Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre10g1714 | ATGGCCGACGCCGACCAATTCCCTCGCCGGAAACCCCTTGGAAATAAGCGAGCCTCCGCAGCCAATAGAGACCCCGACTCCACCACTGCCACCGTCACCGCCCCGGCTCCTTGTGGCGCATGCAAGTTTCTCAGAAGAAAATGTGTCAATGGATGTATCTTTGCACCACATTTCGCCTCCGATCAAGGCGCCGCCCGATTCGCTGCCGTGCATAAGGTCTTTGGAGCTAGCAACGTGTCGAAGCTGCTGCTTCATATTCCGGTCAGCCGTCGAAATGACGCTGTTGTTACCATTTCTTATGAGGCTCAGGCCAGATTATCCGACCCTGTCTATGGATGTGTCTCTACTGTCCTTGCCTTACAACAACAGGTGGCATCTCTGCAGGCAGAGCTAGCCGCGGTTCAAGCTCAATTGATAAGCAGCAGGTTGGCATTTGCAGCTACGATTCAGAACTCGCAGCCATCCCAAGTCGGAGTGTTGCAGCCAGCTTACTCTAACAACTCCTCCATCTCCGTCTCCGCCTCTACCTCTGCTCATAATGCAATCAATTTGAGTAGTTTTGCTTCCAATTACGACCTTCCGACCGAGACTGCCCCATCTCCCCATCACCTAGAGCCTCTTCACCTCCCCCATCAACCGATCGAAGATGAGGAAGACGAGGAAAATAGCCAGTTGCCAGCCATCTTCGCCGATTAA | 696 | 53.3 | MADADQFPRRKPLGNKRASAANRDPDSTTATVTAPAPCGACKFLRRKCVNGCIFAPHFASDQGAARFAAVHKVFGASNVSKLLLHIPVSRRNDAVVTISYEAQARLSDPVYGCVSTVLALQQQVASLQAELAAVQAQLISSRLAFAATIQNSQPSQVGVLQPAYSNNSSISVSASTSAHNAINLSSFASNYDLPTETAPSPHHLEPLHLPHQPIEDEEDEENSQLPAIFAD | 231 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 31355825 | 31358102 | - | CrPI670011_10g017140.1 | Cre10g1714 | 511016 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre10g1714 | 231 | ProSiteProfiles | LOB domain profile. | 36 | 138 | IPR004883 | - | |
Cre10g1714 | 231 | PANTHER | LOB DOMAIN CONTAINING PROTEIN | 35 | 191 | - | GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER) | |
Cre10g1714 | 231 | Pfam | Lateral organ boundaries (LOB) domain | 37 | 135 | IPR004883 | - | |
Cre10g1714 | 231 | Coils | Coil | 117 | 137 | - | - | |
Cre10g1714 | 231 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre09g0763 | Cre-Chr9:7479801 | Cre10g1714 | Cre-Chr10:31355825 | 1.70E-35 | dispersed | |
Cre10g1714 | Cre-Chr10:31355825 | Cre11g1551 | Cre-Chr11:24820525 | 2.40E-23 | dispersed | |
Cre10g1714 | Cre-Chr10:31355825 | Cre06g0810 | Cre-Chr6:1446945 | 1.70E-37 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
54562 | PF03195 | LOB | 1.50E-37 | No_clan | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre10g1714 | - | - | - | 0.0 |