Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g1576 ATGGAATCTGGTCGGTTCTTGTTTAATCCGCCGCCTTGCGGTGGCAACATGCTTTATCTTGGCGGAGCCGGTGCCGATCCTTGTCTGCGAGGAGGAAGAACAATGATGAGTATGTCCATGAATGAGAGTTCAAAAGGGAGGCCATTTTTCAGATCACCTAACGATCTTTACGACGATGAATATTACGACGAGTTCTACCCTGAGAAGAAGCGTCGTCTCACCCACGACCAGGTTCAAATGCTGGAGAAGAATTTTGAGGAAGAGAACAAACTGGAGCCTGAGAGGAAGTCCCAACTGGCCAAGAAGCTAGGGCTGCAACCGAGGCAGGTCGCTGTGTGGTTCCAAAATCGTCGTGCTCGATGGAAGACGAAGCAGCTCGAAAGGGACTATGATGTTCTTAAAGCTTCATATGATTCGCTTCTGTCTAACTATGACTCAATACTCAAGGAGAATGCAGTTCTTAAATCTGAGGTGGCTTCCTTAACTGAGAAATGTCAAGCTCAAGGGCTGAATGGAGGAGAAGCACCAATTCCATGTGTAACATCAGAGCTTCTTCTAGCAGAAATTGCCCATGTCTCCGCCCCGCACTCCGGCAGAAAGGCTGAGGATCGTCTGAGTTCAGGGAGTGATAGCAGTGCAGTGATCGATGATAATTGTCCACAACTCATCGACAGCGGTGATTCTTACTTCCCTAGCAGCGAGTATCCACAATTGCCAAACGGGTTGCAAATCGAACACGATGATACAAATGACAATAGCAATTACTTGTTCTCAGATATGTTTGCAGCAGCAAACCAACAGAATCAAGAGGGAGGGCCTCCATCTTGGTGGACATGGACTTAG 843 47.69 MESGRFLFNPPPCGGNMLYLGGAGADPCLRGGRTMMSMSMNESSKGRPFFRSPNDLYDDEYYDEFYPEKKRRLTHDQVQMLEKNFEEENKLEPERKSQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKASYDSLLSNYDSILKENAVLKSEVASLTEKCQAQGLNGGEAPIPCVTSELLLAEIAHVSAPHSGRKAEDRLSSGSDSSAVIDDNCPQLIDSGDSYFPSSEYPQLPNGLQIEHDDTNDNSNYLFSDMFAAANQQNQEGGPPSWWTWT 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 29786220 29790525 + CrPI670011_10g015760.1 Cre10g1576 510878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g1576 280 ProSiteProfiles 'Homeobox' domain profile. 64 124 IPR001356 GO:0003677(InterPro)
Cre10g1576 280 ProSitePatterns 'Homeobox' domain signature. 99 122 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cre10g1576 280 Gene3D - 67 130 - -
Cre10g1576 280 SMART HOX_1 67 128 IPR001356 GO:0003677(InterPro)
Cre10g1576 280 FunFam Homeobox-leucine zipper protein HAT5 62 126 - -
Cre10g1576 280 SUPERFAMILY Homeodomain-like 63 126 IPR009057 -
Cre10g1576 280 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 44 245 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
Cre10g1576 280 Pfam Homeodomain 69 122 IPR001356 GO:0003677(InterPro)
Cre10g1576 280 CDD homeodomain 69 125 IPR001356 GO:0003677(InterPro)
Cre10g1576 280 PRINTS Lambda-repressor HTH signature 95 104 IPR000047 GO:0003677(InterPro)
Cre10g1576 280 PRINTS Lambda-repressor HTH signature 104 120 IPR000047 GO:0003677(InterPro)
Cre10g1576 280 Pfam Homeobox associated leucine zipper 124 165 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cre10g1576 280 Coils Coil 144 164 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1323 Cre-Chr1:26449073 Cre10g1576 Cre-Chr10:29786220 3.50E-31 dispersed
Cre05g2632 Cre-Chr5:37379511 Cre10g1576 Cre-Chr10:29786220 2.90E-22 dispersed
Cre10g1576 Cre-Chr10:29786220 Cre11g1853 Cre-Chr11:30166727 3.50E-24 dispersed
Cre01g0567 Cre-Chr1:4975021 Cre10g1576 Cre-Chr10:29786220 2.00E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54548 PF00046 Homeodomain 4.40E-18 CL0123 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g1576 K09338 - csv:101212142 479.559