Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre10g1839 | ATGGATGACCCTTCCACTAACTTCTTCTTCACAAATCTCTTCAAATTCAACTCTCCTACCACTACCAATTTCCCCCACCACCACCACCCTTCTTCTTCTTCTTCTTCTTCAAACCCTTTTCCTCCTCCTCCTCCTCCTCCTCCTCCCAATTTCTTCCCCACTTTCCACCACCACCACCACGCTCCGCCGCCATCCTCTCCACCGCTCCGCCAAGCTCTCCCTCTCCTTAGCCTTAGCCCCACACGATCAGCACAAGAGAAAAACAACAAGGAAGAGGAAAAGGAAGAAACTTTAATGAGAGTTGCACTTCATATAGGGTTACCAAGCCCTAGGGCTGAAGAAGAAGAAGGAGAAGAAGAAGAAGAAGAAGAAGAAGATCAAGAATTAGAAGAAGAAGAAGAATTAGAAGATCAAGAAGAAGAAGAAGAAGTAGCAATTTCAGGATTGTGTTTGAGTAATAGTAGACTTAACAAAGGACAATATTGGATCCCAACTCCTTCACAAATCCTCATTGGACCTACTCAATTCTCTTGTCCTGTTTGTTACAAAACCTTCAATAGATATAACAACATGCAGATGCACATGTGGGGGCATGGGTCACAATACAGGAGAGGACCAGAATCGTTAAGAGGAACACAACCAACAGGGATGTTAAGGCTGCCATGTTATTGCTGCTCACCAGGTTGCCGCAACAACATTGACCATCCAAGAGCAAAGCCTTTAAAGGATTTCAGAACTCTTCAAACTCATTACAAACGCAAGCATGGAATCAAGCCTTTCATGTGTAGGAAATGTGGGAAAGCCTTTGCTGTTAGAGGAGATTGGAGAACTCATGAGAAGAATTGTGGAAAGCTTTGGTATTGCATTTGTGGATCTGATTTTAAGCACAAAAGATCTCTCAAAGACCACATCAAAGCCTTTGGAAATGGCCATGCTGCTTATAATCATTCTAATAATAACGTTAATAACAATAATTCTGATCAACATCGTCGTCATCATCATCGGCATCATCGTCTTCATGGGTTCGATGAAGAGGATGACCATGCTTATTCTGAAGTTGAGCAAGATCATGATTGA | 1077 | 42.62 | MDDPSTNFFFTNLFKFNSPTTTNFPHHHHPSSSSSSSNPFPPPPPPPPPNFFPTFHHHHHAPPPSSPPLRQALPLLSLSPTRSAQEKNNKEEEKEETLMRVALHIGLPSPRAEEEEGEEEEEEEEDQELEEEEELEDQEEEEEVAISGLCLSNSRLNKGQYWIPTPSQILIGPTQFSCPVCYKTFNRYNNMQMHMWGHGSQYRRGPESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAYNHSNNNVNNNNSDQHRRHHHRHHRLHGFDEEDDHAYSEVEQDHD | 358 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 32963284 | 32965958 | + | CrPI670011_10g018390.1 | Cre10g1839 | 511141 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre10g1839 | 358 | MobiDBLite | consensus disorder prediction | 19 | 72 | - | - | |
Cre10g1839 | 358 | MobiDBLite | consensus disorder prediction | 19 | 35 | - | - | |
Cre10g1839 | 358 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 178 | 198 | IPR013087 | - | |
Cre10g1839 | 358 | MobiDBLite | consensus disorder prediction | 311 | 358 | - | - | |
Cre10g1839 | 358 | MobiDBLite | consensus disorder prediction | 36 | 53 | - | - | |
Cre10g1839 | 358 | FunFam | zinc finger protein WIP2-like | 175 | 198 | - | - | |
Cre10g1839 | 358 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 176 | 203 | IPR013087 | - | |
Cre10g1839 | 358 | MobiDBLite | consensus disorder prediction | 113 | 144 | - | - | |
Cre10g1839 | 358 | SMART | c2h2final6 | 260 | 280 | IPR013087 | - | |
Cre10g1839 | 358 | SMART | c2h2final6 | 176 | 198 | IPR013087 | - | |
Cre10g1839 | 358 | SUPERFAMILY | beta-beta-alpha zinc fingers | 242 | 280 | IPR036236 | - | |
Cre10g1839 | 358 | MobiDBLite | consensus disorder prediction | 339 | 358 | - | - | |
Cre10g1839 | 358 | MobiDBLite | consensus disorder prediction | 105 | 145 | - | - | |
Cre10g1839 | 358 | PANTHER | ZINC FINGER PROTEIN WIP2 | 25 | 331 | IPR043584 | GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(PANTHER)|GO:0010468(InterPro)|GO:0048856(PANTHER) | |
Cre10g1839 | 358 | FunFam | Zinc finger protein WIP2 | 229 | 311 | - | - | |
Cre10g1839 | 358 | Gene3D | Classic Zinc Finger | 175 | 198 | - | - | |
Cre10g1839 | 358 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 259 | 283 | - | - | |
Cre10g1839 | 358 | SUPERFAMILY | beta-beta-alpha zinc fingers | 172 | 198 | IPR036236 | - | |
Cre10g1839 | 358 | Gene3D | Classic Zinc Finger | 237 | 314 | - | - | |
Cre10g1839 | 358 | Coils | Coil | 111 | 145 | - | - | |
Cre10g1839 | 358 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 260 | 280 | IPR013087 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre01g1132 | Cre-Chr1:21429134 | Cre10g1839 | Cre-Chr10:32963284 | 8.00E-84 | dispersed | |
Cre03g1283 | Cre-Chr3:20164915 | Cre10g1839 | Cre-Chr10:32963284 | 1.00E-84 | dispersed | |
Cre04g0143 | Cre-Chr4:3703774 | Cre10g1839 | Cre-Chr10:32963284 | 7.00E-101 | dispersed | |
Cre09g0400 | Cre-Chr9:3942788 | Cre10g1839 | Cre-Chr10:32963284 | 1.10E-87 | dispersed | |
Cre10g1839 | Cre-Chr10:32963284 | Cre02g2631 | Cre-Chr2:39577417 | 1.80E-94 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
54578 | None | None | None | None | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre10g1839 | - | - | - | 0.0 |