Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g1638 ATGGACTTGACTCCTGCAATTTCCACCGCCGCCGCCACCATTTCCACCGGTGGAGGAGCTGTGAAATCCCCTGAATTAGACACTGAAACCCCCATCAAAATCCAACCCACCACCAAATCTCACCCGTTCACTAACGGCGTCCTCAAGCGCCACCACCACACGGCGCCGCCGCCTCCGCAGGTGGTTTACAAAGAATGCCTCAAGAATCACGCCGCCAGTTTGGGCGGTCATGCTCTAGACGGCTGCGGCGAGTTCATGTCATCCCCCACCGCCACCGCCACCGATCCCACCTCCCTCAAATGCGCTGCTTGCGGTTGCCACCGGAATTTCCACCGCCGTGAACCGGAGGATCCAATCGCTACTCCGACGACAACCCATGTCATTGAGTACCAACCCCATCACCGCCACCACCCACCGCCGCCGCCTGCGGCGGCCCACCGGAGCCCGAGTTCCGCCTCCCCTCCTCCGATCTCCTCCTCGTACTACCCTTCAGCACCCCACATGCTTCTCGCCCTCTCCGGTGGTTTGCCGGAGAACGCCGGCAGCGGTGGTGGATTCCACCACTCGATTCTGACTCCGAGCCCCAATTCGAGAAAGCGATTCAGAACGAAATTCACTCAAAATCAGAAGGAGAAAATGTACGAATTTGCAGAGAAAGTGGGATGGAAGATTCAGAAACGAGACGAGGATATGATCCAAGAATTCTGTAGCGATGTCGGAGTTGACAGAGGCGTTCTCAAAGTTTGGATGCACAACAACAAGAACACTCTCGGGAAAAAAGACGGCGGCCGGAACATCAACGGCAGCGGTGGCGATGGGGATGGCGACGACAAAATTAACGGCGGTGGCGAGCCACACGCCACCGCAAATGGATCGTCTTCTTCCTCTTGA 891 57.35 MDLTPAISTAAATISTGGGAVKSPELDTETPIKIQPTTKSHPFTNGVLKRHHHTAPPPPQVVYKECLKNHAASLGGHALDGCGEFMSSPTATATDPTSLKCAACGCHRNFHRREPEDPIATPTTTHVIEYQPHHRHHPPPPPAAAHRSPSSASPPPISSSYYPSAPHMLLALSGGLPENAGSGGGFHHSILTPSPNSRKRFRTKFTQNQKEKMYEFAEKVGWKIQKRDEDMIQEFCSDVGVDRGVLKVWMHNNKNTLGKKDGGRNINGSGGDGDGDDKINGGGEPHATANGSSSSS 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 30525597 30526487 - CrPI670011_10g016380.1 Cre10g1638 510940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g1638 296 MobiDBLite consensus disorder prediction 131 159 - -
Cre10g1638 296 MobiDBLite consensus disorder prediction 254 296 - -
Cre10g1638 296 MobiDBLite consensus disorder prediction 16 59 - -
Cre10g1638 296 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 63 114 IPR006456 -
Cre10g1638 296 SUPERFAMILY Homeodomain-like 191 259 IPR009057 -
Cre10g1638 296 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 63 114 IPR006456 -
Cre10g1638 296 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 45 256 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Cre10g1638 296 NCBIfam homeobox domain, ZF-HD class 198 255 IPR006455 -
Cre10g1638 296 FunFam Zinc-finger homeodomain protein 2 187 259 - -
Cre10g1638 296 Gene3D - 191 259 - -
Cre10g1638 296 Pfam ZF-HD protein dimerisation region 61 115 IPR006456 -
Cre10g1638 296 MobiDBLite consensus disorder prediction 30 44 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0634 Cre-Chr1:5768084 Cre10g1638 Cre-Chr10:30525597 3.00E-82 dispersed
Cre10g1638 Cre-Chr10:30525597 Cre11g0510 Cre-Chr11:1998875 3.50E-35 dispersed
Cre01g1375 Cre-Chr1:26949786 Cre10g1638 Cre-Chr10:30525597 3.70E-32 transposed
Cre01g0633 Cre-Chr1:5756127 Cre10g1638 Cre-Chr10:30525597 2.70E-13 wgd
Cre01g1557 Cre-Chr1:28745342 Cre10g1638 Cre-Chr10:30525597 2.20E-13 wgd
Cre10g1638 Cre-Chr10:30525597 Cre05g2599 Cre-Chr5:37098373 2.40E-44 wgd
Cre10g1638 Cre-Chr10:30525597 Cre06g2490 Cre-Chr6:32620042 1.30E-13 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54555 PF04770 ZF-HD_dimer 7.50E-29 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g1638 - - - 0.0