Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g1828 ATGGGTGCGGTTAAATTATTTCCAAGGCTTCCACTTCCTCTGAGCACCCTCATAAATGAATATTACTCACAAAAACATTGGGGTTGGAGATGGAGGAAGAACAAGCTCTCTTCTTCTTCGTTCTCTCTACTCGCAGTTTCTCACTCTCCAGAGTCAAACACTCTCTTCCAAGCTCTAGATCGATCTCTCTCACTCCTTGAATCATCATTGACTTCCATTTTCTCCCTAATTTTTGCTCGCATTTCTCTCAATGAAGGAAGCATGTTTTGTGCCATGAATAACTTAACTGTGGAGACGGAAGATGTCTTTTCCAGCTTGCTTGAGCTTGCTGCGAATGATGACATTGATGCCTTCAAGAGATCAATTGAGCGCGACCCTTCTGGTATTGATGAAATTGGTTTATGGTATGGCCGCTTACGTGGCTCGAAGCAAATGACTAATGAGCAGAGAACTCCTTTAATGGTTGCTGCTACTTATGGTAGCACTGAGGTTCTGAAGCTTATTCTTTCTCTTTCTTGTGCTGATGTAAATCGCGCCGTCGGTCTTGACAGAAGCACTGCCCTTCATTGTGCAGCCTCAGGCGGGGCTGCAAATGCTGTAGATATTGTGAAGCGGCTCTTAGCTGCTGGTGCTGACCCTAATATGGTTGATGGGAATGGACATCGACCTGTCGATGTGATCATTGCGCCCTTAAGGCATGGCGAGCTTAAATCAACCCTTACAGAACTTCTTAAGACAAACGGTTTGTCTGGTGATGGAAATCTTGATGTTTTAACAGGTGCTAGAAATTCACATTCTCCTCGCCCTTCATCTCCTCTGAATGCCCCCTCATCAGCATCAGAGTTAGTTTCTTCTCCAACAAAGTCGAAACTAAGTGAGTTTCCAATGTTTTCTGCATCTGAGAAGAAAGAATACCCTGTTGATCTTTCTCTTCCAGACATCAAGAATAGTATCTACTCAACTGATGAATTCCGTATGTATTCGTTCAAGGTTCGACCCTGCTCACGTGCTTACTCTCATGATTGGACTGAGTGTCCCTTTGTCCACCCTGGAGAAAATGCCAGGAGGAGGGATCCAAGAAAGTTCCATTATAGCTGTGTACCCTGTCCTGATTTTCGGAAGGGTGCTTGCAGACGAGGAGATATGTGCGAATATGCTCATGGGGTGTTCGAGTGCTGGCTGCACCCAGCACAATATCGAACCCGCCTTTGCAAAGATGGCACAAATTGCTCAAGAAGAGTCTGCTTTTTTGCACACACTACTGAGGAACTGCGCCCTCTGTATGTTTCGACTGGCTCTGCTGTTCCCTCACCACGTTCTTGCACTTCCGGGGCTTCTGCCATGGATTATGCTACAGTCATGAACCTTCTACCTGGTTCTCCATCTTCGGTCCCTGTGATGTCTCCATCACCGTTCACTCCTCCGATGTCTCCATCTGCCAATGGCATGTCTCACTCGTCCGTGCCTTGGCCCCAACCGAATGTACCTGCCTTGCATCTTCCAGGAAGCAATATTCAATCCAGCCGCCTAAGATCTTCTTTGAGTGCAAGAGACATGCCTGTAGAGGATTTTGATTATCTGAGTGATTTTGATATGCAACAACAGCAGCTGCTTAACGACTTGAATTGTCTTTCTCAACCACCATTGAGTTCAAATTCATTGAACCGTTCTGGTCGGCTGAAAACTATGACCCCTTCGAATCTCGATGATCTCTTCTCTGCTGAGAGTTCATCTCCCAGATACTCTGATCAAGCTCTGGCTTCAGCTGTTTTCTCCCCTACACACAAATCAGCAGTTATCAATCAATTTCAGCAACAACAGACTATGTTGTCACCAATCAATACAAATTTCTCTCCTAAAAATGTTGATCACCCTCTATTGCAGGCCTCTTTCGGTGTTCCGTCATCTGGGAGGATGTCTCCACGAAATCTGGAACCCATCTCACCAGTCGGCTCTCGCTTGTCCATGTTAGCTCAAAGAGAGAAACAGCAGTTTCGCAGCCTCAGCTCGCGTGAACTCGGTGCTAATTCTGCCTCTATTGTTGGTTCTCCTGCAAATTCTTGGTCCAAATGGGGACCTTCAAATGGAAGACCTGATTGGGCAGTCAATGCGGATGAAATGGGTAAGCTTCGGCGATCATCGTCTTTTGAGCTCGGGAACAATGGAGAAGAGCCAGATTTATCATGGGTTCAATCACTTGTGAAAGAATCTCCAACTGACATAAAAGAAAAGCAGGCTCATCCCAATTTGGGTGGCGATAGTTTTGTATCTTCTGGTGAGAGTTCTAACATGAACTCGCAAATGGAGGCAGTCGATCATGCTGCATTAGGAGCATGGCTGGAACAAATGCAGCTTGATCATCTCGTCGCGCAACAGAACTGA 2382 46.01 MGAVKLFPRLPLPLSTLINEYYSQKHWGWRWRKNKLSSSSFSLLAVSHSPESNTLFQALDRSLSLLESSLTSIFSLIFARISLNEGSMFCAMNNLTVETEDVFSSLLELAANDDIDAFKRSIERDPSGIDEIGLWYGRLRGSKQMTNEQRTPLMVAATYGSTEVLKLILSLSCADVNRAVGLDRSTALHCAASGGAANAVDIVKRLLAAGADPNMVDGNGHRPVDVIIAPLRHGELKSTLTELLKTNGLSGDGNLDVLTGARNSHSPRPSSPLNAPSSASELVSSPTKSKLSEFPMFSASEKKEYPVDLSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTNCSRRVCFFAHTTEELRPLYVSTGSAVPSPRSCTSGASAMDYATVMNLLPGSPSSVPVMSPSPFTPPMSPSANGMSHSSVPWPQPNVPALHLPGSNIQSSRLRSSLSARDMPVEDFDYLSDFDMQQQQLLNDLNCLSQPPLSSNSLNRSGRLKTMTPSNLDDLFSAESSSPRYSDQALASAVFSPTHKSAVINQFQQQQTMLSPINTNFSPKNVDHPLLQASFGVPSSGRMSPRNLEPISPVGSRLSMLAQREKQQFRSLSSRELGANSASIVGSPANSWSKWGPSNGRPDWAVNADEMGKLRRSSSFELGNNGEEPDLSWVQSLVKESPTDIKEKQAHPNLGGDSFVSSGESSNMNSQMEAVDHAALGAWLEQMQLDHLVAQQN 793
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 32838409 32842430 + CrPI670011_10g018280.1 Cre10g1828 511130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g1828 793 MobiDBLite consensus disorder prediction 257 286 - -
Cre10g1828 793 SMART c3hfinal6 398 421 IPR000571 GO:0046872(InterPro)
Cre10g1828 793 SMART c3hfinal6 363 389 IPR000571 GO:0046872(InterPro)
Cre10g1828 793 Gene3D - 363 426 - -
Cre10g1828 793 FunFam Zinc finger CCCH domain-containing protein 66 321 389 - -
Cre10g1828 793 PANTHER UNKEMPT FAMILY MEMBER 142 738 IPR045234 -
Cre10g1828 793 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 367 388 IPR000571 GO:0046872(InterPro)
Cre10g1828 793 ProSiteProfiles Zinc finger C3H1-type profile. 368 390 IPR000571 GO:0046872(InterPro)
Cre10g1828 793 Pfam Ankyrin repeats (3 copies) 145 217 IPR002110 GO:0005515(InterPro)
Cre10g1828 793 SMART ANK_2a 148 178 IPR002110 GO:0005515(InterPro)
Cre10g1828 793 SMART ANK_2a 183 215 IPR002110 GO:0005515(InterPro)
Cre10g1828 793 MobiDBLite consensus disorder prediction 543 562 - -
Cre10g1828 793 SUPERFAMILY Ankyrin repeat 97 228 IPR036770 -
Cre10g1828 793 MobiDBLite consensus disorder prediction 738 762 - -
Cre10g1828 793 ProSiteProfiles Ankyrin repeat region circular profile. 183 217 - -
Cre10g1828 793 MobiDBLite consensus disorder prediction 255 286 - -
Cre10g1828 793 ProSiteProfiles Ankyrin repeat profile. 183 218 IPR002110 GO:0005515(InterPro)
Cre10g1828 793 Gene3D - 100 247 IPR036770 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2259 Cre-Chr2:36180932 Cre10g1828 Cre-Chr10:32838409 1.70E-136 dispersed
Cre10g1386 Cre-Chr10:27549866 Cre10g1828 Cre-Chr10:32838409 3.50E-243 dispersed
Cre10g1828 Cre-Chr10:32838409 Cre11g0685 Cre-Chr11:3909882 2.10E-50 dispersed
Cre10g1828 Cre-Chr10:32838409 Cre07g0777 Cre-Chr7:6353613 4.00E-134 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54575 PF12796 Ank_2 2.30E-09 CL0465 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g1828 - - - 0.0