Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g1562 ATGGCGGTTCTGCAGCTTCCTTGTGTGAGGATTACTGACTGTTCATCCTCGCCATTGTCGAGAGTAAGTAAATCGTCGTTGTTCTGGGGAAGCAATCTGTGCTTTGGAAATGGAAGTGTTAGGGATGGTCCGACAGTGAAAGCTTCATTCAATGGTCGAGTTGTTAAGGTTTTCGCCATGTCCGATAGTTCTTCTTCTTCTTCATCGTTTAAGATGAATCTCAATGAGTACATGGTTACTCTTGAGAAACCGCTCGGCATTCGGTTCGCGATTTCCGTCGATGGAAGAATCTTCGTTCACTCGCTTAAGAAAGGGGGTAATGCTGAGAAGTCAAGAATAATCATGGTGGGGGACACTTTGAAGAAGGCAAGCGATTCATCAGGCGTCAAGCTCACTGAGATTAAAGACTTTGGTGATACACAGATGATGCTGAAGGAGAAAGCAGGATCTTTTAGCCTGGTTCTTGAAAGACCCTTTTCACCTTTTCCTATTCAACAGCTTCTGCTTTCAAACGATTTAGATATTTTATTTAACAGAGGTCGGGTGCCTATTGCTACTTGGAAGAAGGAAGTTTTGGCATCAAACTTACAAACATCTGATGCAAGCAGTGGGAACTCTGGCTTTGCGACTTTCTCCTCTAAGTTCTCTACATCACAAGGTTGGAAACTTCTTAACGATCAAAATGGAAATGTAAAATCACATATGCAGAAAAACATTTTCACGCCTCAAATCAGCCAACTTGTTGGTATATTTACTGAAGAGGAGCCTGGAGATGGAGAATGGGCTCATGGGAGCTTCCCCCTTGATGAATATGTCAAGGCATTAGAACGGTCTAAAGGGGAGTTATATTACGATCACTCTCGTGGTATGAGCTATAGTAAGATCACGGAGCAAATATATGTGGGGTCATGTATACAGACTGAAGCAGACGTAGAAGCTTTAGCAAATGACGTGGGAGTTACCGCTGTACTGAATTTTCAAGGTGCAACTGAGGCAGAAAACTGGGGGATTAATTCCAAGATAATCAACGAGTCGTGCCAAAAATTTAACATTCTAATGATCAGCTATCCTATCAGGGCAGGAGATTCTTATGATTTGAGGAAAAAACTACCATTCTGTGTGGGTCTACTTCTCCGACTGTTAAAAAAGAACCATCGAGTTTTTATAACTTGTACTTCTGGTTTTGATCGATCTCCAGCAAGTGTTATTGCATATCTACACTGGATGACCGATACTTCTCTTCATGCAGCTTATAATTTTATCACCAGTTTGCATTCCAGCAAACCTGACAGGCCTGCAATCGCTTGGGCTACCTGGGATCTCATAGCAATGATGGAAAATGGAAGGCATGATGGACCTCCCACTCATGCCGTTACCTTCGTATGGAATGGACAAGAGGGGGAGGATGTAAATTTGGTTGGAGATTTTACTGGTAACTGGAAAGAACCGGTCAAGGCTAGTCACAAGGGTGGGCCTAGATATGAAGTAGAAATGAAACTTCCTCAGGGGAAGTATTATTATAAGTACATCACAAATGGTCAGTGGAGGCACTCAACATCTTCACCTGCTGAAAGAGACGATAGGGGGAATGTTAACAATGTAATAGTCATCGGCGACACTGCCAGTGTTAGGCCTTCAGTTCAACCGCAAAAGAAAGATGCAAATATCGTGAAGGTAATCGAAAGGCCATTGACAGAAAATGAGCGGTTTATGTTGGCGAAAGCGGCTCGTTGCGTTGCATTTTCAGTATGTCCAATTAGATTAACTCCCAAGTAG 1776 42.79 MAVLQLPCVRITDCSSSPLSRVSKSSLFWGSNLCFGNGSVRDGPTVKASFNGRVVKVFAMSDSSSSSSSFKMNLNEYMVTLEKPLGIRFAISVDGRIFVHSLKKGGNAEKSRIIMVGDTLKKASDSSGVKLTEIKDFGDTQMMLKEKAGSFSLVLERPFSPFPIQQLLLSNDLDILFNRGRVPIATWKKEVLASNLQTSDASSGNSGFATFSSKFSTSQGWKLLNDQNGNVKSHMQKNIFTPQISQLVGIFTEEEPGDGEWAHGSFPLDEYVKALERSKGELYYDHSRGMSYSKITEQIYVGSCIQTEADVEALANDVGVTAVLNFQGATEAENWGINSKIINESCQKFNILMISYPIRAGDSYDLRKKLPFCVGLLLRLLKKNHRVFITCTSGFDRSPASVIAYLHWMTDTSLHAAYNFITSLHSSKPDRPAIAWATWDLIAMMENGRHDGPPTHAVTFVWNGQEGEDVNLVGDFTGNWKEPVKASHKGGPRYEVEMKLPQGKYYYKYITNGQWRHSTSSPAERDDRGNVNNVIVIGDTASVRPSVQPQKKDANIVKVIERPLTENERFMLAKAARCVAFSVCPIRLTPK 591
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 29647022 29652414 + CrPI670011_10g015620.1 Cre10g1562 510864

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g1562 591 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 56 585 - GO:0005983(PANTHER)|GO:0009507(PANTHER)|GO:0043036(PANTHER)
Cre10g1562 591 Gene3D Protein tyrosine phosphatase superfamily 284 550 IPR029021 -
Cre10g1562 591 FunFam Phosphoglucan phosphatase LSF1, chloroplastic 445 541 - -
Cre10g1562 591 ProSiteProfiles PDZ domain profile. 78 159 IPR001478 GO:0005515(InterPro)
Cre10g1562 591 SUPERFAMILY E set domains 455 538 IPR014756 -
Cre10g1562 591 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 283 426 IPR029021 -
Cre10g1562 591 ProSiteProfiles Dual specificity protein phosphatase domain profile. 291 450 IPR020422 GO:0006470(InterPro)
Cre10g1562 591 Gene3D Immunoglobulins 445 541 IPR013783 -
Cre10g1562 591 CDD DSP_laforin-like 290 436 IPR045204 GO:0019203(InterPro)
Cre10g1562 591 SUPERFAMILY PDZ domain-like 61 163 IPR036034 GO:0005515(InterPro)
Cre10g1562 591 CDD E_set_AMPKbeta_like_N 458 537 - -
Cre10g1562 591 Pfam Glycogen recognition site of AMP-activated protein kinase 458 539 IPR032640 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g1562 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g1353 . . Bda01g01276 . . . . . . Cmo11g01690 Cma11g01431 . Car11g01375 . . . . . . . . . . . Cla10g01351 Cam10g1259 Cec10g1431 Cco10g1406 Clacu10g1409 Cmu10g2179 Cre10g1562 Cone11ag0116 Cone18ag1361 . . . . Chy04g01457 Cme04g01886 . Blo18g00335 . . . . Bma01g00978 . . . . . . . . . . Bhi11g01648 . . . Hepe02g1823 . . . . . . . . . . Csa03g03940 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre04g1330 . 117 690 Protein tyrosine phosphatase (PTP) family AT3G50110 62.3 2.2e-191 666.0
Cre02g0980 . 102 671 Protein tyrosine phosphatase (PTP) family AT3G50110 58.4 1.1e-179 627.1
Cre10g1677 . 1 390 Protein tyrosine phosphatase (PTP) family AT5G39400 67.0 3.1e-154 542.0
Cre08g0753 . 1 856 Protein tyrosine phosphatase (PTP) family AT3G10550 69.3 0.0e+00 1183.3
Cre08g0753 . 1 856 Protein tyrosine phosphatase (PTP) family AT5G04540 65.2 0.0e+00 1116.7
Cre06g2103 . 1 1258 Protein tyrosine phosphatase (PTP) family AT5G58160 55.9 0.0e+00 1090.9
Cre05g1800 . 1 1408 Protein tyrosine phosphatase (PTP) family AT5G58160 50.4 2.8e-299 1025.4
Cre09g0986 . 87 391 Protein tyrosine phosphatase (PTP) family AT1G71860 67.3 3.3e-122 435.3
Cre06g2686 . 125 1036 Protein tyrosine phosphatase (PTP) family AT5G23720 64.4 0.0e+00 1087.4
Cre06g1337 . 80 219 Protein tyrosine phosphatase (PTP) family AT3G06110 56.4 2.9e-42 168.7
Cre01g0393 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 77.5 2.4e-71 265.4
Cre05g2324 . 168 448 Protein tyrosine phosphatase (PTP) family AT3G52180 69.8 3.3e-115 411.8
Cre07g0876 . 10 256 Protein tyrosine phosphatase (PTP) family AT3G10940 68.7 6.9e-97 350.9
Cre10g1562 . 143 591 Protein tyrosine phosphatase (PTP) family AT3G01510 72.6 5.1e-203 704.1
Cre09g1063 . 25 233 Protein tyrosine phosphatase (PTP) family AT2G32960 63.9 2.2e-73 272.7
Cre03g1338 . 3 170 Protein tyrosine phosphatase (PTP) family AT2G32960 51.0 8.6e-54 207.6
Cre10g0493 . 71 403 Protein tyrosine phosphatase (PTP) family AT2G35680 55.8 3.2e-101 365.5
Cre11g0690 . 17 263 Protein tyrosine phosphatase (PTP) family AT2G35680 55.3 1.4e-80 297.0
Cre11g0690 . 27 218 Protein tyrosine phosphatase (PTP) family AT5G56610 50.5 1.4e-45 179.9
Cre10g0493 . 107 282 Protein tyrosine phosphatase (PTP) family AT5G56610 50.6 6.5e-43 171.0
Cre09g1063 . 34 233 Protein tyrosine phosphatase (PTP) family AT4G03960 64.0 6.6e-70 260.8
Cre03g1338 . 13 170 Protein tyrosine phosphatase (PTP) family AT4G03960 62.7 5.8e-58 221.1
Cre03g1338 . 7 196 Protein tyrosine phosphatase (PTP) family AT3G02800 70.5 4.0e-78 288.1
Cre07g0660 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 65.6 8.1e-63 239.2
Cre10g1677 . 1 390 Protein tyrosine phosphatase (PTP) family AT5G39400 67.0 3.1e-154 542.0
Cre02g0980 . 68 671 Protein tyrosine phosphatase (PTP) family AT3G19420 64.3 4.8e-220 761.1
Cre04g1330 . 117 690 Protein tyrosine phosphatase (PTP) family AT3G19420 61.0 9.4e-200 693.7
Cre04g1330 . 117 690 Protein tyrosine phosphatase (PTP) family AT3G50110 62.3 2.2e-191 666.0
Cre02g0980 . 102 671 Protein tyrosine phosphatase (PTP) family AT3G50110 58.4 1.1e-179 627.1
Cre06g2103 . 1 1258 Protein tyrosine phosphatase (PTP) family AT5G58160 55.9 0.0e+00 1090.9
Cre05g1800 . 1 1408 Protein tyrosine phosphatase (PTP) family AT5G58160 50.4 2.8e-299 1025.4
Cre08g0753 . 1 856 Protein tyrosine phosphatase (PTP) family AT3G10550 69.3 0.0e+00 1183.3
Cre08g0753 . 1 856 Protein tyrosine phosphatase (PTP) family AT5G04540 65.2 0.0e+00 1116.7
Cre02g2507 . 67 249 Protein tyrosine phosphatase (PTP) family AT3G44620 65.0 1.5e-69 260.0
Cre10g0432 . 22 310 Protein tyrosine phosphatase (PTP) family AT2G35320 61.2 1.5e-100 363.2
Cre04g0825 . 1 672 Protein tyrosine phosphatase (PTP) family AT3G09100 70.4 1.5e-286 982.2
Cre04g0825 . 5 672 Protein tyrosine phosphatase (PTP) family AT5G01290 65.6 2.1e-258 888.6
Cre04g0825 . 86 672 Protein tyrosine phosphatase (PTP) family AT5G28210 56.2 1.3e-183 640.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008517 1 3 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 35