Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g1562 ATGGCGGTTCTGCAGCTTCCTTGTGTGAGGATTACTGACTGTTCATCCTCGCCATTGTCGAGAGTAAGTAAATCGTCGTTGTTCTGGGGAAGCAATCTGTGCTTTGGAAATGGAAGTGTTAGGGATGGTCCGACAGTGAAAGCTTCATTCAATGGTCGAGTTGTTAAGGTTTTCGCCATGTCCGATAGTTCTTCTTCTTCTTCATCGTTTAAGATGAATCTCAATGAGTACATGGTTACTCTTGAGAAACCGCTCGGCATTCGGTTCGCGATTTCCGTCGATGGAAGAATCTTCGTTCACTCGCTTAAGAAAGGGGGTAATGCTGAGAAGTCAAGAATAATCATGGTGGGGGACACTTTGAAGAAGGCAAGCGATTCATCAGGCGTCAAGCTCACTGAGATTAAAGACTTTGGTGATACACAGATGATGCTGAAGGAGAAAGCAGGATCTTTTAGCCTGGTTCTTGAAAGACCCTTTTCACCTTTTCCTATTCAACAGCTTCTGCTTTCAAACGATTTAGATATTTTATTTAACAGAGGTCGGGTGCCTATTGCTACTTGGAAGAAGGAAGTTTTGGCATCAAACTTACAAACATCTGATGCAAGCAGTGGGAACTCTGGCTTTGCGACTTTCTCCTCTAAGTTCTCTACATCACAAGGTTGGAAACTTCTTAACGATCAAAATGGAAATGTAAAATCACATATGCAGAAAAACATTTTCACGCCTCAAATCAGCCAACTTGTTGGTATATTTACTGAAGAGGAGCCTGGAGATGGAGAATGGGCTCATGGGAGCTTCCCCCTTGATGAATATGTCAAGGCATTAGAACGGTCTAAAGGGGAGTTATATTACGATCACTCTCGTGGTATGAGCTATAGTAAGATCACGGAGCAAATATATGTGGGGTCATGTATACAGACTGAAGCAGACGTAGAAGCTTTAGCAAATGACGTGGGAGTTACCGCTGTACTGAATTTTCAAGGTGCAACTGAGGCAGAAAACTGGGGGATTAATTCCAAGATAATCAACGAGTCGTGCCAAAAATTTAACATTCTAATGATCAGCTATCCTATCAGGGCAGGAGATTCTTATGATTTGAGGAAAAAACTACCATTCTGTGTGGGTCTACTTCTCCGACTGTTAAAAAAGAACCATCGAGTTTTTATAACTTGTACTTCTGGTTTTGATCGATCTCCAGCAAGTGTTATTGCATATCTACACTGGATGACCGATACTTCTCTTCATGCAGCTTATAATTTTATCACCAGTTTGCATTCCAGCAAACCTGACAGGCCTGCAATCGCTTGGGCTACCTGGGATCTCATAGCAATGATGGAAAATGGAAGGCATGATGGACCTCCCACTCATGCCGTTACCTTCGTATGGAATGGACAAGAGGGGGAGGATGTAAATTTGGTTGGAGATTTTACTGGTAACTGGAAAGAACCGGTCAAGGCTAGTCACAAGGGTGGGCCTAGATATGAAGTAGAAATGAAACTTCCTCAGGGGAAGTATTATTATAAGTACATCACAAATGGTCAGTGGAGGCACTCAACATCTTCACCTGCTGAAAGAGACGATAGGGGGAATGTTAACAATGTAATAGTCATCGGCGACACTGCCAGTGTTAGGCCTTCAGTTCAACCGCAAAAGAAAGATGCAAATATCGTGAAGGTAATCGAAAGGCCATTGACAGAAAATGAGCGGTTTATGTTGGCGAAAGCGGCTCGTTGCGTTGCATTTTCAGTATGTCCAATTAGATTAACTCCCAAGTAG 1776 42.79 MAVLQLPCVRITDCSSSPLSRVSKSSLFWGSNLCFGNGSVRDGPTVKASFNGRVVKVFAMSDSSSSSSSFKMNLNEYMVTLEKPLGIRFAISVDGRIFVHSLKKGGNAEKSRIIMVGDTLKKASDSSGVKLTEIKDFGDTQMMLKEKAGSFSLVLERPFSPFPIQQLLLSNDLDILFNRGRVPIATWKKEVLASNLQTSDASSGNSGFATFSSKFSTSQGWKLLNDQNGNVKSHMQKNIFTPQISQLVGIFTEEEPGDGEWAHGSFPLDEYVKALERSKGELYYDHSRGMSYSKITEQIYVGSCIQTEADVEALANDVGVTAVLNFQGATEAENWGINSKIINESCQKFNILMISYPIRAGDSYDLRKKLPFCVGLLLRLLKKNHRVFITCTSGFDRSPASVIAYLHWMTDTSLHAAYNFITSLHSSKPDRPAIAWATWDLIAMMENGRHDGPPTHAVTFVWNGQEGEDVNLVGDFTGNWKEPVKASHKGGPRYEVEMKLPQGKYYYKYITNGQWRHSTSSPAERDDRGNVNNVIVIGDTASVRPSVQPQKKDANIVKVIERPLTENERFMLAKAARCVAFSVCPIRLTPK 591
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 29647022 29652414 + CrPI670011_10g015620.1 Cre10g1562 510864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g1562 591 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 56 585 - GO:0005983(PANTHER)|GO:0009507(PANTHER)|GO:0043036(PANTHER)
Cre10g1562 591 Gene3D Protein tyrosine phosphatase superfamily 284 550 IPR029021 -
Cre10g1562 591 FunFam Phosphoglucan phosphatase LSF1, chloroplastic 445 541 - -
Cre10g1562 591 ProSiteProfiles PDZ domain profile. 78 159 IPR001478 GO:0005515(InterPro)
Cre10g1562 591 SUPERFAMILY E set domains 455 538 IPR014756 -
Cre10g1562 591 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 283 426 IPR029021 -
Cre10g1562 591 ProSiteProfiles Dual specificity protein phosphatase domain profile. 291 450 IPR020422 GO:0006470(InterPro)
Cre10g1562 591 Gene3D Immunoglobulins 445 541 IPR013783 -
Cre10g1562 591 CDD DSP_laforin-like 290 436 IPR045204 GO:0019203(InterPro)
Cre10g1562 591 SUPERFAMILY PDZ domain-like 61 163 IPR036034 GO:0005515(InterPro)
Cre10g1562 591 CDD E_set_AMPKbeta_like_N 458 537 - -
Cre10g1562 591 Pfam Glycogen recognition site of AMP-activated protein kinase 458 539 IPR032640 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g1562 - - - 0.0