Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g1714 ATGGCCGACGCCGACCAATTCCCTCGCCGGAAACCCCTTGGAAATAAGCGAGCCTCCGCAGCCAATAGAGACCCCGACTCCACCACTGCCACCGTCACCGCCCCGGCTCCTTGTGGCGCATGCAAGTTTCTCAGAAGAAAATGTGTCAATGGATGTATCTTTGCACCACATTTCGCCTCCGATCAAGGCGCCGCCCGATTCGCTGCCGTGCATAAGGTCTTTGGAGCTAGCAACGTGTCGAAGCTGCTGCTTCATATTCCGGTCAGCCGTCGAAATGACGCTGTTGTTACCATTTCTTATGAGGCTCAGGCCAGATTATCCGACCCTGTCTATGGATGTGTCTCTACTGTCCTTGCCTTACAACAACAGGTGGCATCTCTGCAGGCAGAGCTAGCCGCGGTTCAAGCTCAATTGATAAGCAGCAGGTTGGCATTTGCAGCTACGATTCAGAACTCGCAGCCATCCCAAGTCGGAGTGTTGCAGCCAGCTTACTCTAACAACTCCTCCATCTCCGTCTCCGCCTCTACCTCTGCTCATAATGCAATCAATTTGAGTAGTTTTGCTTCCAATTACGACCTTCCGACCGAGACTGCCCCATCTCCCCATCACCTAGAGCCTCTTCACCTCCCCCATCAACCGATCGAAGATGAGGAAGACGAGGAAAATAGCCAGTTGCCAGCCATCTTCGCCGATTAA 696 53.3 MADADQFPRRKPLGNKRASAANRDPDSTTATVTAPAPCGACKFLRRKCVNGCIFAPHFASDQGAARFAAVHKVFGASNVSKLLLHIPVSRRNDAVVTISYEAQARLSDPVYGCVSTVLALQQQVASLQAELAAVQAQLISSRLAFAATIQNSQPSQVGVLQPAYSNNSSISVSASTSAHNAINLSSFASNYDLPTETAPSPHHLEPLHLPHQPIEDEEDEENSQLPAIFAD 231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 31355825 31358102 - CrPI670011_10g017140.1 Cre10g1714 511016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g1714 231 ProSiteProfiles LOB domain profile. 36 138 IPR004883 -
Cre10g1714 231 PANTHER LOB DOMAIN CONTAINING PROTEIN 35 191 - GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER)
Cre10g1714 231 Pfam Lateral organ boundaries (LOB) domain 37 135 IPR004883 -
Cre10g1714 231 Coils Coil 117 137 - -
Cre10g1714 231 MobiDBLite consensus disorder prediction 1 32 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre09g0763 Cre-Chr9:7479801 Cre10g1714 Cre-Chr10:31355825 1.70E-35 dispersed
Cre10g1714 Cre-Chr10:31355825 Cre11g1551 Cre-Chr11:24820525 2.40E-23 dispersed
Cre10g1714 Cre-Chr10:31355825 Cre06g0810 Cre-Chr6:1446945 1.70E-37 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54562 PF03195 LOB 1.50E-37 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g1714 - - - 0.0