Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g1677 ATGGGGATTAAATTTTCAAAGCCAAATCAGGGGAAGGTGGATAACCTTAGTCTGCAACACCACCTGATCAATTATCTCTCGAAAAGCTTTTACATCCGGAACTTGGTATCCAAGCAAAGGAGGCGCATGCTTGTTGCTGGCTATGATCTTGACATGTCATACATCACTGATCATGTACTAGCAATGTCATTCCCTGCAGAACGTATGCGCGCAATGTATCGTAATCCCCTATGGCAGGTTAAGTCCGTACTGGACATGAGGCATCAAGGACATTACAAGATCTATAATCTCTGTATTGAAGAATCATATGATCCCTCACATTTTCATGGGCGGGTGGAGTCGTTTCCTTTCGATGATAATCATGTTCCACCTCTACAGATGATCAAAATCTTCTGTGAAAATGTCTCTTCATGGCTATCGTCCCACCCAAAGAATATTGCAGTTATACATTGCATGGCTGGAAAAGGTCGAACAGGATTGATGGTCTGTGCCTACTTGGTTTACTGTGGCATGTCAGCGGAGGATGCACTTCAGCTGTATGCTCAGAGGCGGACGACCAATAACGAAGGAGTATCAATTCCAAGCCAACGACGGTACGTGGGCTACTGGTCAAAGTGCCTTTCCTTTCCCAAGGGAGTTTATAATGGACCTCCTGAGGTGAAGTTGCCCGAACCATGTAGGAGAGAGTTGCAGAGAATTCGTCTTTATGACACAGTTAACACTGAATCAATTTTCTTTGTGGTCTCAGAATTGCAGGAGGTTCCTTCTCAACTATATCGTCCATCTATGGAACTTACCAGGAATTGTTGCAGACAATTTAAGAGAGGATATGAGAGGAGTAACAGTCCTCGTTATTTTCTATCTTTTGTTGAAGGCGAAAATGAAGGGAACAAGTCCGAAGTAGAGCCCCATCTTATTGTTCAAATGGATACCGAGTGTTCCGCACTATACCACAAAACCTGCCTTGACTACAATTTCGAGAAGCCTCTACCACTAACTGGAGATGTTCGCATCATATTCTACGCAAAGATGTTTGGAGGGCGTCTCTTCTATGCTTGCTTCAACACAGCCTTCATTAAAAACAGCTTGCTACAGCTAAGGTTGCAGGATTTGGACAAAGTTGGGAAAAAGGGAAGGTCACTTTGTGGTCCTTCCTTCTGCTTGGAGTTGTGTTTAAACCGACCTCTCCACTTCTTTGCTCCTCCATCGTCGCTCTCCCTCAATATCGCCGTCACCGCCGCCGCCGCCGCCGCCGCCGTGGAGCGCCTGCCAGATTTGAGAACCCAACAGGCGACATCTGAAGCTCTAGGAATGGACCCCAAGCACACAGGAGAGATTTTGAAGCATTTGGAGAAGCAGGATGAGTTTCTTATGGATGCTTATAGATCAATGTCCCATGAACTACATAAGCTTCAGGTAGAAGAAGAAATGCTCATGTGCAAGTTTTATGAAATAATGTCAGCTCATGGTCTAACAAAGAAGAGTGACGATGATCGTAATAGTTCTGGCAGCGTTAGGAATGGCGATAACAACCTCTAA 1539 44.96 MGIKFSKPNQGKVDNLSLQHHLINYLSKSFYIRNLVSKQRRRMLVAGYDLDMSYITDHVLAMSFPAERMRAMYRNPLWQVKSVLDMRHQGHYKIYNLCIEESYDPSHFHGRVESFPFDDNHVPPLQMIKIFCENVSSWLSSHPKNIAVIHCMAGKGRTGLMVCAYLVYCGMSAEDALQLYAQRRTTNNEGVSIPSQRRYVGYWSKCLSFPKGVYNGPPEVKLPEPCRRELQRIRLYDTVNTESIFFVVSELQEVPSQLYRPSMELTRNCCRQFKRGYERSNSPRYFLSFVEGENEGNKSEVEPHLIVQMDTECSALYHKTCLDYNFEKPLPLTGDVRIIFYAKMFGGRLFYACFNTAFIKNSLLQLRLQDLDKVGKKGRSLCGPSFCLELCLNRPLHFFAPPSSLSLNIAVTAAAAAAAVERLPDLRTQQATSEALGMDPKHTGEILKHLEKQDEFLMDAYRSMSHELHKLQVEEEMLMCKFYEIMSAHGLTKKSDDDRNSSGSVRNGDNNL 512
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 30991356 31001126 + CrPI670011_10g016770.1 Cre10g1677 510979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g1677 512 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 49 207 IPR029021 -
Cre10g1677 512 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 292 393 IPR035892 -
Cre10g1677 512 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 129 184 IPR000387 GO:0016311(InterPro)
Cre10g1677 512 Pfam Polymorphic toxin system, DSP-PTPase phosphatase 113 170 - -
Cre10g1677 512 ProSitePatterns Tyrosine specific protein phosphatases active site. 149 159 IPR016130 GO:0016311(InterPro)
Cre10g1677 512 Pfam C2 domain of PTEN tumour-suppressor protein 314 392 IPR014020 -
Cre10g1677 512 ProSiteProfiles Phosphatase tensin-type domain profile. 41 210 IPR029023 -
Cre10g1677 512 Gene3D - 275 395 - -
Cre10g1677 512 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 30 394 IPR051281 GO:0004725(PANTHER)|GO:0005829(PANTHER)|GO:0016311(PANTHER)|GO:0016314(PANTHER)|GO:0046856(PANTHER)
Cre10g1677 512 MobiDBLite consensus disorder prediction 493 512 - -
Cre10g1677 512 SMART PTEN_C2_2 223 394 IPR014020 -
Cre10g1677 512 FunFam Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN 28 210 - -
Cre10g1677 512 CDD PTP_PTEN 51 205 IPR045101 GO:0016791(InterPro)
Cre10g1677 512 ProSiteProfiles C2 tensin-type domain profile. 241 395 IPR014020 -
Cre10g1677 512 Gene3D Protein tyrosine phosphatase superfamily 28 209 IPR029021 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1330 Cre-Chr4:32115620 Cre10g1677 Cre-Chr10:30991356 1.90E-39 dispersed
Cre10g1677 Cre-Chr10:30991356 Cre02g0980 Cre-Chr2:7185701 9.70E-41 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g1677 K01110 - csv:101212127 781.941