Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g1770 ATGAGGGAAGATGATTCAAATTGGTTCTCAAAATGGGAACAACAACTTCCTTCTCCTGATGAATTGATGCCTCTTTCCCAAACCCTAATCACCCCTGATCTTGCTTTAGCATTTGATATCACAAACTCAAATCCTCCCATTAATAACAATTCTCATCCACCGCCGCCTCCGCCGCCGCCTCCGGTTCTCACTCAGCCGAGTTCTGCAGATTTTGGGGATTCAGGGGATTTAGGGTCTGGCGCCGGCGACGAACCTGCCAGAACCCTGAAACGGCCGCGGCTTGTCTGGACACCGCAGCTTCATAAGCGATTCGTTGACGCCGTTGCTCATTTGGGGATAAAAAATGCCGTCCCGAAAACCATAATGCAGTTGATGAGCGTCGATGGGTTAACTCGTGAGAACGTAGCTAGCCATTTGCAGAAATACCGTCTTTATTTGAAGCGTATGCAGGGGATTTCCGGCGGTAGTGGTGGCGGAGCTAGTGCCGGTGGTGGATTGCCTTCAGCCGCTTCAGATCCTGCCACCGATCATTTGTTTGCTAGTTCCCCTGTTCCGGCTCATTTTCTTCACTCTGCTCGGGGTAATTCCGACCATTTCTTGCCGTTTGTTCCCATCGGAGCTCTACAGCATCACCACCACCAGATGGCCGCCGCCGCTCAGTACCACCGGCAAGTGGCTCAGTTTGGGTCGCCGCCGAATGGGCAATTTGAGCATCCGTTTTTGGCTCGCCCTGTTCACCGGATTGGAGCTCCGGTGAGTACTCCGGCGACGAATTATAGCGAGGATTTGGATACGGGTAATGGAACAGGAGGGAGGAAGGTTCTTACTCTTTTCCCCACCGGAAATGATTAA 852 52.11 MREDDSNWFSKWEQQLPSPDELMPLSQTLITPDLALAFDITNSNPPINNNSHPPPPPPPPPVLTQPSSADFGDSGDLGSGAGDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISGGSGGGASAGGGLPSAASDPATDHLFASSPVPAHFLHSARGNSDHFLPFVPIGALQHHHHQMAAAAQYHRQVAQFGSPPNGQFEHPFLARPVHRIGAPVSTPATNYSEDLDTGNGTGGRKVLTLFPTGND 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 32074803 32075654 + CrPI670011_10g017700.1 Cre10g1770 511072
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g1770 283 FunFam Two-component response regulator 87 150 - -
Cre10g1770 283 MobiDBLite consensus disorder prediction 252 283 - -
Cre10g1770 283 MobiDBLite consensus disorder prediction 37 90 - -
Cre10g1770 283 Gene3D - 88 150 - -
Cre10g1770 283 MobiDBLite consensus disorder prediction 48 65 - -
Cre10g1770 283 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 96 147 IPR017930 -
Cre10g1770 283 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 4 231 IPR044841 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre10g1770 283 NCBIfam myb-like DNA-binding domain, SHAQKYF class 92 144 IPR006447 GO:0003677(InterPro)
Cre10g1770 283 SUPERFAMILY Homeodomain-like 88 148 IPR009057 -
Cre10g1770 283 MobiDBLite consensus disorder prediction 10 24 - -
Cre10g1770 283 MobiDBLite consensus disorder prediction 1 24 - -
Cre10g1770 283 Pfam Myb-like DNA-binding domain 94 143 IPR001005 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g0637 Cre-Chr4:23986529 Cre10g1770 Cre-Chr10:32074803 4.30E-105 dispersed
Cre09g0521 Cre-Chr9:4907524 Cre10g1770 Cre-Chr10:32074803 6.60E-11 dispersed
Cre10g1770 Cre-Chr10:32074803 Cre11g0834 Cre-Chr11:5529015 3.00E-15 dispersed
Cre10g1770 Cre-Chr10:32074803 Cre03g0444 Cre-Chr3:2838756 1.40E-36 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54568 PF00249 Myb_DNA-binding 2.00E-08 CL0123 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g1770 - - - 0.0