Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre10g1623 | ATGATGAAGGTTGTGTTGGTGTTGGTTTCAATGGCTGTTCTTATGCCAACTATAAGAGCTAGCATTGCTGAATATGATGATTTTTTACTCCAAAAGGCTGAAGAAGCCAAACAAGCTTCTCTTGAAGCCTTCCATCCTGATCCCATGAATGTCACTGACCATTTCAACCAACAAGTTCATTTAGCTTTGGAGGGAATAGAAGGAAGCAATAGTACTAGGAGGAGTCTGGCGAAATATAACGGGCCGTGTTTGGCGACGAACCCGATTGACCGTTGTTGGCGTTGTGACCCAAATTGGGCCAAGAACCGTAAGAAACTTGCCACTTGCGTTCTCGGTTTTGGCCGAAAAACCACCGGTGGCAAAAGAGGACGTATCTACGTTGTGTCCGACCCTTCAGATAACGACGTTGTTAACCCTAAACCTGGAACCCTCCGATATGCCGCTATTCAAAAACGGCCACTATGGATTATTTTTGGGCGTAGTATGATCATCAGGCTGACTAAGGAATTGATGGTGACTAGCCACAAGACCATTGATGCTCGCGGTGCCAATGTTCACATTGCCTATGGTGCTGGTCTTAGCATTCAATTCTCTCGAAATGTGATCATCCACGGCCTACACATCCACCACGTCATTTCAGCCACCGGTGGCTTGATCCGAGACGGCGCTAACCATGTTGGCCTCCGAACGGTCAGTGACGGAGACGGTATCTCCATCTTTGGATCATCCAACATCTGGCTCGATCATCTCTCCATGTCTAACTGCCAAGATGGACTCATCGACGCAATCCAAGGCTCCACCGGAATCACCATCTCAAACTCTCATTTCACTCATCACAACGACGTGATGTTATTCGGGGCAAGTGATTCGTATCAAGGTGACTCGATCATGCAAGTGACCGTCGCATTCAACCATTTCGGGAAGGGATTGGTGCAGAGAATGCCAAGATGCAGATGGGGTTTCTTCCATGTGGTCAACAACGATTACACTCATTGGCTCATGTACGCCATTGGTGGCAGTCAACATCCCACCATTATCAGTCAAGGAAACCGTTTCATCGCCCCACCCAACCCTGCTGCAAGACAGATTACCAATAGAAACTATGCACCAGAGAGTGTATGGAGAACATGGACATGGAGATCGGAAGGGGATCTGATGATGAATGGAGCCTATTTCATTCAGTCCGGGAATCCAAGCAAACGAAGGCCATACAGCAGGTTCGACATGATAAAGGCTAAGCCTGGCACCTTTGTTAGAAGGCTTACTCGCTTCTCTGGCTCACTCAACTGTTATGTTGGTCGCCCATGCTAA | 1311 | 47.83 | MMKVVLVLVSMAVLMPTIRASIAEYDDFLLQKAEEAKQASLEAFHPDPMNVTDHFNQQVHLALEGIEGSNSTRRSLAKYNGPCLATNPIDRCWRCDPNWAKNRKKLATCVLGFGRKTTGGKRGRIYVVSDPSDNDVVNPKPGTLRYAAIQKRPLWIIFGRSMIIRLTKELMVTSHKTIDARGANVHIAYGAGLSIQFSRNVIIHGLHIHHVISATGGLIRDGANHVGLRTVSDGDGISIFGSSNIWLDHLSMSNCQDGLIDAIQGSTGITISNSHFTHHNDVMLFGASDSYQGDSIMQVTVAFNHFGKGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSQHPTIISQGNRFIAPPNPAARQITNRNYAPESVWRTWTWRSEGDLMMNGAYFIQSGNPSKRRPYSRFDMIKAKPGTFVRRLTRFSGSLNCYVGRPC | 436 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 30316806 | 30318419 | + | CrPI670011_10g016230.1 | Cre10g1623 | 510925 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre10g1623 | 436 | Pfam | Pectate lyase, N terminus | 22 | 76 | IPR007524 | GO:0030570(InterPro) | |
Cre10g1623 | 436 | Gene3D | - | 86 | 429 | IPR012334 | - | |
Cre10g1623 | 436 | Pfam | Pectate lyase | 171 | 352 | IPR002022 | - | |
Cre10g1623 | 436 | PANTHER | PECTATE LYASE 18-RELATED | 15 | 433 | IPR045032 | GO:0030570(InterPro) | |
Cre10g1623 | 436 | SMART | amb_all | 161 | 358 | IPR002022 | - | |
Cre10g1623 | 436 | SUPERFAMILY | Pectin lyase-like | 87 | 426 | IPR011050 | - | |
Cre10g1623 | 436 | PRINTS | Pollen allergen Amb family signature | 109 | 126 | IPR018082 | - | |
Cre10g1623 | 436 | PRINTS | Pollen allergen Amb family signature | 133 | 158 | IPR018082 | - | |
Cre10g1623 | 436 | PRINTS | Pollen allergen Amb family signature | 335 | 354 | IPR018082 | - | |
Cre10g1623 | 436 | PRINTS | Pollen allergen Amb family signature | 407 | 430 | IPR018082 | - | |
Cre10g1623 | 436 | PRINTS | Pollen allergen Amb family signature | 169 | 185 | IPR018082 | - | |
Cre10g1623 | 436 | PRINTS | Pollen allergen Amb family signature | 233 | 254 | IPR018082 | - | |
Cre10g1623 | 436 | PRINTS | Pollen allergen Amb family signature | 313 | 332 | IPR018082 | - | |
Cre10g1623 | 436 | PRINTS | Pollen allergen Amb family signature | 377 | 401 | IPR018082 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre08g0841 | Cre-Chr8:21488235 | Cre10g1623 | Cre-Chr10:30316806 | 1.30E-184 | dispersed | |
Cre08g1690 | Cre-Chr8:29305832 | Cre10g1623 | Cre-Chr10:30316806 | 7.20E-129 | dispersed | |
Cre01g1327 | Cre-Chr1:26471749 | Cre10g1623 | Cre-Chr10:30316806 | 1.00E-179 | wgd | |
Cre01g1583 | Cre-Chr1:28921540 | Cre10g1623 | Cre-Chr10:30316806 | 2.60E-70 | wgd | |
Cre10g1623 | Cre-Chr10:30316806 | Cre05g2625 | Cre-Chr5:37313946 | 4.30E-191 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre10g1623 | K01728 | - | csv:101202789 | 824.698 |