Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g1709 ATGACTTTAAAAAGGAAAAAGACTTCATCTTACTCAACCTCTCCCACCGTCTCCTCCCCCTCTCGGCTCTCGCTGCGGCCTGTCCCTCATCTTCCTCCACATTCTCACCATCGCTACGCCATGGTTTGCCGCTGCTTCTGCCCGGTGGTTCAGAGTCCACACATGTGGCATGCAATGGCACCCTCCCAGGCCTTCCAAATTCCGGAGGACAACATAGTCTTGGTTGCAGTTTCCATGGCTTCTTCGTCCTCTGATCCTGGCTTCAAACCCGAACCCGGTGCTTGTAGCGCTGCTGCTGCTGCCGGAAGAGGAACGGCGGAATCTTCCGAGGTTGTAATGGCGAATGATCAGCTTCTACTGTACAGAGGGTTGAAGAAAGCGAAGAAAGAGAGAGGTTGCACTGCTAAAGAACGCATCAGTAAAATGCCTCCGTGTGCTGCTGGAAAAAGAAGCTCGATATACCGCGGAGTCACTAGAGCTAAACATAAGAGGAATTTTCCGGGTAGTGCTGATCTGTCCGCAGATGTGGTATACAGGACCATAATTATTGAGTTCATGAGCGCCTGTGAATGGTCTGATGATATTAGGCATAGATGGACTGGTCGTTATGAAGCTCATCTTTGGGATAAGAGTACTTGGAACCAGAACCAGAATAAGAAGGGAAAGCAAGGAGCATATGATGAAGAAGAGGCCGCTGCTAGGGCATACGATCTGGCTGCCTTAAAATATTGGGGTCCTGGGACTCTTATTAATTTTCCAGTGACTGATTATACAAGGGACCTTGAAGAAATGCAGAATGTTTCAAGAGAGGAATACCTTGCATCTCTAAGGAGAAAGAGCAGTGGATTCTCCAGGGGAATATCCAAATATCGTGGTCTCTCAAGTCGATGGGAGCCTTCATTTGGTCGTATGCCGGGTCCTGATTATGTTAACAGCATAAATTATGGTGCTGGAGATGATCAAGCAACTGAAAGTGAATTCGTCCAGAGCTTCTGCATTGAAAGGAAGATTGACTTAACAAGTCACATTAAGTGGTGGGGGCCCAACAAAACTCGAACGGCCAGTGCTGGCTCGAAGTCATCAGAAGAAGACAAAAATAGTTGTGCTGGAGAAGTTGGCAGTGAACTCAAAGCTCTGGGACAGACCGCCCGTCCTACAGAGCCATATGAGATGCCCTGTTTGGGTACATTACATGGAGTAAAGAAGGCTGCTTCCAAGGTCTCTGCTTTAAGCATTTTGTCCCGGTCAGCAGCCTACAAGAGTTTGCAGGAGAAAGCTTTGAAATTACAGGAAATTAACAACGAGAATGATGAGAATGAAAATAAAAACACTGTTAACAAGACAGATCATGGGAAAGTGGTCGAAACACATACAAGTCATGGTGGTGATCCCAGCGAGAGATTTGGGGTTGCTTTTGGAACAAGTGGTGGATTGCCACTTCAGAGAAATGTGTTCCCCTTGACTCCATTCTTAACAGCACCTCTTCTTAGCAGTTACAACACTGTTGATCCCTTGGGAGATCCGATTCATTGGACATCTCTCGTCTCTGTTCTTCCTAGTGGACTTTCTCGTACAGCCGAGTGTTTTACACCCAGTTATCTGGTGAACATAGTTGGAAGGATAAGAATGGCTGGAAGCTTGCGTTTGGATGACATTGCCCTGCTGTATGCCCCCAGAAGAGAAGGCGAGGATGAGGATGGGTAG 1704 47.24 MTLKRKKTSSYSTSPTVSSPSRLSLRPVPHLPPHSHHRYAMVCRCFCPVVQSPHMWHAMAPSQAFQIPEDNIVLVAVSMASSSSDPGFKPEPGACSAAAAAGRGTAESSEVVMANDQLLLYRGLKKAKKERGCTAKERISKMPPCAAGKRSSIYRGVTRAKHKRNFPGSADLSADVVYRTIIIEFMSACEWSDDIRHRWTGRYEAHLWDKSTWNQNQNKKGKQGAYDEEEAAARAYDLAALKYWGPGTLINFPVTDYTRDLEEMQNVSREEYLASLRRKSSGFSRGISKYRGLSSRWEPSFGRMPGPDYVNSINYGAGDDQATESEFVQSFCIERKIDLTSHIKWWGPNKTRTASAGSKSSEEDKNSCAGEVGSELKALGQTARPTEPYEMPCLGTLHGVKKAASKVSALSILSRSAAYKSLQEKALKLQEINNENDENENKNTVNKTDHGKVVETHTSHGGDPSERFGVAFGTSGGLPLQRNVFPLTPFLTAPLLSSYNTVDPLGDPIHWTSLVSVLPSGLSRTAECFTPSYLVNIVGRIRMAGSLRLDDIALLYAPRREGEDEDG 567
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 31292876 31303056 - CrPI670011_10g017090.1 Cre10g1709 511011
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cre10g1709 567 SUPERFAMILY DNA-binding domain 196 254 IPR016177 GO:0003677(InterPro)
Cre10g1709 567 Coils Coil 419 447 - -
Cre10g1709 567 MobiDBLite consensus disorder prediction 1 29 - -
Cre10g1709 567 Gene3D AP2/ERF domain 194 255 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre10g1709 567 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 107 367 - -
Cre10g1709 567 MobiDBLite consensus disorder prediction 350 370 - -
Cre10g1709 567 MobiDBLite consensus disorder prediction 1 23 - -
Cre10g1709 567 SMART rav1_2 196 259 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre10g1709 567 ProSiteProfiles AP2/ERF domain profile. 177 253 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre10g1709 Cre-Chr10:31292876 Cre11g1355 Cre-Chr11:15777955 1.40E-35 dispersed
Cre10g1709 Cre-Chr10:31292876 Cre05g2383 Cre-Chr5:35373934 1.30E-46 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54560 PF00847 AP2 1.90E-05 CL0081 Cre TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g1709 K09285 - csv:101206434 712.605