Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g1623 ATGATGAAGGTTGTGTTGGTGTTGGTTTCAATGGCTGTTCTTATGCCAACTATAAGAGCTAGCATTGCTGAATATGATGATTTTTTACTCCAAAAGGCTGAAGAAGCCAAACAAGCTTCTCTTGAAGCCTTCCATCCTGATCCCATGAATGTCACTGACCATTTCAACCAACAAGTTCATTTAGCTTTGGAGGGAATAGAAGGAAGCAATAGTACTAGGAGGAGTCTGGCGAAATATAACGGGCCGTGTTTGGCGACGAACCCGATTGACCGTTGTTGGCGTTGTGACCCAAATTGGGCCAAGAACCGTAAGAAACTTGCCACTTGCGTTCTCGGTTTTGGCCGAAAAACCACCGGTGGCAAAAGAGGACGTATCTACGTTGTGTCCGACCCTTCAGATAACGACGTTGTTAACCCTAAACCTGGAACCCTCCGATATGCCGCTATTCAAAAACGGCCACTATGGATTATTTTTGGGCGTAGTATGATCATCAGGCTGACTAAGGAATTGATGGTGACTAGCCACAAGACCATTGATGCTCGCGGTGCCAATGTTCACATTGCCTATGGTGCTGGTCTTAGCATTCAATTCTCTCGAAATGTGATCATCCACGGCCTACACATCCACCACGTCATTTCAGCCACCGGTGGCTTGATCCGAGACGGCGCTAACCATGTTGGCCTCCGAACGGTCAGTGACGGAGACGGTATCTCCATCTTTGGATCATCCAACATCTGGCTCGATCATCTCTCCATGTCTAACTGCCAAGATGGACTCATCGACGCAATCCAAGGCTCCACCGGAATCACCATCTCAAACTCTCATTTCACTCATCACAACGACGTGATGTTATTCGGGGCAAGTGATTCGTATCAAGGTGACTCGATCATGCAAGTGACCGTCGCATTCAACCATTTCGGGAAGGGATTGGTGCAGAGAATGCCAAGATGCAGATGGGGTTTCTTCCATGTGGTCAACAACGATTACACTCATTGGCTCATGTACGCCATTGGTGGCAGTCAACATCCCACCATTATCAGTCAAGGAAACCGTTTCATCGCCCCACCCAACCCTGCTGCAAGACAGATTACCAATAGAAACTATGCACCAGAGAGTGTATGGAGAACATGGACATGGAGATCGGAAGGGGATCTGATGATGAATGGAGCCTATTTCATTCAGTCCGGGAATCCAAGCAAACGAAGGCCATACAGCAGGTTCGACATGATAAAGGCTAAGCCTGGCACCTTTGTTAGAAGGCTTACTCGCTTCTCTGGCTCACTCAACTGTTATGTTGGTCGCCCATGCTAA 1311 47.83 MMKVVLVLVSMAVLMPTIRASIAEYDDFLLQKAEEAKQASLEAFHPDPMNVTDHFNQQVHLALEGIEGSNSTRRSLAKYNGPCLATNPIDRCWRCDPNWAKNRKKLATCVLGFGRKTTGGKRGRIYVVSDPSDNDVVNPKPGTLRYAAIQKRPLWIIFGRSMIIRLTKELMVTSHKTIDARGANVHIAYGAGLSIQFSRNVIIHGLHIHHVISATGGLIRDGANHVGLRTVSDGDGISIFGSSNIWLDHLSMSNCQDGLIDAIQGSTGITISNSHFTHHNDVMLFGASDSYQGDSIMQVTVAFNHFGKGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSQHPTIISQGNRFIAPPNPAARQITNRNYAPESVWRTWTWRSEGDLMMNGAYFIQSGNPSKRRPYSRFDMIKAKPGTFVRRLTRFSGSLNCYVGRPC 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 30316806 30318419 + CrPI670011_10g016230.1 Cre10g1623 510925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g1623 436 Pfam Pectate lyase, N terminus 22 76 IPR007524 GO:0030570(InterPro)
Cre10g1623 436 Gene3D - 86 429 IPR012334 -
Cre10g1623 436 Pfam Pectate lyase 171 352 IPR002022 -
Cre10g1623 436 PANTHER PECTATE LYASE 18-RELATED 15 433 IPR045032 GO:0030570(InterPro)
Cre10g1623 436 SMART amb_all 161 358 IPR002022 -
Cre10g1623 436 SUPERFAMILY Pectin lyase-like 87 426 IPR011050 -
Cre10g1623 436 PRINTS Pollen allergen Amb family signature 109 126 IPR018082 -
Cre10g1623 436 PRINTS Pollen allergen Amb family signature 133 158 IPR018082 -
Cre10g1623 436 PRINTS Pollen allergen Amb family signature 335 354 IPR018082 -
Cre10g1623 436 PRINTS Pollen allergen Amb family signature 407 430 IPR018082 -
Cre10g1623 436 PRINTS Pollen allergen Amb family signature 169 185 IPR018082 -
Cre10g1623 436 PRINTS Pollen allergen Amb family signature 233 254 IPR018082 -
Cre10g1623 436 PRINTS Pollen allergen Amb family signature 313 332 IPR018082 -
Cre10g1623 436 PRINTS Pollen allergen Amb family signature 377 401 IPR018082 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g0841 Cre-Chr8:21488235 Cre10g1623 Cre-Chr10:30316806 1.30E-184 dispersed
Cre08g1690 Cre-Chr8:29305832 Cre10g1623 Cre-Chr10:30316806 7.20E-129 dispersed
Cre01g1327 Cre-Chr1:26471749 Cre10g1623 Cre-Chr10:30316806 1.00E-179 wgd
Cre01g1583 Cre-Chr1:28921540 Cre10g1623 Cre-Chr10:30316806 2.60E-70 wgd
Cre10g1623 Cre-Chr10:30316806 Cre05g2625 Cre-Chr5:37313946 4.30E-191 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g1623 K01728 - csv:101202789 824.698