FunFam | Cyclin-dependent kinase C-2 | 144 | 386 | - | - | |
Cre10g1554 | 538 | CDD | STKc_CDK9_like | 47 | 346 | - | - | |
Cre10g1554 | 538 | SMART | serkin_6 | 47 | 346 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cre10g1554 | 538 | PANTHER | CELL DIVISION PROTEIN KINASE | 47 | 346 | IPR050108 | GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER) | |
Cre10g1554 | 538 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 181 | 193 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cre10g1554 | 538 | Gene3D | Phosphorylase Kinase; domain 1 | 34 | 143 | - | - | |
Cre10g1554 | 538 | ProSitePatterns | Protein kinases ATP-binding region signature. | 53 | 76 | IPR017441 | GO:0005524(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre02g2717 | Cre-Chr2:40339758 | Cre10g1554 | Cre-Chr10:29524189 | 1.60E-265 | dispersed | |
Cre10g1554 | Cre-Chr10:29524189 | Cre11g0557 | Cre-Chr11:2596343 | 8.50E-96 | dispersed | |
Cre10g1549 | Cre-Chr10:29478548 | Cre10g1554 | Cre-Chr10:29524189 | 6.50E-32 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
64480 | PF00069 | Pkinase | 1.30E-74 | CL0016 | Cre | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre10g1554 | K08819 | - | csv:101215918 | 970.689 |