Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre10g1625 | ATGGAGGCGGCGGCTTTGGTACTGAAGAACGAGGAGAATCTGAGAATATGTTGGACAGAAGGTCAAACTCAGGCCATAAGACGTGTCAAGAGACGGCGGAGAGACTCAGCCACCGCCGATCAAACTAATAAGCAGCAGTGTCTAAAGCAACAATCCGATCAAGCTCCGACCACCACTATGAAGCGGAGTTCAAGATTTCGTGGCGTTAGCAGACATAGATGGACGGGTCGATTTGAAGCTCATTTATGGGATAAACTTTCTTGGAATATGACACAAAAGAAGAAGGGCAAACAAGGAGCTTATGACGAAGAAGAATCAGCTGCAAGAGCATATGATTTAGCAGCACTCAAGTATTGGGGTGTAACAACCATCACTAACTTCCCTATATCAGAGTATGAGAAAGAGATTGAGATAATGCAAACAATGACAAAGGAGGAGTATTTGGCCTCTTTAAGAAGAAAGAGCAGTGGCTTCTCAAGAGGTGTATCAAAGTATAGAGGAGTTGCAAGGCACCATCACAATGGTAGATGGGAAGCAAGAATAGGGAGAGTTTATGGGAACAAATACCTCTATCTTGGAACTTACAGCACTCAAGAAGAAGCTGCTCGAGCTTATGATATGGCCGCCATTGAATACCGAGGGATCAATGCAGTCACCAACTTCGACTGGAGCAATTACATGGCCTGGTTGAAGCCTCCTCCGCCGCCATCCGCCGCCCCAAGTGAAGCCCATATGGCAACAGACCCCCACAAGGAGCTCTGCAACTCCAGCTCCATCCCAGCTGAAGAAACTTCACTCTTCAAAAACCATCACTACGACATTGATTCCTTTCATTCCCTTCAAAAGCAAGAGCTTCTTGAGAGCTGCAATGCCCCGCTCAATGCTTACGTCAGATCTTCTTCTGCATCAGCACTCGACCTCCTTCTTCGATCATCATTTTTCAAGAAACTGGTGGAGACCAACTCGAATCTCTCTGTGGATGAGGCTGATAATGGGGAAGAGGCAAAGACTCGAGTGCAGCTCGACAGTGTATTTGATGAGTTTGAAGATGTCTTCTGTGACAGAATTACAGATGTACCGTTGGTTTGCAGCTCCAACAAAGAGCTGCAAGAGAGCGAGCTTCATTCTTACTTTAATGGCACATTTCATCGCTTCAAAGCAGCCTGA | 1167 | 46.19 | MEAAALVLKNEENLRICWTEGQTQAIRRVKRRRRDSATADQTNKQQCLKQQSDQAPTTTMKRSSRFRGVSRHRWTGRFEAHLWDKLSWNMTQKKKGKQGAYDEEESAARAYDLAALKYWGVTTITNFPISEYEKEIEIMQTMTKEEYLASLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVYGNKYLYLGTYSTQEEAARAYDMAAIEYRGINAVTNFDWSNYMAWLKPPPPPSAAPSEAHMATDPHKELCNSSSIPAEETSLFKNHHYDIDSFHSLQKQELLESCNAPLNAYVRSSSASALDLLLRSSFFKKLVETNSNLSVDEADNGEEAKTRVQLDSVFDEFEDVFCDRITDVPLVCSSNKELQESELHSYFNGTFHRFKAA | 388 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 30335105 | 30339236 | + | CrPI670011_10g016250.1 | Cre10g1625 | 510927 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre10g1625 | 388 | SUPERFAMILY | DNA-binding domain | 64 | 130 | IPR016177 | GO:0003677(InterPro) | |
Cre10g1625 | 388 | MobiDBLite | consensus disorder prediction | 29 | 66 | - | - | |
Cre10g1625 | 388 | MobiDBLite | consensus disorder prediction | 40 | 64 | - | - | |
Cre10g1625 | 388 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 50 | 251 | - | - | |
Cre10g1625 | 388 | CDD | AP2 | 163 | 224 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre10g1625 | 388 | PRINTS | Ethylene responsive element binding protein signature | 204 | 224 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre10g1625 | 388 | PRINTS | Ethylene responsive element binding protein signature | 66 | 77 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre10g1625 | 388 | SMART | rav1_2 | 65 | 134 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre10g1625 | 388 | SMART | rav1_2 | 164 | 228 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre10g1625 | 388 | FunFam | AP2-like ethylene-responsive transcription factor | 163 | 224 | - | - | |
Cre10g1625 | 388 | ProSiteProfiles | AP2/ERF domain profile. | 164 | 222 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre10g1625 | 388 | CDD | AP2 | 64 | 130 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre10g1625 | 388 | ProSiteProfiles | AP2/ERF domain profile. | 65 | 128 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre10g1625 | 388 | Pfam | AP2 domain | 163 | 214 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre10g1625 | 388 | Pfam | AP2 domain | 64 | 120 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre10g1625 | 388 | Gene3D | AP2/ERF domain | 64 | 130 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre10g1625 | 388 | Gene3D | AP2/ERF domain | 163 | 223 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre10g1625 | 388 | SUPERFAMILY | DNA-binding domain | 163 | 224 | IPR016177 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre08g0826 | Cre-Chr8:21363585 | Cre10g1625 | Cre-Chr10:30335105 | 1.20E-52 | dispersed | |
Cre08g0828 | Cre-Chr8:21371787 | Cre10g1625 | Cre-Chr10:30335105 | 3.30E-35 | dispersed | |
Cre09g0328 | Cre-Chr9:3199921 | Cre10g1625 | Cre-Chr10:30335105 | 3.30E-75 | dispersed | |
Cre10g1625 | Cre-Chr10:30335105 | Cre11g1355 | Cre-Chr11:15777955 | 1.60E-64 | dispersed | |
Cre10g1625 | Cre-Chr10:30335105 | Cre05g2383 | Cre-Chr5:35373934 | 6.00E-75 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
54553 | PF00847 | AP2 | 2.50E-09 | CL0081 | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre10g1625 | - | - | - | 0.0 |