Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g1758 ATGAGTTTGGAAATTGTGGATCCAAACACTTGCATCAGGGGCTGCTGCTCCAGCAAATCGATTCCTCTTCATCTTCAACCTTCCGCATTTACGTTGCTCTCCCCAATTGCCCGAGGGGCCGAGAGTATTGTGTATGAAGGAAGGTTGGATGGTAAAAAAGTTGCTGTAAAGAAGCCCACCTTGTCTACTTCTGAGGAATTGGACAAGTTTCATATGGAGCTCCAGTTGCTATGTGAACTAGATCATCCAGGCATAGTAAAACTGGTTGCAGCAAATGCGAGGCCACCTAACTACATGTTTTTCTTTGAATTCTACGAGTCTCCAAATCTTGCGGAGAAATTGCATGCCGAAGAATGGAATCCAAGTATCAATCAAGTGCTCATGATCACTATAGAGTTAGATTTGCATCCACACTTGGCTGATTTTGGTCTAGCAACACATCGGAAATATCTGAAAGAAATTTCTGCTGAAAATTGGAAGTCATCTGGCAAGCCAACAGGTGGTTTCTATAAGAAAAACATGGCCCACACTGTATTGGAAATGAATTATACAGAGCAGCTGCTTACGGCAGCTATTGTTTCAGATGGCTTGCGGCCAGCTCTTCCTACTGATGAGTCTGGCACACCATCTAGGTTGTTATCACTTATACGGAGGTGCTGGGATGCAAATCCTAGAAATAGACCATCTTTTTCTGATATAGTTATGGACTTGGAATCAATTTGGGAGAATAGAAAGGGTCTAGAATCTGTCACCCCTATACAACCTGACTTGTGTGGTAGGCTTAGTGATGCTAATGAACATGATTACGTGTATCGAGAAGATATTAACTGGTCAAATCAGGGAGAACATTGTTCTCAAAAATCATCTGATGCAGATAGGTGTGCTTTGAATGAGTGGTTTGATTTCTCAACTGACCATTCAGCATACCGCCCAACACTTACTTACGGATCCTTCTCCACCTGTGGGAGGAGGGAGACCATGGAGGACTCTCATTTCCTTTTGCGTCACTTCTGCAGTGAAGAGGACATCCATGTCTTTGGGATCTTTGATGGTCACAGAGGTGCAGCAGCTGCTGAGTTTTCAGCTCAAGCAATTCCTGGATTCTTGCGAACATCATTTTCCACAAGAAGTCCTGCAGATGCATTAACGGAAGCATTTGTAAAAACAGACATTGAGTTTAGAAAAGAACTCGAGTTCTTTCGCAAATCCAAGAAAGTTAAACAGAAAGATTGGCATCCTGGTTGCACTGCTGTTGTTGCTTTAGTTGTTAGAGACAGGCTTTTTGTTGCCAATGCTGGTGATTGCAGGACAATATTGTGTCGGGCTGGGAATCCCATTGTTTTAAGTAAGGATCATGTCGCTAGTTGTCTTGAGGAGAGAGAGCGTGTCATCAGTGCCGGAGGACAGGTCAAGTGGCAAGTTGATACATGGAGGGTTGGACCGGCTGCTCTTCAGGTCACTCGATCAATTGGCGACGATGATCTGAAGCCAGCCGTCATTGCAGAACCCGAGATAACGGAAACTGTTTTGACATCACAGGATGATTACCTGGTTATGGCTAGTGATGGATTGTGGGATGTCCTTAGCAACTCTGAGGTAGTTGGTATAATCAGGGACACTGTCAAAGATCCGGGAATGTGCTCGAAGCGACTTGCAACAGAAGCGGCAGCTCGGGGAAGCAACGATAACATCACGGTAATTGTTGTATTTTTACATCCAGTATCTACAGTAGAGAGAATATATTAA 1746 44.04 MSLEIVDPNTCIRGCCSSKSIPLHLQPSAFTLLSPIARGAESIVYEGRLDGKKVAVKKPTLSTSEELDKFHMELQLLCELDHPGIVKLVAANARPPNYMFFFEFYESPNLAEKLHAEEWNPSINQVLMITIELDLHPHLADFGLATHRKYLKEISAENWKSSGKPTGGFYKKNMAHTVLEMNYTEQLLTAAIVSDGLRPALPTDESGTPSRLLSLIRRCWDANPRNRPSFSDIVMDLESIWENRKGLESVTPIQPDLCGRLSDANEHDYVYREDINWSNQGEHCSQKSSDADRCALNEWFDFSTDHSAYRPTLTYGSFSTCGRRETMEDSHFLLRHFCSEEDIHVFGIFDGHRGAAAAEFSAQAIPGFLRTSFSTRSPADALTEAFVKTDIEFRKELEFFRKSKKVKQKDWHPGCTAVVALVVRDRLFVANAGDCRTILCRAGNPIVLSKDHVASCLEERERVISAGGQVKWQVDTWRVGPAALQVTRSIGDDDLKPAVIAEPEITETVLTSQDDYLVMASDGLWDVLSNSEVVGIIRDTVKDPGMCSKRLATEAAARGSNDNITVIVVFLHPVSTVERIY 581
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 31973331 31984363 - CrPI670011_10g017580.1 Cre10g1758 511060
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g1758 581 Gene3D - 304 576 IPR036457 -
Cre10g1758 581 Pfam Protein phosphatase 2C 315 564 IPR001932 -
Cre10g1758 581 SUPERFAMILY Protein kinase-like (PK-like) 24 256 IPR011009 -
Cre10g1758 581 Gene3D Transferase(Phosphotransferase) domain 1 131 254 - -
Cre10g1758 581 SMART PP2C_4 304 569 IPR001932 -
Cre10g1758 581 FunFam Leucine rich repeat protein phosphatase 2c domain containing protein 305 575 - -
Cre10g1758 581 SUPERFAMILY PP2C-like 306 573 IPR036457 -
Cre10g1758 581 Pfam Protein tyrosine and serine/threonine kinase 32 132 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre10g1758 581 Gene3D Transferase(Phosphotransferase) domain 1 27 130 - -
Cre10g1758 581 SMART PP2C_SIG_2 329 571 IPR001932 -
Cre10g1758 581 ProSiteProfiles PPM-type phosphatase domain profile. 314 571 IPR001932 -
Cre10g1758 581 PANTHER PROTEIN PHOSPHATASE 283 570 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cre10g1758 581 CDD PP2Cc 315 571 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre10g1758 Cre-Chr10:31973331 Cre11g1291 Cre-Chr11:11882183 4.50E-26 dispersed
Cre10g1758 Cre-Chr10:31973331 Cre09g0461 Cre-Chr9:4379641 1.80E-30 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64482 PF00481 PP2C 3.40E-67 CL0238 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g1758 - - - 0.0