Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g1754 ATGGGAAAGAGTGAAGAAGAACAGCCGCTGCCGGTTGGAGTGAGCTCCTCTGAGCTTTCTGACCGGAATGTGGAGAGCAGATGCGGCGGCGGTGGGTGCTCTGGGATTCGTAGACTGATTGCGGTGAGATGTGTCTTCTTCCTGTTATTATCGGCGGCTGTGTTTCTTTCTGCTATTTTTTGGCTGCCACCGTTCCTTTCCGATGGAAATTGGCCGGATCGGCCTATTGATTCTGCTTATAGAGATCATGAAATAGTAGCAAGTTTTCATGCTTGGAAGCCAGTTCCTTTTATGGAAAACCATATTTTTGAGCTTGAGGATAACATTTTTGGAGAAATACCCGTACCATTTGTCAAGGTGGTTATCCTCTCACTACAATCATTAGGTGGACCAAACGTAACAAAAATTGTTTTTGCGGTAGATTCTGATGCAAAGTATTCAAAAATTCCCCCAACATCTCAAAGTTTAATCAAGGATACCTTTGAAACATTGGTTATAAATGAACCTCCTCTGAGATTGAATGCATCATTATTTGGCAATACATCCTTATTCGAGGTGTTGAAATTTCCTGGAGGAATAACTATTATTCCTCCTCAGAGTGCATTTCCTCTGCAGGCGGCACAGATCTATTTCAACTTCACATTAAATTATTCTATTCATCAAATTCAAGTGAATTTTGATGATCTTACCAGCCAGTTGAGGTCAGGATTACATCTATCTCCTTATGAGAATTTGTATGTTAGCCTATCGAACAAAAGAGGTTCAACAATACATCCCCCCACTATTGTCCAGTCATCTGTTCTGATGGCAATTGGGACTAACTCATCGAAACAAAGGCTAAAACAGTTGGCTCAAACCATCACAAATTCTCATTCAGGAAACCTTGGCCTGAACAACACTGTATTTGGTAAGGTCAAGCAGGTGCGTCTTTCATCAGTCCTAAACCACTCTCTTGGTGGTGGTGGCAGTGCTCGGTCACCTACACCTGCGCCTCTGCCTCATTCTCACCACCACCACCACCATCACCACCACCATCACCACCATCACCACCATTACCACCATCACCACCACCACCACAATCAGGATGCTGCATACTCACCTAGTCCTGGAACAGAGGAGCACAAACATGCACTGAAGAATGGGGTCTCATCTGCTCCCGAAGCTGGTTCATCTCCAGTGGAAAGTCCAACTGCAAATAAAAGAAACTATGAAGCTACTCCGCCTGCTTTTCAATATGGATATAAGAGGTCTTCAAGAAAAGTCAGAAAACAATCTCATTTAGGCCCTATTCCTTCTCGAAGCAGTCCTCCATTGTCACCATTCTTACGAGTAGGCCTGCCAGCACCTGTTTCTGATTCTATTTCTGCTTCAAGTCCACTGTCAGGTGTAGTTCTATCTAGTGTACAGTCTCCAAATACAGGCAGTGGACATGCAGAAAATTTTGAAAGAAGTCCCCCTTCAGTCTTACCACCTCAATTTTCTTCTTCTGTAGGTGTTCGTGTTTATACCATTCGATGGACACTTGCGCTATTTCTACTAGTATGTTCCTTCTTCTTCTCTGCCATGGCGATCACTATCGTTGACCATCAAGTTCCCTCCGATTCCCACAATTTGTTCGACGTAACTTTCGATTCCGAGGAGCCAATTCTCACTCTTCTCACCACTTCACCATCCATGGTAGATGATTGGATATCCGAAACCCTCGCCATTCGAACTCCACCTCTCATCGTCGGCCTCGACATCGAATGGCGCCCTAATAATCGGTCCTACGACAACCCCGTCGCCACCTTGCAACTCTGCATCGGCCGCCGCTGCCTGATTCTGCAACTGATCCACACACCTGAGATCCCTGAATCTCTGTTCGAGTTTCTGGAAAACGAATCCTTCACATTTGTAGGAGTGGGAATCGACGAGGATGCTGAAAAGCTCACCTGTGATTACGGATTGAAAGTGGGGAAGAGAGTGGATCTGAGGAATTTGGCTGAGAGTGTAACGGGAAGAGGAGATTTGAAGAATGCGGGATTGAAGAGATTGGGGAAAGAGGTTTTGGGGAAAGAGATTGAAAAGCCGAAGAGGGTGACGTTGAGTAGATGGGATCAACAGTGGCTTACTCTTAATCAGGTTAAGTATGCTTGTATTGATGCCTTTTTTTCGTTTGAGATTGGAAGGTTTTTGCAATCTTCATCCTATTAA 2193 44.69 MGKSEEEQPLPVGVSSSELSDRNVESRCGGGGCSGIRRLIAVRCVFFLLLSAAVFLSAIFWLPPFLSDGNWPDRPIDSAYRDHEIVASFHAWKPVPFMENHIFELEDNIFGEIPVPFVKVVILSLQSLGGPNVTKIVFAVDSDAKYSKIPPTSQSLIKDTFETLVINEPPLRLNASLFGNTSLFEVLKFPGGITIIPPQSAFPLQAAQIYFNFTLNYSIHQIQVNFDDLTSQLRSGLHLSPYENLYVSLSNKRGSTIHPPTIVQSSVLMAIGTNSSKQRLKQLAQTITNSHSGNLGLNNTVFGKVKQVRLSSVLNHSLGGGGSARSPTPAPLPHSHHHHHHHHHHHHHHHHYHHHHHHHNQDAAYSPSPGTEEHKHALKNGVSSAPEAGSSPVESPTANKRNYEATPPAFQYGYKRSSRKVRKQSHLGPIPSRSSPPLSPFLRVGLPAPVSDSISASSPLSGVVLSSVQSPNTGSGHAENFERSPPSVLPPQFSSSVGVRVYTIRWTLALFLLVCSFFFSAMAITIVDHQVPSDSHNLFDVTFDSEEPILTLLTTSPSMVDDWISETLAIRTPPLIVGLDIEWRPNNRSYDNPVATLQLCIGRRCLILQLIHTPEIPESLFEFLENESFTFVGVGIDEDAEKLTCDYGLKVGKRVDLRNLAESVTGRGDLKNAGLKRLGKEVLGKEIEKPKRVTLSRWDQQWLTLNQVKYACIDAFFSFEIGRFLQSSSY 730
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 31941546 31950185 + CrPI670011_10g017540.1 Cre10g1754 511056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g1754 730 SMART 35exoneu6 557 726 IPR002562 GO:0003676(InterPro)|GO:0006139(InterPro)|GO:0008408(InterPro)
Cre10g1754 730 MobiDBLite consensus disorder prediction 465 486 - -
Cre10g1754 730 MobiDBLite consensus disorder prediction 332 360 - -
Cre10g1754 730 MobiDBLite consensus disorder prediction 1 26 - -
Cre10g1754 730 Pfam 3'-5' exonuclease 560 726 IPR002562 GO:0003676(InterPro)|GO:0006139(InterPro)|GO:0008408(InterPro)
Cre10g1754 730 PANTHER F20B24.21 1 514 - -
Cre10g1754 730 CDD WRN_exo 554 723 - -
Cre10g1754 730 SUPERFAMILY Ribonuclease H-like 563 726 IPR012337 -
Cre10g1754 730 MobiDBLite consensus disorder prediction 316 434 - -
Cre10g1754 730 Gene3D - 539 727 IPR036397 GO:0003676(InterPro)
Cre10g1754 730 MobiDBLite consensus disorder prediction 465 480 - -
Cre10g1754 730 FunFam Werner Syndrome-like exonuclease 536 726 - -
Cre10g1754 730 MobiDBLite consensus disorder prediction 384 404 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g0627 Cre-Chr4:23668842 Cre10g1754 Cre-Chr10:31941546 3.50E-99 dispersed
Cre05g1155 Cre-Chr5:11106339 Cre10g1754 Cre-Chr10:31941546 4.20E-48 dispersed
Cre10g1754 Cre-Chr10:31941546 Cre10g1755 Cre-Chr10:31951788 8.30E-54 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g1754 - - - 0.0