Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g1736 ATGGTTATGGCTGACGATTCCCAATTCCATGTTCTTGCCGTCGATGATAGCCTCATAGATAGAAAACTCATCGAAAGGCTTCTCAAAACCTCCTCCTATCAAGTTACTACGGTTGATTCTGGTAGCAAGGCCTTGGAATTTCTAGGTCTGATTCAAGAACATCAACATACAAACTTCAAATCCCCTTCTCCTTCTCCTTCTTTTTCCTCCTCCAACAATCATCACCAGGAAGTGGAAGTGAATCTTATCATCACTGATTACTGTATGCCTGGAATGACTGGCTTCGATTTGCTCAAGAAAGTTAAGGAATCAACGTCGCTTAGAAACATACCAGTGGTGATAATGTCATCGGAAAACGTACCTTCGAGAATCAGCAGATGTTTGGAAGAAGGCGCGGAAGAGTTCTTCCTGAAGCCAGTTCGATTGTGCGATGTGAATAAACTGAAACCGCATATGATGAAGACGAAGTTGATGGAGGATCAAAATCAAGAAGAAGAAGAAACAACAGCAACAGAGATCGAATTGGAATCGGTAGAAAAAGAAGAAGAAGAAGAAGAGTTTGAGTTTGAGATGAGTAAGAAGAGAAAGGGAGGTGTGGATGAAGAAAGTGTGGAGACGGAGAGAAGAAGAAGAAGAAGAAGGTTCGACAACAATGGCGTCGCGACGCCGATCAAACACACACACACAAAAAGCAAAAAAACAAAGCCTTTCTTCATTGATCAATACAAAACCTTCTTCTTTACAACTCCCAAATCAAAATTCCCTTCTCCATTTTCCCTCAATTTCTTCCTCTTAATCAACCTTCCCTCCAATTTCTTCTCTCCTTCTTCATTCCGATTCAGCGCATAA 849 41.34 MVMADDSQFHVLAVDDSLIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLIQEHQHTNFKSPSPSPSFSSSNNHHQEVEVNLIITDYCMPGMTGFDLLKKVKESTSLRNIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLCDVNKLKPHMMKTKLMEDQNQEEEETTATEIELESVEKEEEEEEFEFEMSKKRKGGVDEESVETERRRRRRRFDNNGVATPIKHTHTKSKKTKPFFIDQYKTFFFTTPKSKFPSPFSLNFFLLINLPSNFFSPSSFRFSA 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 31659739 31667735 - CrPI670011_10g017360.1 Cre10g1736 511038
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g1736 282 Pfam Response regulator receiver domain 74 142 IPR001789 GO:0000160(InterPro)
Cre10g1736 282 SMART REC_2 9 148 IPR001789 GO:0000160(InterPro)
Cre10g1736 282 MobiDBLite consensus disorder prediction 158 214 - -
Cre10g1736 282 Gene3D - 10 232 - -
Cre10g1736 282 PANTHER TWO-COMPONENT RESPONSE REGULATOR 6 213 IPR045279 GO:0009736(InterPro)
Cre10g1736 282 CDD REC_typeA_ARR 11 148 - -
Cre10g1736 282 MobiDBLite consensus disorder prediction 187 214 - -
Cre10g1736 282 Coils Coil 161 181 - -
Cre10g1736 282 MobiDBLite consensus disorder prediction 164 186 - -
Cre10g1736 282 ProSiteProfiles Response regulatory domain profile. 10 153 IPR001789 GO:0000160(InterPro)
Cre10g1736 282 SUPERFAMILY CheY-like 8 165 IPR011006 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g0540 Cre-Chr4:21041581 Cre10g1736 Cre-Chr10:31659739 6.10E-55 dispersed
Cre06g2534 Cre-Chr6:32991425 Cre10g1736 Cre-Chr10:31659739 9.00E-39 dispersed
Cre07g0902 Cre-Chr7:8148361 Cre10g1736 Cre-Chr10:31659739 4.20E-40 dispersed
Cre09g1785 Cre-Chr9:36276213 Cre10g1736 Cre-Chr10:31659739 1.10E-51 dispersed
Cre10g1736 Cre-Chr10:31659739 Cre05g2664 Cre-Chr5:37620159 1.30E-39 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54565 PF00072 Response_reg 3.90E-13 CL0304 Cre TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g1736 K14492 - csv:101220810 303.523