Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g1839 ATGGATGACCCTTCCACTAACTTCTTCTTCACAAATCTCTTCAAATTCAACTCTCCTACCACTACCAATTTCCCCCACCACCACCACCCTTCTTCTTCTTCTTCTTCTTCAAACCCTTTTCCTCCTCCTCCTCCTCCTCCTCCTCCCAATTTCTTCCCCACTTTCCACCACCACCACCACGCTCCGCCGCCATCCTCTCCACCGCTCCGCCAAGCTCTCCCTCTCCTTAGCCTTAGCCCCACACGATCAGCACAAGAGAAAAACAACAAGGAAGAGGAAAAGGAAGAAACTTTAATGAGAGTTGCACTTCATATAGGGTTACCAAGCCCTAGGGCTGAAGAAGAAGAAGGAGAAGAAGAAGAAGAAGAAGAAGAAGATCAAGAATTAGAAGAAGAAGAAGAATTAGAAGATCAAGAAGAAGAAGAAGAAGTAGCAATTTCAGGATTGTGTTTGAGTAATAGTAGACTTAACAAAGGACAATATTGGATCCCAACTCCTTCACAAATCCTCATTGGACCTACTCAATTCTCTTGTCCTGTTTGTTACAAAACCTTCAATAGATATAACAACATGCAGATGCACATGTGGGGGCATGGGTCACAATACAGGAGAGGACCAGAATCGTTAAGAGGAACACAACCAACAGGGATGTTAAGGCTGCCATGTTATTGCTGCTCACCAGGTTGCCGCAACAACATTGACCATCCAAGAGCAAAGCCTTTAAAGGATTTCAGAACTCTTCAAACTCATTACAAACGCAAGCATGGAATCAAGCCTTTCATGTGTAGGAAATGTGGGAAAGCCTTTGCTGTTAGAGGAGATTGGAGAACTCATGAGAAGAATTGTGGAAAGCTTTGGTATTGCATTTGTGGATCTGATTTTAAGCACAAAAGATCTCTCAAAGACCACATCAAAGCCTTTGGAAATGGCCATGCTGCTTATAATCATTCTAATAATAACGTTAATAACAATAATTCTGATCAACATCGTCGTCATCATCATCGGCATCATCGTCTTCATGGGTTCGATGAAGAGGATGACCATGCTTATTCTGAAGTTGAGCAAGATCATGATTGA 1077 42.62 MDDPSTNFFFTNLFKFNSPTTTNFPHHHHPSSSSSSSNPFPPPPPPPPPNFFPTFHHHHHAPPPSSPPLRQALPLLSLSPTRSAQEKNNKEEEKEETLMRVALHIGLPSPRAEEEEGEEEEEEEEDQELEEEEELEDQEEEEEVAISGLCLSNSRLNKGQYWIPTPSQILIGPTQFSCPVCYKTFNRYNNMQMHMWGHGSQYRRGPESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAYNHSNNNVNNNNSDQHRRHHHRHHRLHGFDEEDDHAYSEVEQDHD 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 32963284 32965958 + CrPI670011_10g018390.1 Cre10g1839 511141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g1839 358 MobiDBLite consensus disorder prediction 19 72 - -
Cre10g1839 358 MobiDBLite consensus disorder prediction 19 35 - -
Cre10g1839 358 ProSitePatterns Zinc finger C2H2 type domain signature. 178 198 IPR013087 -
Cre10g1839 358 MobiDBLite consensus disorder prediction 311 358 - -
Cre10g1839 358 MobiDBLite consensus disorder prediction 36 53 - -
Cre10g1839 358 FunFam zinc finger protein WIP2-like 175 198 - -
Cre10g1839 358 ProSiteProfiles Zinc finger C2H2 type domain profile. 176 203 IPR013087 -
Cre10g1839 358 MobiDBLite consensus disorder prediction 113 144 - -
Cre10g1839 358 SMART c2h2final6 260 280 IPR013087 -
Cre10g1839 358 SMART c2h2final6 176 198 IPR013087 -
Cre10g1839 358 SUPERFAMILY beta-beta-alpha zinc fingers 242 280 IPR036236 -
Cre10g1839 358 MobiDBLite consensus disorder prediction 339 358 - -
Cre10g1839 358 MobiDBLite consensus disorder prediction 105 145 - -
Cre10g1839 358 PANTHER ZINC FINGER PROTEIN WIP2 25 331 IPR043584 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(PANTHER)|GO:0010468(InterPro)|GO:0048856(PANTHER)
Cre10g1839 358 FunFam Zinc finger protein WIP2 229 311 - -
Cre10g1839 358 Gene3D Classic Zinc Finger 175 198 - -
Cre10g1839 358 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 259 283 - -
Cre10g1839 358 SUPERFAMILY beta-beta-alpha zinc fingers 172 198 IPR036236 -
Cre10g1839 358 Gene3D Classic Zinc Finger 237 314 - -
Cre10g1839 358 Coils Coil 111 145 - -
Cre10g1839 358 ProSiteProfiles Zinc finger C2H2 type domain profile. 260 280 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1132 Cre-Chr1:21429134 Cre10g1839 Cre-Chr10:32963284 8.00E-84 dispersed
Cre03g1283 Cre-Chr3:20164915 Cre10g1839 Cre-Chr10:32963284 1.00E-84 dispersed
Cre04g0143 Cre-Chr4:3703774 Cre10g1839 Cre-Chr10:32963284 7.00E-101 dispersed
Cre09g0400 Cre-Chr9:3942788 Cre10g1839 Cre-Chr10:32963284 1.10E-87 dispersed
Cre10g1839 Cre-Chr10:32963284 Cre02g2631 Cre-Chr2:39577417 1.80E-94 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54578 None None None None Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g1839 - - - 0.0