Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cre10g1627 | ATGTATATAAGATCCGATGAGAATTTTAAATTACCACGAAATAAAAATCAGATCGATCGGCATCATCATCTTCCATCTGTTCTTGATAATCGAATTGCTGATTCTTCAACTCGGATCGCAAAAGAAGACTTTCATATTCTCCGATTCCTTGGCCTTTCTCTTCCTTCGTCTTCAACTGGCCTTAGAATGTATGGTTTCGAAGCGCTTACCTTCAACATTCATGGAGGCTATTTGGAGGCCATCGTCCGTGGACATAGGGCTGGCTTGCTGACCGCCGCTGATTATAACAATTTGTGTCAGTGCGAAACCCTAGATGATATCAAGATGCACCTCTCTGCCACTGAGTATGGTCCTTATCTCCAAAATGAACCATCTCCATTACATACAACAACCATTGTGGAGAAATGCACCCTTAAACTGGTTGACGAGTATAAGCACATGTTGTGCCAAGCCACTGAGCCTCTGTCTACCTTCTTAGAGTATATCACATATGGTCACATGATAGACAACGTTGTCCTTATTGTTACTGGAACCTTGCACGAGAGAGATGTTCAGGAACTGTTGGAGAAGTGCCATCCTTTGGGCATGTTTGACAGCATTGCTACCTTGGCAGTTGCTCAGAATATGCGGGAACTTTATAGATTGGTGCTTGTTGACACCCCTTTGGCTCCATACTTTTCAGAGTGTATCACATCTGAGGATTTGGATGACATGAACATAGAAATTATGAGGAACACTCTCTATAAGGCATACCTAGAGGATTTCTACAGGTTCTGTCAGAAACTGGGTGGTGCCACTGCTGAGATCATGTCTGACCTCCTTGCTTTTGAGGCTGATAGAAGGGCTGTGAATATTACCATAAATAGTATTGGCACTGAGCTTACCCGAGATGATCGAAGGAAGTTGTATTCCAATTTTGGCTTGCTTTATCCCTATGGTCATGAGGAACTTGCAATCTGTGAGGATATTGATCAGGTTCGTGGTGCCATGGAAAAATACCCTCCCTACCAGTCAATTTTTTCCAAGCTATCATATGGTGAGAGCCAGATGCTTGACAAGGCATTCTATGAAGAGGAGGTGAAAAGGCTATGCTTAGCATTTGAGCAACAGTTCCATTATGGTGTTTTCTTTGCATACATGAGGTTGAGGGAACAGGAGATTAGGAACCTTATGTGGATTTCGGAGTGTGTTGCTCAGAACCAGAAGTCGAGGCCTGCGAAACCAAACCAATCACCATCATCACCGTCGATGGACCGGAATCAGAACTTTCCGACCACCATAACCGACTTGGATGAAGATTCTCTCGCTCACTGCGCTTCATTCCTCAAGCGCCACGACATCTTCAATCTCGCCAGCACCTGCAAATATCTTCAACAAGTTGCAAATTCCGACTCCATTTGGCAACGCCTTTTCAGGGAGCGATGGCAGCATCAGTCACCACCTCTTGGTTCTTCCTTAGCTTCAGGAGGAGCTAGGAATGCCTACTTTGCTAGGCTTTCCGATTTGCAACAGTGCAAGTTTGAAGATCCTTTGGTTGCTAGTATCCTCACCCAACCCGAGCCTTATGGCCCCATGCTTTTGGATAGAGATAATATATTCGTTTCTCAGGGCTCCTCAATTCAAATGGTGACTATCACCAAAAATGTTAGCAGAGATTTTTCTCTTGCCACTCTGAATGATCACAATGCGCGTATCACTTGTATGAGGTCGTTTCCCCTTTATGAAACTTCATTTCTTAGAAGTGAAGGACAAAGATCAGGAAATTTTTTGGTAACCTCAAGTTCTGATCACTCAATCCGATTATGGTGGAAGGGTTATTGTCAGAAATGTTTTCGAGGTCATAATGGCCCTGTTTCAATTCTGTCAGATAAACTATTAGGTGATAGTAGCGGCAAATTATTGGCCAGTGGAGGGGAAGATGGTACAGTTCGCCTTTGGTCTCTTAGTTCCAGTGGCAAGCGAGGCAAGAGTGCTTTAAAGGTTACACTACATGGACATGAAAAACCAATTAAATTAATGTCAGTCGCGGGGCATAAGACTTCTCTTTTGGTGAGCATTGCAAGAGATTCCAAGGTAAGAGTTTGGGATGTTACATCAACCATCCGTTCGTCTTGTTGCGTTGGATTAACTTCTCTTCCTGGTGGTCCTATAAACCTTAAGTGCCATGAATCATTGGTCTATGTTGCTACAACTTCCTCCGTTGTTGCAATCGATTTAAGGACTATGCAGAAAGTTCTTACGGCTGCAACTTATCAACCGTTTTTATATTCATTCAAGATGATTCCTTCTAAATCCTTACTATGCACAGGTGGTAGTGGCAGTGCAAAGCTTTGGGATATAAGAAGAAACCAGGATGATCTTAAACCTAAACCAATAGCTGAATTGGATGGACATAGTGGACCAGTGAGCTTCCTACACATGGATCCCTACAAAGTTGTTACGGGATGTCCAAACGATGTTTATGTACACGTTTGGGAGGTCGATTCAGGCGCACCAGCGAATTCTTTGAGTTGCTGGTTCAATGAATATACAGAGGGCAGCACAACATTGTCCTCTATGGCTGTTGATGGGTGTAGAATTGCCACTGCCTCTTATGCTGACACGGCGAGATTGTCTCAAAATTTTGGGATTCGCAATGCTACAACGATAACAGTAATTCAAATCTTTAATAAACATCATCTAGGAAAGAAGAAGATGATGAGAAACCAATAA | 2712 | 43.1 | MYIRSDENFKLPRNKNQIDRHHHLPSVLDNRIADSSTRIAKEDFHILRFLGLSLPSSSTGLRMYGFEALTFNIHGGYLEAIVRGHRAGLLTAADYNNLCQCETLDDIKMHLSATEYGPYLQNEPSPLHTTTIVEKCTLKLVDEYKHMLCQATEPLSTFLEYITYGHMIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMRNTLYKAYLEDFYRFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLYSNFGLLYPYGHEELAICEDIDQVRGAMEKYPPYQSIFSKLSYGESQMLDKAFYEEEVKRLCLAFEQQFHYGVFFAYMRLREQEIRNLMWISECVAQNQKSRPAKPNQSPSSPSMDRNQNFPTTITDLDEDSLAHCASFLKRHDIFNLASTCKYLQQVANSDSIWQRLFRERWQHQSPPLGSSLASGGARNAYFARLSDLQQCKFEDPLVASILTQPEPYGPMLLDRDNIFVSQGSSIQMVTITKNVSRDFSLATLNDHNARITCMRSFPLYETSFLRSEGQRSGNFLVTSSSDHSIRLWWKGYCQKCFRGHNGPVSILSDKLLGDSSGKLLASGGEDGTVRLWSLSSSGKRGKSALKVTLHGHEKPIKLMSVAGHKTSLLVSIARDSKVRVWDVTSTIRSSCCVGLTSLPGGPINLKCHESLVYVATTSSVVAIDLRTMQKVLTAATYQPFLYSFKMIPSKSLLCTGGSGSAKLWDIRRNQDDLKPKPIAELDGHSGPVSFLHMDPYKVVTGCPNDVYVHVWEVDSGAPANSLSCWFNEYTEGSTTLSSMAVDGCRIATASYADTARLSQNFGIRNATTITVIQIFNKHHLGKKKMMRNQ | 903 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 30341891 | 30355038 | - | CrPI670011_10g016270.1 | Cre10g1627 | 510929 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cre10g1627 | 903 | MobiDBLite | consensus disorder prediction | 402 | 426 | - | - | |
| Cre10g1627 | 903 | SUPERFAMILY | V-type ATP synthase subunit C | 76 | 402 | IPR036079 | - | |
| Cre10g1627 | 903 | SUPERFAMILY | WD40 repeat-like | 556 | 868 | IPR036322 | GO:0005515(InterPro) | |
| Cre10g1627 | 903 | SMART | WD40_4 | 551 | 603 | IPR001680 | GO:0005515(InterPro) | |
| Cre10g1627 | 903 | SMART | WD40_4 | 604 | 647 | IPR001680 | GO:0005515(InterPro) | |
| Cre10g1627 | 903 | SMART | WD40_4 | 741 | 779 | IPR001680 | GO:0005515(InterPro) | |
| Cre10g1627 | 903 | SMART | WD40_4 | 788 | 826 | IPR001680 | GO:0005515(InterPro) | |
| Cre10g1627 | 903 | SMART | WD40_4 | 656 | 696 | IPR001680 | GO:0005515(InterPro) | |
| Cre10g1627 | 903 | ProSitePatterns | Trp-Asp (WD) repeats signature. | 683 | 697 | IPR019775 | - | |
| Cre10g1627 | 903 | Pfam | ATP synthase (C/AC39) subunit | 78 | 403 | IPR002843 | GO:0046961(InterPro) | |
| Cre10g1627 | 903 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 663 | 699 | - | - | |
| Cre10g1627 | 903 | Gene3D | - | 530 | 754 | IPR015943 | GO:0005515(InterPro) | |
| Cre10g1627 | 903 | FunFam | V-type proton ATPase subunit | 76 | 190 | - | - | |
| Cre10g1627 | 903 | SUPERFAMILY | F-box domain | 420 | 483 | IPR036047 | GO:0005515(InterPro) | |
| Cre10g1627 | 903 | PANTHER | VACUOLAR ATP SYNTHASE SUBUNIT AC39 | 63 | 404 | IPR016727 | GO:0007034(PANTHER)|GO:0007035(PANTHER)|GO:0016471(PANTHER)|GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
| Cre10g1627 | 903 | Pfam | WD domain, G-beta repeat | 606 | 647 | IPR001680 | GO:0005515(InterPro) | |
| Cre10g1627 | 903 | Pfam | WD domain, G-beta repeat | 555 | 602 | IPR001680 | GO:0005515(InterPro) | |
| Cre10g1627 | 903 | Pfam | WD domain, G-beta repeat | 661 | 696 | IPR001680 | GO:0005515(InterPro) | |
| Cre10g1627 | 903 | Gene3D | - | 755 | 898 | IPR015943 | GO:0005515(InterPro) | |
| Cre10g1627 | 903 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 630 | 650 | IPR001680 | GO:0005515(InterPro) | |
| Cre10g1627 | 903 | Gene3D | - | 153 | 261 | IPR035067 | - | |
| Cre10g1627 | 903 | Gene3D | - | 268 | 371 | IPR035067 | - | |
| Cre10g1627 | 903 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 586 | 602 | IPR001680 | GO:0005515(InterPro) | |
| Cre10g1627 | 903 | Gene3D | ATP synthase (C/AC39) subunit, domain 3 | 76 | 397 | IPR044911 | - | |
| Cre10g1627 | 903 | PRINTS | G protein beta WD-40 repeat signature | 683 | 697 | IPR020472 | - | |
| Cre10g1627 | 903 | PRINTS | G protein beta WD-40 repeat signature | 634 | 648 | IPR020472 | - | |
| Cre10g1627 | 903 | PRINTS | G protein beta WD-40 repeat signature | 590 | 604 | IPR020472 | - | |
| Cre10g1627 | 903 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 663 | 699 | IPR001680 | GO:0005515(InterPro) | |
| Cre10g1627 | 903 | ProSiteProfiles | F-box domain profile. | 424 | 470 | IPR001810 | GO:0005515(InterPro) | |
| Cre10g1627 | 903 | FunFam | V-type proton ATPase subunit | 268 | 371 | - | - | |
| Cre10g1627 | 903 | FunFam | V-type proton ATPase subunit | 153 | 267 | - | - | |
| Cre10g1627 | 903 | Pfam | F-box-like | 439 | 472 | IPR001810 | GO:0005515(InterPro) | |
| Cre10g1627 | 903 | Gene3D | - | 417 | 502 | - | - |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cre10g1627 | K02146 | - | csv:101203260 | 697.967 |