Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g1554 ATGATTTCTAAAAAAGAAAAAAGTAGGGTCTTAACGGAAAGGAGAATACGTGTGCAACGGAAGACTATGGCAATAACAGCCCCAGGACAGCTCAATGTTAACGAGTCCCCTTCGTGGGGATCTAGAAGTGTTGATTGCTTTGAAAAACTGGAGCAGATTGGTGAAGGCACTTATGGTCAAGTTTACATGGCCAGAGAATTAAAAACAGGTGAAATTGTTGCGCTGAAGAAAATACGAATGGATAATGAGAGGGAAGGGTTCCCCATTACTGCCATACGAGAAATAAAAATTCTAAAGAAGCTCCATCATGAAAATGTAATAAAGTTGAAAGAGATTGTGACATCTCCAGGTCCTGAGCAGGATGAACAAGGGAAGCCAGATGGTAACAAGTATAAAGGTGGCATCTACATGGTTTTTGAGTACATGGACCATGATTTGACAGGTCTTGCTGATCGTCCAGGGATGAGGTTTTCAGTTCCCCAAATTAAGTGCTACATGAGGCAGCTTCTCACAGGGCTTCACTATTGTCATGTAAATCAAGTACTGCACAGGGATATAAAAGGCTCAAATCTGCTTATTGACAATGATGGAAATCTGAAGCTTGCAGATTTTGGGCTTGCCCGATCGTTTTCTAATGATCACAATGCAAATCTAACAAATCGTGTCATCACCTTATGGTACAGACCGCCTGAATTGCTGCTTGGGTCAACAAAATACGGTCCAGCTGTAGACATGTGGTCTGTTGGTTGTATTTTTGCAGAGCTTCTACATGGGAAGCCAATATTCCCTGGCAAGGATGAGCCAGAGCAATTAAATAAGATCTTTGAGCTATGTGGTGCTCCGGATGAAGTCAACTGGCCTGGGGTATCAAAAATCCCTTGGTACAACAATTTCAAACCCACAAGGCCAATGAAGAGACGTCTTAGAGAAGTATTCAGGCATTTTGATCGTCATGCTTTAGAACTGTTGGAGAAGATGCTCACTCTTGATCCTTCTCAGAGGATAGCTGCCAAGGATGCCCTAGATGCGGAGTATTTTTGGACAGATCCATTACCTTGTGACCCTAAAAGTTTACCCAAGTATGAAGCATCACACGAGTTCCAGACAAAGAAGAAGCGTCAACAGCAACGACAACATGAAGAAACTGCAAAAAGACAGAAGTTGCAACATGCACAGCATGGGCGTCTTCCACCTATTCAGCAATCGGGGCAAGCTCATGCGCAGATGCGACCAGTAGCTAACCAGCCTATTCATGGGTCTCAACCACCAATTGCTGCAGGGCCTAGCCATCATTTTGGGGGGAAGCCTCGTGGACCCCCAGGTCCTGGTAGGTATCCCTCAGGTGGAAACCCTCCTTCTGGATACAACCACCCAAGTCGTGGTGGTCAAGGTGGGGGTGGTTACGGCAACACACAATATACTCAAGGACGAGGTGCACCCTACGGGTCTGGCAACATATCTGGTGCTGGTCCCCGAGGTGGGGCGGGAGGTGCTGGTTATGGTGTGGGAGCTTCAAGTTACCCACAGAATGGTCCATATGCTGGTAGTTCTGGTACTGGCCGTGGCTCCAATGTGATGGGCGGAAACCGAAACCAACAATATGGATGGCAACAGTGA 1617 46.13 MISKKEKSRVLTERRIRVQRKTMAITAPGQLNVNESPSWGSRSVDCFEKLEQIGEGTYGQVYMARELKTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHENVIKLKEIVTSPGPEQDEQGKPDGNKYKGGIYMVFEYMDHDLTGLADRPGMRFSVPQIKCYMRQLLTGLHYCHVNQVLHRDIKGSNLLIDNDGNLKLADFGLARSFSNDHNANLTNRVITLWYRPPELLLGSTKYGPAVDMWSVGCIFAELLHGKPIFPGKDEPEQLNKIFELCGAPDEVNWPGVSKIPWYNNFKPTRPMKRRLREVFRHFDRHALELLEKMLTLDPSQRIAAKDALDAEYFWTDPLPCDPKSLPKYEASHEFQTKKKRQQQRQHEETAKRQKLQHAQHGRLPPIQQSGQAHAQMRPVANQPIHGSQPPIAAGPSHHFGGKPRGPPGPGRYPSGGNPPSGYNHPSRGGQGGGGYGNTQYTQGRGAPYGSGNISGAGPRGGAGGAGYGVGASSYPQNGPYAGSSGTGRGSNVMGGNRNQQYGWQQ 538
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 29524189 29531111 - CrPI670011_10g015540.1 Cre10g1554 510856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g1554 538 MobiDBLite consensus disorder prediction 465 481 - -
Cre10g1554 538 MobiDBLite consensus disorder prediction 357 538 - -
Cre10g1554 538 Gene3D Transferase(Phosphotransferase) domain 1 144 386 - -
Cre10g1554 538 MobiDBLite consensus disorder prediction 509 538 - -
Cre10g1554 538 MobiDBLite consensus disorder prediction 359 388 - -
Cre10g1554 538 Pfam Protein kinase domain 47 346 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre10g1554 538 FunFam Cyclin-dependent kinase C-2 34 143 - -
Cre10g1554 538 ProSiteProfiles Protein kinase domain profile. 47 346 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre10g1554 538 SUPERFAMILY Protein kinase-like (PK-like) 41 354 IPR011009 -
Cre10g1554 538 MobiDBLite consensus disorder prediction 395 409 - -
Cre10g1554 538 FunFam Cyclin-dependent kinase C-2 144 386 - -
Cre10g1554 538 CDD STKc_CDK9_like 47 346 - -
Cre10g1554 538 SMART serkin_6 47 346 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre10g1554 538 PANTHER CELL DIVISION PROTEIN KINASE 47 346 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Cre10g1554 538 ProSitePatterns Serine/Threonine protein kinases active-site signature. 181 193 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre10g1554 538 Gene3D Phosphorylase Kinase; domain 1 34 143 - -
Cre10g1554 538 ProSitePatterns Protein kinases ATP-binding region signature. 53 76 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2717 Cre-Chr2:40339758 Cre10g1554 Cre-Chr10:29524189 1.60E-265 dispersed
Cre10g1554 Cre-Chr10:29524189 Cre11g0557 Cre-Chr11:2596343 8.50E-96 dispersed
Cre10g1549 Cre-Chr10:29478548 Cre10g1554 Cre-Chr10:29524189 6.50E-32 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64480 PF00069 Pkinase 1.30E-74 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g1554 K08819 - csv:101215918 970.689