Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g1638 ATGGACTTGACTCCTGCAATTTCCACCGCCGCCGCCACCATTTCCACCGGTGGAGGAGCTGTGAAATCCCCTGAATTAGACACTGAAACCCCCATCAAAATCCAACCCACCACCAAATCTCACCCGTTCACTAACGGCGTCCTCAAGCGCCACCACCACACGGCGCCGCCGCCTCCGCAGGTGGTTTACAAAGAATGCCTCAAGAATCACGCCGCCAGTTTGGGCGGTCATGCTCTAGACGGCTGCGGCGAGTTCATGTCATCCCCCACCGCCACCGCCACCGATCCCACCTCCCTCAAATGCGCTGCTTGCGGTTGCCACCGGAATTTCCACCGCCGTGAACCGGAGGATCCAATCGCTACTCCGACGACAACCCATGTCATTGAGTACCAACCCCATCACCGCCACCACCCACCGCCGCCGCCTGCGGCGGCCCACCGGAGCCCGAGTTCCGCCTCCCCTCCTCCGATCTCCTCCTCGTACTACCCTTCAGCACCCCACATGCTTCTCGCCCTCTCCGGTGGTTTGCCGGAGAACGCCGGCAGCGGTGGTGGATTCCACCACTCGATTCTGACTCCGAGCCCCAATTCGAGAAAGCGATTCAGAACGAAATTCACTCAAAATCAGAAGGAGAAAATGTACGAATTTGCAGAGAAAGTGGGATGGAAGATTCAGAAACGAGACGAGGATATGATCCAAGAATTCTGTAGCGATGTCGGAGTTGACAGAGGCGTTCTCAAAGTTTGGATGCACAACAACAAGAACACTCTCGGGAAAAAAGACGGCGGCCGGAACATCAACGGCAGCGGTGGCGATGGGGATGGCGACGACAAAATTAACGGCGGTGGCGAGCCACACGCCACCGCAAATGGATCGTCTTCTTCCTCTTGA 891 57.35 MDLTPAISTAAATISTGGGAVKSPELDTETPIKIQPTTKSHPFTNGVLKRHHHTAPPPPQVVYKECLKNHAASLGGHALDGCGEFMSSPTATATDPTSLKCAACGCHRNFHRREPEDPIATPTTTHVIEYQPHHRHHPPPPPAAAHRSPSSASPPPISSSYYPSAPHMLLALSGGLPENAGSGGGFHHSILTPSPNSRKRFRTKFTQNQKEKMYEFAEKVGWKIQKRDEDMIQEFCSDVGVDRGVLKVWMHNNKNTLGKKDGGRNINGSGGDGDGDDKINGGGEPHATANGSSSSS 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 30525597 30526487 - CrPI670011_10g016380.1 Cre10g1638 510940

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g1638 296 MobiDBLite consensus disorder prediction 131 159 - -
Cre10g1638 296 MobiDBLite consensus disorder prediction 254 296 - -
Cre10g1638 296 MobiDBLite consensus disorder prediction 16 59 - -
Cre10g1638 296 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 63 114 IPR006456 -
Cre10g1638 296 SUPERFAMILY Homeodomain-like 191 259 IPR009057 -
Cre10g1638 296 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 63 114 IPR006456 -
Cre10g1638 296 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 45 256 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Cre10g1638 296 NCBIfam homeobox domain, ZF-HD class 198 255 IPR006455 -
Cre10g1638 296 FunFam Zinc-finger homeodomain protein 2 187 259 - -
Cre10g1638 296 Gene3D - 191 259 - -
Cre10g1638 296 Pfam ZF-HD protein dimerisation region 61 115 IPR006456 -
Cre10g1638 296 MobiDBLite consensus disorder prediction 30 44 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g1638 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0634 Cre-Chr1:5768084 Cre10g1638 Cre-Chr10:30525597 3.00E-82 dispersed
Cre10g1638 Cre-Chr10:30525597 Cre11g0510 Cre-Chr11:1998875 3.50E-35 dispersed
Cre01g1375 Cre-Chr1:26949786 Cre10g1638 Cre-Chr10:30525597 3.70E-32 transposed
Cre01g0633 Cre-Chr1:5756127 Cre10g1638 Cre-Chr10:30525597 2.70E-13 wgd
Cre01g1557 Cre-Chr1:28745342 Cre10g1638 Cre-Chr10:30525597 2.20E-13 wgd
Cre10g1638 Cre-Chr10:30525597 Cre05g2599 Cre-Chr5:37098373 2.40E-44 wgd
Cre10g1638 Cre-Chr10:30525597 Cre06g2490 Cre-Chr6:32620042 1.30E-13 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g1541 Blo10g00133 Blo11g00585 . . . . . Bma13g00147 . . . . . . . . Cpe13g00949 . . . . . . . Cla10g01433 Cam10g1180 Cec10g1514 Cco10g1496 Clacu10g1493 Cmu10g2256 Cre10g1638 . . Cone6ag0586 . . Csa05g02448 . . . . Bda07g01353 Bda12g00161 Bpe11g00081 Bpe11g01458 . Bma02g00421 . . Cmo15g00285 . Cma15g00271 . Car15g00270 . . . . . . . . . . . . . . . . . . Chy09g00254 Cme09g00278
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre08g1088 . 52 248 ZF-HD Transcription Factor Family AT5G65410 50.5 1.6e-45 180.3
Cre08g1088 . 22 244 ZF-HD Transcription Factor Family AT4G24660 50.9 3.0e-50 195.7
Cre11g0510 . 80 289 ZF-HD Transcription Factor Family AT2G02540 52.8 1.3e-51 200.7
Cre11g0510 . 77 289 ZF-HD Transcription Factor Family AT1G14440 54.6 4.2e-55 212.2
Cre04g1570 . 129 335 ZF-HD Transcription Factor Family AT2G18350 52.9 3.4e-50 195.7
Cre10g1638 . 12 268 ZF-HD Transcription Factor Family AT5G15210 53.9 3.2e-51 199.1
Cre01g0634 . 6 254 ZF-HD Transcription Factor Family AT5G15210 52.6 1.2e-50 197.2
Cre10g1638 . 22 281 ZF-HD Transcription Factor Family AT3G28920 61.5 1.1e-60 230.7
Cre01g0634 . 16 256 ZF-HD Transcription Factor Family AT3G28920 59.3 3.1e-58 222.6
Cre01g0634 . 24 260 ZF-HD Transcription Factor Family AT5G39760 56.4 3.0e-51 199.5
Cre10g1638 . 30 271 ZF-HD Transcription Factor Family AT5G39760 56.1 2.4e-48 189.9
Cre01g0634 . 56 257 ZF-HD Transcription Factor Family AT1G69600 50.2 1.5e-47 186.8
Cre11g0510 . 80 289 ZF-HD Transcription Factor Family AT2G02540 52.8 1.3e-51 200.7
Cre08g1088 . 22 244 ZF-HD Transcription Factor Family AT4G24660 50.9 3.0e-50 195.7
Cre01g0634 . 24 260 ZF-HD Transcription Factor Family AT5G39760 56.4 3.0e-51 199.5
Cre10g1638 . 30 271 ZF-HD Transcription Factor Family AT5G39760 56.1 2.4e-48 189.9
Cre04g1570 . 129 335 ZF-HD Transcription Factor Family AT2G18350 52.9 3.4e-50 195.7
Cre08g1088 . 52 248 ZF-HD Transcription Factor Family AT5G65410 50.5 1.6e-45 180.3
Cre01g0634 . 56 257 ZF-HD Transcription Factor Family AT1G69600 50.2 1.5e-47 186.8
Cre10g1638 . 12 268 ZF-HD Transcription Factor Family AT5G15210 53.9 3.2e-51 199.1
Cre01g0634 . 6 254 ZF-HD Transcription Factor Family AT5G15210 52.6 1.2e-50 197.2
Cre11g0510 . 77 289 ZF-HD Transcription Factor Family AT1G14440 54.6 4.2e-55 212.2
Cre10g1638 . 22 281 ZF-HD Transcription Factor Family AT3G28920 61.5 1.1e-60 230.7
Cre01g0634 . 16 256 ZF-HD Transcription Factor Family AT3G28920 59.3 3.1e-58 222.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001346 3 2 3 3 3 2 4 2 2 2 2 2 3 2 2 3 2 4 4 2 2 2 3 2 2 3 2 3 2 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54555 PF04770 ZF-HD_dimer 7.50E-29 No_clan Cre TF