Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g1579 ATGTTCTTGGCTATTACACATCCACCTGGCCCCTCCCCCATTTCACTTGCACCAACCCCAATTATATCTCCATTCCCTCCTAAACTTCTCATTTCTTTCTTCTTCTTCCTCTCTCCATCAACCTTCAATCTCTCTGTCTCTCTCACACACACACATTTCTCGCCGGGGAACACGACAAAACCCCGGAATCCGCCATGGAAGATGGATAGAATCATCCAGTCGCCGGCGTCCAAGTTCCGCCCCTTTCGGCGACAGCTAATCGGCTCGTCCTCCGATTCGGCCACCGGCGCGGCGGCGGCCACGGACGAACACCCAAATTACATCCTCCTCCGCTACCAAATCCTCGATCCTGATAGCGACATCGTAGCGCAATGGAACCGGGTGTTTCTAGTGACATGCCTGATCGCTCTGTTCATCGATCCCCTGTATTTCTACACGTCGTCTGTGGGAGGGCCGGCGTGCCTGACCTCAGAGGTGAATCTGGGAGTGGTGATCACATTCTTCAGAACGGTGACGGATCTGTTCTTCTTGCTGCACATGGTGCTGAAGTTTCGAACCGCGTATGTGGCTCCAAGCTCTAGGGTTTTTGGAAGGGGAGAGCTGGTTATGGATGCCAAAGCCATTGCTACGCGCTATTTGAAATCTGATTTTGTGATTGATCTTGCCGCTACTCTCCCCCTCCCACAAATAGTGATGTGGTTGGTGATTCCAGCAACAAGAAACTCAAGGGTAGATCATGCCAACAACACAATTGCTCTCCTTGTTTTGCTCCAATACGTTCCAAGGCTGTTCCTCATCTTCCCTCTCAACCAACGCATCATCAAAACCACTGGTGTTGTTGCCAAAACTGCTTGGGCTGGTGCTGCCTACAATCTCATCCTCTACATGCTTGCTAGTCATGTTTTGGGATCTACATGGTATTTGCTGTCCATAGGGAGACAGTTCTCATGTTGGAAATCAGAGTGTGCAAAGGAAAATGCCTCCAAAGTTCTAACATGCCTACCCTTCTTCTTGGATTGTAACAGTTTGAATGACACTGAAAGACAATATTGGCTCAATGTCACTCAGGTTACTTCCAAATGTGATCCTAGGAATGAGAACATAAAGTTCAAGTTTGGAATGTTCTCAGATGCTTTCACCAATGATGTTGCCTCCTCCCATTTCTTTGCAAAGTACTTTTATTGTCTTTGGTGGGGCCTCAGGAATTTAAGTTCATACGGTCAAACTTTGGATACAACAACTTATATTGGCGAGACATTATTTTGCATATCAACTTGCATATTTGGGTTGATATTATTTTCACAACTCATTGGCAACATGCAGACATATTTGCAATCAATGACAGTAAGACTTGAAGAATGGAGGATAAAGAGAAGGGACACTGAAGAATGGATGAGACGTCGTCAATTACCACCAGATTTGCAGGAACGAGTTCGCCGATTCGTCCAATATAAATGGCTGGCCACAAGAGGAGTTAATGAAGAATCTATATTGCGTTCGTTGCCTATAGACCTTCGCCGTGAGATTCAACAACATTTGTGTTTGTCCCTTGTTCGTCGTGTGCCTTTCTTCTCACAAATGGATGATCAACTTCTTGATGCCATATGTGAGCGTTTAGTCTCATCCTTGTGTACTCAAGGAACATATATTGTGCGAGAGGATGACCCAGTTAACGAAATGTTGTTTATTATAAGAGGACAACTAGAGAGCTCGACGACGAATGGCGGTCGATCTGGCTTTTTCAACTCCATTACACTAAAACCAGGAGATTTTTGTGGTGAAGAACTATTGACATGGGCTTTGATGCCAAGTTCTAGTTTGAATATGCCTTCTTCTACTCGAACCGTCCGTGCGCTTACCGAAGTTGAAGCTTTTGCTCTTCGAGCTGAGGATCTCAAGTTCGTTGCTGGACAATTTAAACGCCTGCATAGCAAGAAACTACAACATGCCTTTAGGTATTATTCCCATCAATGGAGGACCTGGGGTGCTTGTTTAATTCAAGTAGCTTGGAGGAGGCTTCAGAAGAGAAAATTGGCAAAGAGATCAGCAGCATTCAGAGACAGTTTAAGTTACTATGCAGATTCAGTGCAACAAGATATCGAATACGATATCGAGCTAGCAGATGAAAATTATGACGACGACAGCGACGATGACGAGGACGACGACATGTCTTCTGCAGACTACATGAACAAAACTCAACATCTAGGGGCCACAATTTTGGCTTCAAAGTTTGCTGCCAACACTAGAAGAGGAGTTAATCAAAAGGCTCAAACATCCAAACCTTCAAGTTTGAAAATGCCAAAGTTGTTTAAACCAGATGAACCTGATTTTTCTATGGATGGATGA 2346 44.97 MFLAITHPPGPSPISLAPTPIISPFPPKLLISFFFFLSPSTFNLSVSLTHTHFSPGNTTKPRNPPWKMDRIIQSPASKFRPFRRQLIGSSSDSATGAAAATDEHPNYILLRYQILDPDSDIVAQWNRVFLVTCLIALFIDPLYFYTSSVGGPACLTSEVNLGVVITFFRTVTDLFFLLHMVLKFRTAYVAPSSRVFGRGELVMDAKAIATRYLKSDFVIDLAATLPLPQIVMWLVIPATRNSRVDHANNTIALLVLLQYVPRLFLIFPLNQRIIKTTGVVAKTAWAGAAYNLILYMLASHVLGSTWYLLSIGRQFSCWKSECAKENASKVLTCLPFFLDCNSLNDTERQYWLNVTQVTSKCDPRNENIKFKFGMFSDAFTNDVASSHFFAKYFYCLWWGLRNLSSYGQTLDTTTYIGETLFCISTCIFGLILFSQLIGNMQTYLQSMTVRLEEWRIKRRDTEEWMRRRQLPPDLQERVRRFVQYKWLATRGVNEESILRSLPIDLRREIQQHLCLSLVRRVPFFSQMDDQLLDAICERLVSSLCTQGTYIVREDDPVNEMLFIIRGQLESSTTNGGRSGFFNSITLKPGDFCGEELLTWALMPSSSLNMPSSTRTVRALTEVEAFALRAEDLKFVAGQFKRLHSKKLQHAFRYYSHQWRTWGACLIQVAWRRLQKRKLAKRSAAFRDSLSYYADSVQQDIEYDIELADENYDDDSDDDEDDDMSSADYMNKTQHLGATILASKFAANTRRGVNQKAQTSKPSSLKMPKLFKPDEPDFSMDG 781
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 29826647 29830564 - CrPI670011_10g015790.1 Cre10g1579 510881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g1579 781 MobiDBLite consensus disorder prediction 749 764 - -
Cre10g1579 781 MobiDBLite consensus disorder prediction 749 781 - -
Cre10g1579 781 MobiDBLite consensus disorder prediction 767 781 - -
Cre10g1579 781 SUPERFAMILY cAMP-binding domain-like 453 648 IPR018490 -
Cre10g1579 781 CDD CAP_ED 523 654 IPR000595 -
Cre10g1579 781 FunFam Cyclic nucleotide-gated ion channel 1 450 514 - -
Cre10g1579 781 SMART cnmp_10 523 654 IPR000595 -
Cre10g1579 781 SUPERFAMILY Voltage-gated potassium channels 116 445 - -
Cre10g1579 781 FunFam Cyclic nucleotide-gated ion channel 1 521 639 - -
Cre10g1579 781 Gene3D Helix hairpin bin 450 514 - -
Cre10g1579 781 Pfam Ion transport protein 125 450 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre10g1579 781 Gene3D - 128 448 - -
Cre10g1579 781 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 109 759 - -
Cre10g1579 781 ProSiteProfiles cAMP/cGMP binding motif profile. 523 653 IPR000595 -
Cre10g1579 781 Pfam Cyclic nucleotide-binding domain 546 633 IPR000595 -
Cre10g1579 781 Gene3D Jelly Rolls 521 641 IPR014710 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre10g1579 Cre-Chr10:29826647 Cre10g1605 Cre-Chr10:30159402 8.30E-185 dispersed
Cre02g2431 Cre-Chr2:37689519 Cre10g1579 Cre-Chr10:29826647 9.40E-204 transposed
Cre04g0995 Cre-Chr4:28540023 Cre10g1579 Cre-Chr10:29826647 7.10E-174 transposed
Cre05g2807 Cre-Chr5:38797007 Cre10g1579 Cre-Chr10:29826647 5.10E-245 transposed
Cre06g2161 Cre-Chr6:29450966 Cre10g1579 Cre-Chr10:29826647 2.40E-242 transposed
Cre07g2040 Cre-Chr7:36021952 Cre10g1579 Cre-Chr10:29826647 1.00E-100 transposed
Cre10g0839 Cre-Chr10:9147254 Cre10g1579 Cre-Chr10:29826647 1.20E-96 transposed
Cre10g1579 Cre-Chr10:29826647 Cre06g2557 Cre-Chr6:33183457 6.90E-264 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g1579 K05391 - csv:101216651 1381.7