Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g1625 ATGGAGGCGGCGGCTTTGGTACTGAAGAACGAGGAGAATCTGAGAATATGTTGGACAGAAGGTCAAACTCAGGCCATAAGACGTGTCAAGAGACGGCGGAGAGACTCAGCCACCGCCGATCAAACTAATAAGCAGCAGTGTCTAAAGCAACAATCCGATCAAGCTCCGACCACCACTATGAAGCGGAGTTCAAGATTTCGTGGCGTTAGCAGACATAGATGGACGGGTCGATTTGAAGCTCATTTATGGGATAAACTTTCTTGGAATATGACACAAAAGAAGAAGGGCAAACAAGGAGCTTATGACGAAGAAGAATCAGCTGCAAGAGCATATGATTTAGCAGCACTCAAGTATTGGGGTGTAACAACCATCACTAACTTCCCTATATCAGAGTATGAGAAAGAGATTGAGATAATGCAAACAATGACAAAGGAGGAGTATTTGGCCTCTTTAAGAAGAAAGAGCAGTGGCTTCTCAAGAGGTGTATCAAAGTATAGAGGAGTTGCAAGGCACCATCACAATGGTAGATGGGAAGCAAGAATAGGGAGAGTTTATGGGAACAAATACCTCTATCTTGGAACTTACAGCACTCAAGAAGAAGCTGCTCGAGCTTATGATATGGCCGCCATTGAATACCGAGGGATCAATGCAGTCACCAACTTCGACTGGAGCAATTACATGGCCTGGTTGAAGCCTCCTCCGCCGCCATCCGCCGCCCCAAGTGAAGCCCATATGGCAACAGACCCCCACAAGGAGCTCTGCAACTCCAGCTCCATCCCAGCTGAAGAAACTTCACTCTTCAAAAACCATCACTACGACATTGATTCCTTTCATTCCCTTCAAAAGCAAGAGCTTCTTGAGAGCTGCAATGCCCCGCTCAATGCTTACGTCAGATCTTCTTCTGCATCAGCACTCGACCTCCTTCTTCGATCATCATTTTTCAAGAAACTGGTGGAGACCAACTCGAATCTCTCTGTGGATGAGGCTGATAATGGGGAAGAGGCAAAGACTCGAGTGCAGCTCGACAGTGTATTTGATGAGTTTGAAGATGTCTTCTGTGACAGAATTACAGATGTACCGTTGGTTTGCAGCTCCAACAAAGAGCTGCAAGAGAGCGAGCTTCATTCTTACTTTAATGGCACATTTCATCGCTTCAAAGCAGCCTGA 1167 46.19 MEAAALVLKNEENLRICWTEGQTQAIRRVKRRRRDSATADQTNKQQCLKQQSDQAPTTTMKRSSRFRGVSRHRWTGRFEAHLWDKLSWNMTQKKKGKQGAYDEEESAARAYDLAALKYWGVTTITNFPISEYEKEIEIMQTMTKEEYLASLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVYGNKYLYLGTYSTQEEAARAYDMAAIEYRGINAVTNFDWSNYMAWLKPPPPPSAAPSEAHMATDPHKELCNSSSIPAEETSLFKNHHYDIDSFHSLQKQELLESCNAPLNAYVRSSSASALDLLLRSSFFKKLVETNSNLSVDEADNGEEAKTRVQLDSVFDEFEDVFCDRITDVPLVCSSNKELQESELHSYFNGTFHRFKAA 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 30335105 30339236 + CrPI670011_10g016250.1 Cre10g1625 510927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g1625 388 SUPERFAMILY DNA-binding domain 64 130 IPR016177 GO:0003677(InterPro)
Cre10g1625 388 MobiDBLite consensus disorder prediction 29 66 - -
Cre10g1625 388 MobiDBLite consensus disorder prediction 40 64 - -
Cre10g1625 388 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 50 251 - -
Cre10g1625 388 CDD AP2 163 224 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre10g1625 388 PRINTS Ethylene responsive element binding protein signature 204 224 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre10g1625 388 PRINTS Ethylene responsive element binding protein signature 66 77 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre10g1625 388 SMART rav1_2 65 134 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre10g1625 388 SMART rav1_2 164 228 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre10g1625 388 FunFam AP2-like ethylene-responsive transcription factor 163 224 - -
Cre10g1625 388 ProSiteProfiles AP2/ERF domain profile. 164 222 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre10g1625 388 CDD AP2 64 130 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre10g1625 388 ProSiteProfiles AP2/ERF domain profile. 65 128 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre10g1625 388 Pfam AP2 domain 163 214 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre10g1625 388 Pfam AP2 domain 64 120 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre10g1625 388 Gene3D AP2/ERF domain 64 130 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre10g1625 388 Gene3D AP2/ERF domain 163 223 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre10g1625 388 SUPERFAMILY DNA-binding domain 163 224 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g0826 Cre-Chr8:21363585 Cre10g1625 Cre-Chr10:30335105 1.20E-52 dispersed
Cre08g0828 Cre-Chr8:21371787 Cre10g1625 Cre-Chr10:30335105 3.30E-35 dispersed
Cre09g0328 Cre-Chr9:3199921 Cre10g1625 Cre-Chr10:30335105 3.30E-75 dispersed
Cre10g1625 Cre-Chr10:30335105 Cre11g1355 Cre-Chr11:15777955 1.60E-64 dispersed
Cre10g1625 Cre-Chr10:30335105 Cre05g2383 Cre-Chr5:35373934 6.00E-75 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54553 PF00847 AP2 2.50E-09 CL0081 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g1625 - - - 0.0