Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cre10g1703 | CGAGCGGCAATGAATATGGAGCAGTATCTTCTGAAGGACTTCGAAGTTGAGCCAAAACATCCTTCAGAGGAAGCCTTGAGGAGATGGAGATCTGCCGTCTCTATCGTCAGAAATCGACGACGGAGGTTCCGAAATGTTGCAGATCTCGATAAACGCTCTGAGGCCGAGAAAAAGAAGCTCAAAATCCAGGAAAAAATTCGAGTTGCTCTTTATGTTCAGAAGGCAGCATTACAGTTTATTGATGCCGTGAATCGGGATGAGTACCATCTGTCAGATGAGGCTAGGAGAGCTGGCTATAGTATTCATCCAGATGAGCTTGCATCCATAGTCCGTAGCCATGATTACAAGGCATTGAGATTCCATGGTGGTGTGGAAGGACTTTCAAGGAAAGTTTCTGTTGCACTAGACACAGGTGTCAGTGAAAAAGATACATCCAAGAGACAAGAGATTTATGGTTACAATCGTTACACAGAGAAACCTTCCAGACCCTTTTGGGTGTTTGTATGGGAAGCATTACACGACTTGACATTAATCATCCTAATATTTTGTGCACTAATTTCTTTAGGCGTTGGTATTGCCACAGAAGGGTGGCCGAAGGGAACATATGATGGTTTAGGAATTCTACTCAGTATATTATTGGTCGTCTTGGTTACTTCTATTAGTGATTACAAGCAGTCTTTGCAATTCAAGGATCTTGACAGGGAGAAGAAAAAAATTTATGTTGATGTCACTAGGGATGGGCTGAGGAAAAAAGTTTCCATTTATGACTTGGTTGTTGGAGATATTGTTCATCTATCCATTGGAGATCAGGTTCCCGCTGATGGGGTTTTCATATCAGGATATAGTCTACTAATTGATGAATCCAGCTTATCAGGTGAGAGTGAACCAGTGAACATAGATGAGGAGAAACCATTTCTTCTATCAGGAACCAAAGTGCAAGATGGATCTGGAAAGATGATGGTAACAACAGTTGGTATGAAAACTGAATGGGGAAAACTGATGGAAACTCTCAGTGAGGGAGGAGAAGACGAGACTCCACTGCAGGTGAAGCTGAATGGTGTAGCAACTCTTATTGGTAAAATTGGTTTGACTTTTGCTGTATTGACATTCCTGGTGATGACAGGAAGGTTTCTCGGAGAAAAAGCTGCTCACCATCAATTTACAAAGTGGACTTCAAGTGATGCTCTAAAACTCTTAGATTTCTTTGCCGTTGCAGTTACCATAATAGTTGTCGCAGTTCCTGAAGGTTTACCACTGGCAGTGACATTAAGCCTTGCCTTTGCTATGAAGAAATTGATGGATGAAAGAGCACTAGTTAGGCATCTGTCTGCATGTGAAACAATGGGTTCGGCCAGTTGCATTTGCACAGATAAGACTGGGACATTAACCACAAACCATATGATAGTTAGCCGTGCATGGGTGTGTGAAAATCTTATGGAGAATAAAGACCATGGGAGTGTAGACAAATTGAAATCAGAGATCTCTGAAGATGTTTTAGGCATATTCTTGCAGTCCATATTTCAAAATACCAGCTGCGAAGTGACTAAAGATAAAGAGGGGAAGAACTCAATCGTTGGTGGAACACCAACGGAATCAGCACTATTGGAGTTTGGCATCCATTTGGGTGGGGATTTTCGTGCCCAACGTACAGAATATAAGATACTTAAGGTTGAGCCTTTCAATTCTGTTAGGAAGAAGATGTCTGTACTTGTAGCGCTTCCTAATGGTGGGGTCAGAGCTTTTGTCAAAGGTGCATCTGAAATAATACTAAGTATGTGTGACAAGTATATTGATTCCAATGGAGAATCTATCGATTTAACAGAAGAGAAGGTAAATAATGCTACAAATGTTATCAATAGTTTTGCCAATGAAGCCTTGAGGACACTTTGCTTGGCCTTCAAAGATATAGAAGACTCCGGTGACAAATCAATTCCAGATGATGGATATACATTAATTGCAATTGTTGGGATCAAGGATCCTGTACGCCCAGGGGTCAAGGAAGCTGTTAAAACTTGTTTAGCAGCTGGAATAACTGTGCGTATGGTCACTGGTGACAATATTAATACAGCAAAGGCTATTGCTAAAGAATGTGGTATACTTACAGCCGATGGTTTAGCTATAGAAGGACCAAACTTCCGTAATTTATCTCCAGAACAGATGAAGCAAGTTATACCAAAACTGCAGGTGATGGCTCGGTCCTTGCCGCTGGACAAATACACATTGGTTAACAATTTGCGGAGTATGGGTGAGGTTGTTGCAGTGACTGGAGATGGGACGAATGATGCTCCAGCTTTGCATGAGTCAGATATTGGACTAGCTATGGGCATTGCCGGAACTGAGGTGGCCAAAGAAAATGCCGATGTGATCATAATGGATGACAATTTTTCAACTATTGTAAATGTTGCGAGATGGGGACGTGCGGTGTACATTAACATACAAAAGTTTGTGCAGTTTCAGCTAACAGTTAACATTGTTGCTCTAGTGATCAATTTCGTTTCTGCTTGCCTCTCAGGATCTGCTCCTCTTACGGCTGTACAGTTGCTTTGGGTGAACTTGATTATGGACACTCTTGGTGCTTTGGCACTGGCCACAGAGCCTCCAAATGATGGACTTATGCAGAGACCTCCAATTCCCAAGGGGGTTAACTTTATTACCAAAGCCATGTGGAGGAACATTATTGGTCAGAGTATCTATCAACTTGCTGTACTGGCAGTTCTTAATTTTGGGGGAAAGCAACTTCTTGGACTTAATGGATCTGATTCCACAAAAGTTCTCAACACTTTGATATTCAACTCATTTGTGTTCTGCCAGGTTTTCAACGAAATTAACAGCCGTGAGATCGAAAAGATCAACATCTTCCGAGGGATGTTCAGCAGCTGGATATTTTTGGGAGTAATGGTATCCACAGTGGGGTTTCAAATAATAATTATAGAACTTTTGGGAGCTTTTGCAAGCACTGTACCACTGAGCTGGGAACTATGGGGACTCAGTGTGTTGATTGGATTTGTGAGCATGCCAGTTGCAGTCGTGTTGAAGTTCATCCCTGTTCGTAAAGAAGTATTCACAGCCCAACATGATGGCTATGAACCAATCCCTTCTGGCCCAGAGCTGGCTTGA | 3117 | 42.09 | RAAMNMEQYLLKDFEVEPKHPSEEALRRWRSAVSIVRNRRRRFRNVADLDKRSEAEKKKLKIQEKIRVALYVQKAALQFIDAVNRDEYHLSDEARRAGYSIHPDELASIVRSHDYKALRFHGGVEGLSRKVSVALDTGVSEKDTSKRQEIYGYNRYTEKPSRPFWVFVWEALHDLTLIILIFCALISLGVGIATEGWPKGTYDGLGILLSILLVVLVTSISDYKQSLQFKDLDREKKKIYVDVTRDGLRKKVSIYDLVVGDIVHLSIGDQVPADGVFISGYSLLIDESSLSGESEPVNIDEEKPFLLSGTKVQDGSGKMMVTTVGMKTEWGKLMETLSEGGEDETPLQVKLNGVATLIGKIGLTFAVLTFLVMTGRFLGEKAAHHQFTKWTSSDALKLLDFFAVAVTIIVVAVPEGLPLAVTLSLAFAMKKLMDERALVRHLSACETMGSASCICTDKTGTLTTNHMIVSRAWVCENLMENKDHGSVDKLKSEISEDVLGIFLQSIFQNTSCEVTKDKEGKNSIVGGTPTESALLEFGIHLGGDFRAQRTEYKILKVEPFNSVRKKMSVLVALPNGGVRAFVKGASEIILSMCDKYIDSNGESIDLTEEKVNNATNVINSFANEALRTLCLAFKDIEDSGDKSIPDDGYTLIAIVGIKDPVRPGVKEAVKTCLAAGITVRMVTGDNINTAKAIAKECGILTADGLAIEGPNFRNLSPEQMKQVIPKLQVMARSLPLDKYTLVNNLRSMGEVVAVTGDGTNDAPALHESDIGLAMGIAGTEVAKENADVIIMDDNFSTIVNVARWGRAVYINIQKFVQFQLTVNIVALVINFVSACLSGSAPLTAVQLLWVNLIMDTLGALALATEPPNDGLMQRPPIPKGVNFITKAMWRNIIGQSIYQLAVLAVLNFGGKQLLGLNGSDSTKVLNTLIFNSFVFCQVFNEINSREIEKINIFRGMFSSWIFLGVMVSTVGFQIIIIELLGAFASTVPLSWELWGLSVLIGFVSMPVAVVLKFIPVRKEVFTAQHDGYEPIPSGPELA | 1038 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 31221713 | 31235405 | - | CrPI670011_10g017030.1 | Cre10g1703 | 511005 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cre10g1703 | 1038 | Pfam | Cation transporter/ATPase, N-terminus | 121 | 187 | IPR004014 | - | |
| Cre10g1703 | 1038 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 121 | 1017 | IPR023298 | - | |
| Cre10g1703 | 1038 | Pfam | Ca2+-ATPase N terminal autoinhibitory domain | 11 | 54 | IPR024750 | GO:0005516(InterPro) | |
| Cre10g1703 | 1038 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 457 | 463 | IPR018303 | - | |
| Cre10g1703 | 1038 | Coils | Coil | 604 | 624 | - | - | |
| Cre10g1703 | 1038 | Gene3D | - | 21 | 82 | - | - | |
| Cre10g1703 | 1038 | PRINTS | H+-transporting ATPase (proton pump) signature | 614 | 632 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cre10g1703 | 1038 | PRINTS | H+-transporting ATPase (proton pump) signature | 787 | 812 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cre10g1703 | 1038 | PRINTS | H+-transporting ATPase (proton pump) signature | 755 | 771 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cre10g1703 | 1038 | FunFam | Calcium-transporting ATPase | 772 | 1018 | - | - | |
| Cre10g1703 | 1038 | FunFam | Calcium-transporting ATPase | 465 | 660 | - | - | |
| Cre10g1703 | 1038 | SFLD | p-type atpase | 437 | 807 | IPR044492 | - | |
| Cre10g1703 | 1038 | SUPERFAMILY | HAD-like | 454 | 860 | IPR036412 | - | |
| Cre10g1703 | 1038 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 461 | 665 | IPR023299 | GO:0000166(InterPro) | |
| Cre10g1703 | 1038 | SUPERFAMILY | Calcium ATPase, transduction domain A | 240 | 336 | IPR008250 | - | |
| Cre10g1703 | 1038 | PRINTS | P-type cation-transporting ATPase superfamily signature | 286 | 300 | - | - | |
| Cre10g1703 | 1038 | PRINTS | P-type cation-transporting ATPase superfamily signature | 455 | 469 | - | - | |
| Cre10g1703 | 1038 | PRINTS | P-type cation-transporting ATPase superfamily signature | 779 | 791 | - | - | |
| Cre10g1703 | 1038 | PRINTS | P-type cation-transporting ATPase superfamily signature | 755 | 774 | - | - | |
| Cre10g1703 | 1038 | PRINTS | P-type cation-transporting ATPase superfamily signature | 653 | 664 | - | - | |
| Cre10g1703 | 1038 | PRINTS | P-type cation-transporting ATPase superfamily signature | 675 | 685 | - | - | |
| Cre10g1703 | 1038 | Pfam | Cation transporting ATPase, C-terminus | 840 | 1014 | IPR006068 | - | |
| Cre10g1703 | 1038 | Gene3D | - | 170 | 1014 | - | - | |
| Cre10g1703 | 1038 | Gene3D | - | 452 | 800 | IPR023214 | - | |
| Cre10g1703 | 1038 | FunFam | Calcium-transporting ATPase | 21 | 81 | - | - | |
| Cre10g1703 | 1038 | SFLD | C1.7: P-type atpase like | 437 | 807 | - | - | |
| Cre10g1703 | 1038 | Pfam | haloacid dehalogenase-like hydrolase | 647 | 767 | - | - | |
| Cre10g1703 | 1038 | CDD | P-type_ATPase_Ca_PMCA-like | 145 | 888 | - | - | |
| Cre10g1703 | 1038 | Gene3D | - | 137 | 338 | - | - | |
| Cre10g1703 | 1038 | Pfam | Cation transport ATPase (P-type) | 511 | 596 | - | - | |
| Cre10g1703 | 1038 | SMART | Cation_ATPase_N_a_2 | 118 | 192 | IPR004014 | - | |
| Cre10g1703 | 1038 | PANTHER | CATION TRANSPORTING ATPASE | 81 | 1016 | - | GO:0005388(PANTHER)|GO:0005887(PANTHER)|GO:0019829(PANTHER)|GO:0043231(PANTHER) | |
| Cre10g1703 | 1038 | NCBIfam | HAD-IC family P-type ATPase | 721 | 843 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cre10g1703 | 1038 | NCBIfam | HAD-IC family P-type ATPase | 207 | 484 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cre10g1703 | 1038 | NCBIfam | HAD-IC family P-type ATPase | 553 | 700 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cre10g1703 | 1038 | NCBIfam | calcium-translocating P-type ATPase, PMCA-type | 114 | 1017 | IPR006408 | GO:0005388(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0070588(InterPro) | |
| Cre10g1703 | 1038 | Gene3D | - | 465 | 660 | IPR023299 | GO:0000166(InterPro) | |
| Cre10g1703 | 1038 | FunFam | Calcium-transporting ATPase | 653 | 800 | - | - | |
| Cre10g1703 | 1038 | FunFam | Calcium-transporting ATPase | 217 | 338 | - | - | |
| Cre10g1703 | 1038 | Pfam | E1-E2 ATPase | 238 | 433 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cre05g2241 | Cre-Chr5:34029112 | Cre10g1703 | Cre-Chr10:31221713 | 0.00E+00 | dispersed | |
| Cre09g0700 | Cre-Chr9:6774237 | Cre10g1703 | Cre-Chr10:31221713 | 3.00E-235 | dispersed | |
| Cre09g1720 | Cre-Chr9:35435666 | Cre10g1703 | Cre-Chr10:31221713 | 0.00E+00 | dispersed | |
| Cre10g1703 | Cre-Chr10:31221713 | Cre11g1583 | Cre-Chr11:25790856 | 7.50E-266 | dispersed | |
| Cre10g1703 | Cre-Chr10:31221713 | Cre04g1382 | Cre-Chr4:32638277 | 0.00E+00 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cre10g1703 | K01537 | - | csv:101206199 | 1878.6 |