Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g1605 ATGGCGGCCTCTGCTCGAGCTTTCTTCCTGTCTCGTGTCACTGACTTTTCAATTAAGCCCCGCCTACCTCCCCAACCACCGCCGCCGCCCCCGCCCTTGCCTTCTTTTTCCTATTCACATCTCAGCCTTCAACGGCGGCGCTTTCCCCCCACGTCTGGTGCAACCACTGTCAGCTGCCTTATCTCCGGTGTTGATGGTGGTGGAGTTTCCGATGACTTTGTTTCTACCCGGAAGTTGAAATTCGATCGCGGATTCTCCGTAATCGCCAATATGCTTAAGCGGATTGAGCCGCTTGATACATCCGATATCTCCAAGGGCGTTTCTGATGTTGCTAAGGATTCCATGAAGCAGACTATTTCTTCAATGTTGGGTTTGCTTCCGTCGGATCAGTTCGCTGTCACCGTTAGGGTTTCCAAAAGCCCTCTCCATAACCTCCTCTCTTCGTCAATTATCACCGGGTACACTCTGTGGAACGCGGAGTATCGGTTGTCTTTGATGAGGAATTTCGATATCTCGCCGGATAATTTGATGGGCTTGGACAGGTCGAAACCACTTGAAGTATCGGATGTTGAGGAGATTCGGGTTGACGTTGATTCCAATATGGAAGATTTGGATACAAGGCCTCGTCTCTTGACCGATTTGCCACCCGAGGCGTTGAAGTACATCCAGCAGTTGCAGTCAGAATTATCAAATCTTAAGGATGAACTTAATGCTCGGAAGCAAGAAAATATGCAGATAGAACATGGCAGAGGAAACAGAAACGATTTGTTAGAGTATCTGCGGTCCTTGGATTCTAATATGGTCACTGAACTCTGCAAACCATCTACGTCGGAGGTGGAGGAAATCATTCACGAGCTTGTTGGAAACATATTGCAAAGGTTCTTCAAAGATGATGCTAGCTCTACTTTCGTTGAGGATTCGAGTGTGGCGGATTTAGAGAAACTTGCAGATGCTGGCAATGAGTTTTGTGACACTGTAGGCACTTCTCGGGATTACCTAGCAAAGCTTTTATTCTGGTGTATGTTATTGGGGCATCACTTGAGAAGCTTGGAGAATAGACTGCAGTTAAGCTGTGTCGATTTGCATCATCCGGCTATTAAGTCCCAGCACAATGGACTTGGTAAGGGTTCCACGAAGGATTCTTTGGAAATCATTAAATTTACTTTCATGTCGCAGTACATAGGCGGTCACAAGGAGAAATTCGCGAGGTTGGATGATTTGGATTCAAATTTGTCAATGCCCTCTGGAACAAGCAAAATGAAGAAATGTCGATTCAACCTAGAAGGCCTCCCACTGCCATTCATTAGCCGATCGAAGCCACAAAATGCGTCCAAATCGTTCCGAAGAGGAGTCCAAAGGAGCTCCGACGGAATCAAAACCCTAGGTCGGTCGCTCCGCTCCGGCGTGTCCAAAGTCATCTTCCCGGAGGATTTGAAAGTATCGGAACAGAAAATCTTCGATCCGCAAGACAAATCGCTCCTCTTCTGGAATAAGCTTTTCGTGCTGTGCTGTATCCTCGCCGTCTCTGTCGATCCACTCTTCTTCTACCTCCCTGTGTTCAACCATGCCTCTTACTGCCTCGGAATGGACACTCAGCTCGCCGTCACGACCACCACCGTGCGTACGGCCATCGATGTTTTCTACTTGATTCGCATGGCGTTTCAGTTCCGGACGGCTTACATTGCGCCATCGTCAAGAGTATTTGGTCGCGGCGAGCTTGTGATCGATCCGACGGAAATCGCCCAGCGGTATCTTCAGCGCTACTTTGTAGCCGATTTTCTCTCTGTTCTTCCTCTTCCTCAGGTGGTGGTGTGGAGGTTTCTTCACAGGTCAAAAGGCTCGGAAGTTTTAGCCACAAAACAAGCATTGTTAAACATAGTGTTTCTTCAGTATATTCCCAGATTTATTAGATTTATTCCTTTGAACATAGAGCTTAAGAAGACAGCAGGTGTTTTTGCTGAAAGTGCTTGGGCTGGTGCTGCTTACTATCTCCTCTTGTACATGCTTGCCAGCCATATAGCGGGAGCATTCTGGTACTTGCTGGCAGTGGAGAGGAACGATGCATGTTGGCGCCAAGCATGCAGAAGCAGCGGAAAGTGCAACATTAACTATTTGTATTGTGGGAATAAGCACATGTCCGGTTATAAGGATTGGAGAAATATTAGCGTTGAAGTTCTCACTAAGAAATGCACCGCCGTGGGAGACAATTTGCCTTTCAACTATGGCATTTACACTCAGGCCATTTCCTCAGGCATTGTTCAGTCCAGGACTTTCTTCTCCAAGTTCTGCTATTGCTTGTGGTGGGGCTTGCAAAATTTAAGTACACTTGGTCAGGGGCTGCTCACCAGTACCTATCCTGGGGAGGTTATCTTTTCTATCTTAATTGCAATTTCTGGGCTCCTCCTTTTTGCACTCTTGATTGGAAACATGCAAACGTACCTTCAATCTCTAACCGTCCGACTTGAAGAGATGCGCATCAAGAGGAGAGACTCTGAACAATGGATGCACCATCGACTTCTTCCGCCAGACTTGAGAGAAAAAGTTAGGCGCTACGATCAGTACAAATGGCTAGAAACCAGAGGCGTTGATGAAGAGAGCTTGGTTCAAAGTTTGCCTAAAGATCTTAGGAGAGACATTAAACGACATCTCTGTCTCAATTTGGTTAGAAGGGTCCCTCTATTTGCGAACATGGATGAGCGTCTTCTAGACGCAATATGCGAGAGGCTGAAGCCAACATTATACACAGAGAACACATACATAGTACGAGAGGGCGACCCAGTCGACGAAATGCTTTTCATAATCCGTGGCCGCCTAGAGAGCGTCACGACCGACGGCGGCCGGAGCGGCTTCTACAACCGCGGCGTATTAAAAGAAGGCGATTTCTGTGGCGAAGAGCTTTTAACGTGGGCCCTCGACCCGAAGTCCGGCTCCAACCTCCCCTCCTCCACTCGCACTGTCCATGCCCTTACCGAGGTTGAAGCCTTCGCCTTAGAGGCTGAGGAGCTCAAGTTCGTGGCCAGCCAGTTCCGGCGCCTGCATAGCCGGCAGGTTCAACACACCTTCAGATTCTACTCTCAGCAGTGGCGAACCTGGGCATCGTGTTTTATACAGGCGGCGTGGCGGCGGTATTTGAAGCGGAAGATTGCGGAGCTGCGACGGAAGGAGGAGGAAGAAGAGGATGCGGCGGCGGCTGCGGCTGCGTATGGCACGTCGAGGCTTGGGGCTACAATTTTGGCGTCGAGATTTGCGGCGAATGCGCTTAGAGGGCATCGATTGAGAAATGTGAGTGGGAAGAGCTTGATTAACTTGCAGAAGCCGGCGGAGCCTGATTTTTCTGTGTATAAAGGAGAGTAA 3354 48.78 MAASARAFFLSRVTDFSIKPRLPPQPPPPPPPLPSFSYSHLSLQRRRFPPTSGATTVSCLISGVDGGGVSDDFVSTRKLKFDRGFSVIANMLKRIEPLDTSDISKGVSDVAKDSMKQTISSMLGLLPSDQFAVTVRVSKSPLHNLLSSSIITGYTLWNAEYRLSLMRNFDISPDNLMGLDRSKPLEVSDVEEIRVDVDSNMEDLDTRPRLLTDLPPEALKYIQQLQSELSNLKDELNARKQENMQIEHGRGNRNDLLEYLRSLDSNMVTELCKPSTSEVEEIIHELVGNILQRFFKDDASSTFVEDSSVADLEKLADAGNEFCDTVGTSRDYLAKLLFWCMLLGHHLRSLENRLQLSCVDLHHPAIKSQHNGLGKGSTKDSLEIIKFTFMSQYIGGHKEKFARLDDLDSNLSMPSGTSKMKKCRFNLEGLPLPFISRSKPQNASKSFRRGVQRSSDGIKTLGRSLRSGVSKVIFPEDLKVSEQKIFDPQDKSLLFWNKLFVLCCILAVSVDPLFFYLPVFNHASYCLGMDTQLAVTTTTVRTAIDVFYLIRMAFQFRTAYIAPSSRVFGRGELVIDPTEIAQRYLQRYFVADFLSVLPLPQVVVWRFLHRSKGSEVLATKQALLNIVFLQYIPRFIRFIPLNIELKKTAGVFAESAWAGAAYYLLLYMLASHIAGAFWYLLAVERNDACWRQACRSSGKCNINYLYCGNKHMSGYKDWRNISVEVLTKKCTAVGDNLPFNYGIYTQAISSGIVQSRTFFSKFCYCLWWGLQNLSTLGQGLLTSTYPGEVIFSILIAISGLLLFALLIGNMQTYLQSLTVRLEEMRIKRRDSEQWMHHRLLPPDLREKVRRYDQYKWLETRGVDEESLVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPTLYTENTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFYNRGVLKEGDFCGEELLTWALDPKSGSNLPSSTRTVHALTEVEAFALEAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWASCFIQAAWRRYLKRKIAELRRKEEEEEDAAAAAAAYGTSRLGATILASRFAANALRGHRLRNVSGKSLINLQKPAEPDFSVYKGE 1117
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 30159402 30171939 + CrPI670011_10g016050.1 Cre10g1605 510907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g1605 1117 MobiDBLite consensus disorder prediction 19 38 - -
Cre10g1605 1117 Pfam Ion transport protein 495 820 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre10g1605 1117 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 468 1094 - -
Cre10g1605 1117 Coils Coil 1041 1064 - -
Cre10g1605 1117 CDD CAP_ED 893 1024 IPR000595 -
Cre10g1605 1117 Coils Coil 222 242 - -
Cre10g1605 1117 Gene3D Helix hairpin bin 821 884 - -
Cre10g1605 1117 ProSiteProfiles cAMP/cGMP binding motif profile. 893 1023 IPR000595 -
Cre10g1605 1117 Pfam Cyclic nucleotide-binding domain 914 1004 IPR000595 -
Cre10g1605 1117 SUPERFAMILY cAMP-binding domain-like 823 1013 IPR018490 -
Cre10g1605 1117 Pfam Protein of unknown function (DUF760) 90 168 IPR008479 -
Cre10g1605 1117 Pfam Protein of unknown function (DUF760) 255 358 IPR008479 -
Cre10g1605 1117 Gene3D Jelly Rolls 891 1011 IPR014710 -
Cre10g1605 1117 SUPERFAMILY Voltage-gated potassium channels 488 815 - -
Cre10g1605 1117 ProSiteProfiles IQ motif profile. 1029 1058 - -
Cre10g1605 1117 FunFam Cyclic nucleotide-gated ion channel 1 820 884 - -
Cre10g1605 1117 Gene3D - 498 818 - -
Cre10g1605 1117 MobiDBLite consensus disorder prediction 20 36 - -
Cre10g1605 1117 FunFam Cyclic nucleotide-gated ion channel 1 891 1009 - -
Cre10g1605 1117 SMART cnmp_10 893 1024 IPR000595 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0163 Cre-Chr5:1658782 Cre10g1605 Cre-Chr10:30159402 5.30E-162 dispersed
Cre05g1065 Cre-Chr5:9894485 Cre10g1605 Cre-Chr10:30159402 1.30E-103 dispersed
Cre06g2557 Cre-Chr6:33183457 Cre10g1605 Cre-Chr10:30159402 1.30E-181 dispersed
Cre09g2458 Cre-Chr9:43895116 Cre10g1605 Cre-Chr10:30159402 1.60E-206 dispersed
Cre10g1579 Cre-Chr10:29826647 Cre10g1605 Cre-Chr10:30159402 8.30E-185 dispersed
Cre02g1014 Cre-Chr2:7763024 Cre10g1605 Cre-Chr10:30159402 9.60E-41 transposed
Cre02g1767 Cre-Chr2:30984171 Cre10g1605 Cre-Chr10:30159402 4.30E-300 transposed
Cre11g0950 Cre-Chr11:6809920 Cre10g1605 Cre-Chr10:30159402 7.20E-103 transposed
Cre01g1597 Cre-Chr1:29018709 Cre10g1605 Cre-Chr10:30159402 8.90E-111 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g1605 K05391 - csv:101221166 1346.64