Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g1640 ATGGCGAGAGCGATCCCAAAATCTAGCAATGAAGAAGCGTTCATCTCCTTGGGAAGCGAATACTCCGATCCTCAACAATCCTTCTTCCGCGACCGATTTTACGAACTTTACCCTCCGGAGTTCTCAAGGAAGCTTGTGGCGGAGGTGATTGCGACGTATTTGCTTGTGTTCGTGACATGTGGGGCGGCGGCATTGAGTGTTGGTCATGAACGGGAAGTGTCGAAGCTTGGAGCATCGATTTCCGGTGGACTGATTGTGACGGTGATGATTTACGCCGTCGGACATATCTCCGGCGCCCATATGAATCCGGCCGTTACTTTTGCTTTTGCTGCTGTTCGGCGATTTCCATGGAACCAGGTTCCACTGTATGCAGCAGCTCAATTAAGTGGAGCTACAACAGCAGCCTTTACATTGCGCATATTATTGGACCCAATTCAAGACTTAGGTACAACTTCACCTTCTGGACCAGCGTCTAAAGCACTCCTCATGGAGATTGTTGTCTCATTCTGTATGATGTTTGTCACATCTGCGGTTGCTACCGACACAAAAGCTATAGGAGAGCTTGGAGGCATAGCAGTGGGGTCAGCTGTATGTATCACATCCATCTTTGCTGGGCCAATATCGGGTGGGTCGATGAACCCAGCAAGGTCAATTGGACCAGCGATTGCAAGTTCACATTACGAAGGGATTTGGGTGTACTTGGTCGGCCCAGTTACTGGGACATTGCTTGGGGCATTTTCATATAACTTCGTACGAGCCACTGAAAAACATACCCATCCACTCTCTTTACATTGA 795 48.81 MARAIPKSSNEEAFISLGSEYSDPQQSFFRDRFYELYPPEFSRKLVAEVIATYLLVFVTCGAAALSVGHEREVSKLGASISGGLIVTVMIYAVGHISGAHMNPAVTFAFAAVRRFPWNQVPLYAAAQLSGATTAAFTLRILLDPIQDLGTTSPSGPASKALLMEIVVSFCMMFVTSAVATDTKAIGELGGIAVGSAVCITSIFAGPISGGSMNPARSIGPAIASSHYEGIWVYLVGPVTGTLLGAFSYNFVRATEKHTHPLSLH 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 30584880 30588299 - CrPI670011_10g016400.1 Cre10g1640 510942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g1640 264 Pfam Major intrinsic protein 39 248 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre10g1640 264 Gene3D Glycerol uptake facilitator protein. 19 260 IPR023271 -
Cre10g1640 264 PANTHER AQUAPORIN NIP2-1 36 256 IPR034294 -
Cre10g1640 264 PRINTS Major intrinsic protein family signature 194 216 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre10g1640 264 PRINTS Major intrinsic protein family signature 82 106 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre10g1640 264 PRINTS Major intrinsic protein family signature 231 251 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre10g1640 264 PRINTS Major intrinsic protein family signature 43 62 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre10g1640 264 PRINTS Major intrinsic protein family signature 163 181 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre10g1640 264 PRINTS Major intrinsic protein family signature 119 138 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre10g1640 264 SUPERFAMILY Aquaporin-like 34 258 IPR023271 -
Cre10g1640 264 ProSitePatterns MIP family signature. 100 108 IPR022357 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g2013 Cre-Chr4:37457803 Cre10g1640 Cre-Chr10:30584880 4.80E-56 dispersed
Cre05g1275 Cre-Chr5:12977612 Cre10g1640 Cre-Chr10:30584880 1.40E-54 dispersed
Cre10g1640 Cre-Chr10:30584880 Cre10g1641 Cre-Chr10:30625862 1.50E-98 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g1640 K09874 - csv:101205456 427.172