Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g1789 ATGGAGGTTTTACAGGCCCTCGATTCTCAGGTTCTCATCGGTTTAGCAGCCGCCCTGATTGCCATTGTTGCTGGTGCTGTTTTCCTCTTTTCCTCCAGAAAACCCGCATCCAGAGCCTGCTTGGATCCTGAGAAGTTTAAGGAGTTTAAGCTTGTTAAGCGTACTAAGCTGAGCCACAATGTGGCGAAGTTCACTTTTATACTTCCCAAGCCCGATTCAATTCTTGGTCTTCCTATTGGACAACATTTAAGTTGCAGGGGGAAGGATGGCCAAGGTGAAGAAGTTATTAAATCTTACACCCCAACTACTTTGGACTCTGATGTTGGATATTTTGAACTAGTCATAAAGATGTATCCCCAAGGCAGGATGTCACATCATTTTCGAGAAATGCGCATTGGGGACTATCTTGCTGTAAAGGGACCAAAGGGACGTTTCAAGTACCAACCTGGTCAAGTTCATGCATTTGGGATGCTTGCTGGAGGCTCTGGCATTACACCTATGTACCAAGTTGCTCGGGCTATATTAGAGAACCCGAATGACAAAACAAAGGTTCACCTTATTTATGCCAATGTTACATTAGAAGATATTCTATTGAAGGAGGAATTGGATCTTCTTGCCAAAAGATACCCTGATCGCTTCAAAATCTACTATGTGTTGAACCAGCCTCCTGAAGTTTGGGATGGCGGCGTTGGCTTTGTGTCCAAGGAAATGATCAAAGCACATTGTCCTGCACCAGCTGCTGACATTAAGATTTTACGGTGCGGTCCGCCCCCGATGAACAAGGCCATGGGTGACCACCTTGATGCTCTTGGATATTCAGCTGAAATGCAGTTTCAATTCTAA 843 44.84 MEVLQALDSQVLIGLAAALIAIVAGAVFLFSSRKPASRACLDPEKFKEFKLVKRTKLSHNVAKFTFILPKPDSILGLPIGQHLSCRGKDGQGEEVIKSYTPTTLDSDVGYFELVIKMYPQGRMSHHFREMRIGDYLAVKGPKGRFKYQPGQVHAFGMLAGGSGITPMYQVARAILENPNDKTKVHLIYANVTLEDILLKEELDLLAKRYPDRFKIYYVLNQPPEVWDGGVGFVSKEMIKAHCPAPAADIKILRCGPPPMNKAMGDHLDALGYSAEMQFQF 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 32314845 32319221 + CrPI670011_10g017890.1 Cre10g1789 511091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g1789 280 SUPERFAMILY Riboflavin synthase domain-like 41 149 IPR017938 -
Cre10g1789 280 Pfam Oxidoreductase NAD-binding domain 157 263 IPR001433 GO:0016491(InterPro)
Cre10g1789 280 Pfam Oxidoreductase FAD-binding domain 49 147 IPR008333 -
Cre10g1789 280 FunFam NADH-cytochrome b5 reductase 138 280 - -
Cre10g1789 280 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 194 205 IPR001709 GO:0016491(InterPro)
Cre10g1789 280 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 156 175 IPR001709 GO:0016491(InterPro)
Cre10g1789 280 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 250 258 IPR001709 GO:0016491(InterPro)
Cre10g1789 280 FunFam NADH-cytochrome b5 reductase 39 138 - -
Cre10g1789 280 PRINTS Cytochrome B5 reductase signature 250 258 - -
Cre10g1789 280 PRINTS Cytochrome B5 reductase signature 194 205 - -
Cre10g1789 280 PRINTS Cytochrome B5 reductase signature 97 104 - -
Cre10g1789 280 PRINTS Cytochrome B5 reductase signature 133 147 - -
Cre10g1789 280 PRINTS Cytochrome B5 reductase signature 156 175 - -
Cre10g1789 280 PRINTS Cytochrome B5 reductase signature 75 86 - -
Cre10g1789 280 CDD cyt_b5_reduct_like 49 280 - -
Cre10g1789 280 PANTHER NADH-CYTOCHROME B5 REDUCTASE 19 280 IPR001834 GO:0004128(PANTHER)|GO:0016491(InterPro)|GO:0022900(PANTHER)
Cre10g1789 280 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 44 148 IPR017927 GO:0016491(InterPro)
Cre10g1789 280 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 136 275 IPR039261 -
Cre10g1789 280 Gene3D Translation factors 36 138 - -
Cre10g1789 280 Gene3D - 139 280 IPR039261 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g0607 Cre-Chr4:23386556 Cre10g1789 Cre-Chr10:32314845 4.80E-135 dispersed
Cre10g1789 Cre-Chr10:32314845 Cre11g0774 Cre-Chr11:4945351 5.10E-52 dispersed
Cre10g1789 Cre-Chr10:32314845 Cre03g1222 Cre-Chr3:13443942 7.90E-45 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g1789 K00326 - csv:101212931 529.635