Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g1750 ATGAGGAAAGAGGGAGGGTTTATGAAGAAAATGGGAAAGTCAATATGGTTCAAAGTTTTGGTGGGTTTTGTTGGTTTTGAGCTCATCGATGAGTTGGAAGCTGGGGAGTTGATAGCTGAAGTTTTGATAACAGTGAAGATTGGTGCAGACGATTTAAACAAAACGGTGAACGGGATGCCTAGCTTCGTTTCTTCGATGCCCACAGCCAATAATTCCATGGGTGCAGAGGGGAGCTCTATTCCTTCATCTCGGATTTCAGACTTTAGAACACTTGAGCAAACTCTTGGATTTCACATAGAAGATGTAGACCTTACTAGAAATCCTTTGTATAATCAGATAAAGTCCAGTAGTTCGACTCTGAACAACAACATCCAATTTGGTTCTTTAATTAAGCCACTTGCATCCACTGATGTAAATCTGCCAACTGCTGTCATGGGGTCTCGAACACTGCCATTACAGAAAGAGTCAAATCCAAATTTGGTTTCTACTTCTGGTGGTCCTCGTGAAAATTGGGGAGAGTCTAATATGGCAGATACCAGCACAAGAACTGATACCTCCACAGATGACACGGATGACAAAAGTCAAAGGCTTGACAAGGATCAAGGAAACTCACTTGCCGCATATGATTCTAGCAACAAATCAAAAGAAAAAACAGCAGATCAGAAGACCTTACGAAGGCTTGCTCAAAATCGCGAAGCTGCTAGAAAAAGCCGTTTAAGGAAAAAAGCATATGTGCAGCAGCTAGAAAGTAGCAGACTGAAGCTTACTCAACTTGAGCAAGAACTCCAGCGGGCCCGCCAGCAGGGTATATTTATTTCAAATTCTGGAGACCAAGCCCATTCAATGAGTGGGAATGGGGCCCTAGCATTCGACGTAGAATATTCACGTTGGTTAGAGGAGCATAACAGGCTGATGAATGAGCTTAGAGCTGCAGTAAATTCACATGCTGGTGACACTGAACTTCGTACTATTGTAGATAATGTGACTACACAGTTCGATGATATTTTCAGGTTGAAAGGCATTGCAGCCAAAGCTGATGTGTTCCACATCTTGTCAGGAATGTGGAAGACACCAGCAGAGCGGTGTTTCCTGTGGATTGGTGGCTTCCGTTCATCTGAGATCCTAAAGTTAGAGTTACCTTCTCGTAATGTTGTTCACCCTTTTGCCCGCCTACTTTTGCCACCTTTGAGCTCCACTCAGTCCTCCTCAGATGGTGACACCTCTGACTGTTCTTTCAAATTTTGGAAAGGCAACGGGAAAGATTCTTTGAGTTTTCCATGGAACAGTTGTGATGAATCTTTGAAAGCAACCTCACTCAAAACTGCAATTATGTTAATGCAGCTTCTTGTAAACCAATTAGAGCCTTTGGCTGAGCAGCAGCTAATGGGCATTTGCAACCTGCAACAATTATCACAACAGGCAGAAGATGCTCTCTCACAAGGAATGGATGCATTGCAGCAATCCTTGGCTGAAACATTGGCCAGTGCCACACCTGCAACGTCGGGATCGTCTGGGAATGTGGCAAATTATATGGGTCAAATGGCCATGGCAATGGGAAAGCTTGGAACTCTTGAAGGCTTCCTACGACAGGCTGATAATCTTCGTCAACAAACCCTTCAACAAATGCATCGCATATTGACAACCCGTCAATCAGCCCGTGCACTTCTTGCAATAAACGACTACTTCTCCCGTCTTAGAGCCCTCAGTTCTCTGTGGCTTGCACGGCCACGAGATTGA 1737 44.21 MRKEGGFMKKMGKSIWFKVLVGFVGFELIDELEAGELIAEVLITVKIGADDLNKTVNGMPSFVSSMPTANNSMGAEGSSIPSSRISDFRTLEQTLGFHIEDVDLTRNPLYNQIKSSSSTLNNNIQFGSLIKPLASTDVNLPTAVMGSRTLPLQKESNPNLVSTSGGPRENWGESNMADTSTRTDTSTDDTDDKSQRLDKDQGNSLAAYDSSNKSKEKTADQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISNSGDQAHSMSGNGALAFDVEYSRWLEEHNRLMNELRAAVNSHAGDTELRTIVDNVTTQFDDIFRLKGIAAKADVFHILSGMWKTPAERCFLWIGGFRSSEILKLELPSRNVVHPFARLLLPPLSSTQSSSDGDTSDCSFKFWKGNGKDSLSFPWNSCDESLKATSLKTAIMLMQLLVNQLEPLAEQQLMGICNLQQLSQQAEDALSQGMDALQQSLAETLASATPATSGSSGNVANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLWLARPRD 578
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 31911664 31920122 + CrPI670011_10g017500.1 Cre10g1750 511052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g1750 578 CDD bZIP_HBP1b-like 222 273 - -
Cre10g1750 578 MobiDBLite consensus disorder prediction 149 183 - -
Cre10g1750 578 SUPERFAMILY Leucine zipper domain 222 265 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre10g1750 578 Pfam Seed dormancy control 305 377 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Cre10g1750 578 Gene3D - 221 273 - -
Cre10g1750 578 Coils Coil 241 268 - -
Cre10g1750 578 PANTHER TRANSCRIPTION FACTOR TGA9 180 378 - -
Cre10g1750 578 Pfam bZIP transcription factor 221 262 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre10g1750 578 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 220 264 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre10g1750 578 MobiDBLite consensus disorder prediction 184 199 - -
Cre10g1750 578 ProSiteProfiles DOG1 domain profile. 287 575 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Cre10g1750 578 FunFam BZIP family transcription factor 221 270 - -
Cre10g1750 578 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 225 240 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre10g1750 578 SMART brlzneu 218 281 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre10g1750 578 MobiDBLite consensus disorder prediction 149 223 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g1009 Cre-Chr8:23189625 Cre10g1750 Cre-Chr10:31911664 2.00E-124 dispersed
Cre10g1750 Cre-Chr10:31911664 Cre10g1850 Cre-Chr10:33070315 3.30E-77 dispersed
Cre10g1750 Cre-Chr10:31911664 Cre01g1119 Cre-Chr1:20413933 1.40E-80 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54566 PF14144 DOG1 1.10E-28 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g1750 K14431 - csv:101219149 620.157