Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g1844 ATGGAGATTAAAGTAGGGACTGTAGTTGGATCCAGTCCAATCGGGCGTCAATCGGATGATACTGGACTTGAGTCGCTTCAATTCTGCGAAGAAATTCAGGGGTTGATGACGATTCCGGCGGAAAATGCTAGCTCCTTCACGGCACTTCTGGAACTTCCGGCGACGCAGGCTTTAGAGCTACTCCACTCGCCGGATTCCGGCGGTGGCGCCACGGCGGCGGTTGTGAACGATGATTCCGTTCAACACTGTATCAAAGACGTTCCGAAACCCTACTTCAGTGCCTTCAATTGCAATTTGACCTTCCCGACGAACTCGGCTCTAATTGAACGCGCTGCCAAGCTCTCGGTCTTGGCCGAAGAGCATTCGCCGGAGACGACTAGTTCAGTGCCGTTGAATTCGAGTGTCAATTTGGAGAAGGTGAAGAACGAGCCCACCACTGAAACCGATTCGAACCCTAATCCCTTGCAGACTTTAATCTCCGATCCGACGGTGGAGAACACGAACCAGAGATCGGCGAAGAGGAAGGAGCGCGAGAAAAAGGGAAAAGGGTCAACAAAGAAGAGCAAGAACGAAAGCAACGAGGATGCCGAAAAGCTTCCTTATGTTCATGTCCGAGCTCGCCGTGGTCAAGCGACAGACAGCCATAGCCTAGCAGAACGAGCGAGGAGAGAGAAAATCAATGCTCGGATGAAGCTACTTCAAGAACTGGTCCCTGGCTGCAATAAGATCTCAGGCACAGCCCTAGTGTTGGATGAAATCATCAACCATGTACAATCACTGCAGCGTCAAGTGGAGTTCTTGTCAATGAGGCTTGCAGCAGTTAACCCCAGAGTTGATTTCAACATTGATAGCATATTGGCTGCAGAAAACGAACCCGTACTCGAAAGCTCATTTCCGACGATGGTAACGCCATTGATGTGGCCAGAAATCCCAGTAAGTGGAACAAGACAACAATATCAACCCCAATGGCATTTTGATGGTTCAGTTAACCAGCAAGCTTGGGCGAGGGATGAACATAATCATCATAATTTCAGCACTCCTGAAAACTCTCTTTTAAGTTATGATTCTTCAGCAAATTCAGCATCTCTGCACTCAAATCAATTGAAGATGGAGCTGTGA 1119 48.79 MEIKVGTVVGSSPIGRQSDDTGLESLQFCEEIQGLMTIPAENASSFTALLELPATQALELLHSPDSGGGATAAVVNDDSVQHCIKDVPKPYFSAFNCNLTFPTNSALIERAAKLSVLAEEHSPETTSSVPLNSSVNLEKVKNEPTTETDSNPNPLQTLISDPTVENTNQRSAKRKEREKKGKGSTKKSKNESNEDAEKLPYVHVRARRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRVDFNIDSILAAENEPVLESSFPTMVTPLMWPEIPVSGTRQQYQPQWHFDGSVNQQAWARDEHNHHNFSTPENSLLSYDSSANSASLHSNQLKMEL 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33003441 33007841 - CrPI670011_10g018440.1 Cre10g1844 511146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g1844 372 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 210 260 IPR011598 GO:0046983(InterPro)
Cre10g1844 372 MobiDBLite consensus disorder prediction 120 167 - -
Cre10g1844 372 MobiDBLite consensus disorder prediction 183 201 - -
Cre10g1844 372 SMART finulus 216 266 IPR011598 GO:0046983(InterPro)
Cre10g1844 372 Coils Coil 250 270 - -
Cre10g1844 372 Gene3D - 207 280 IPR036638 GO:0046983(InterPro)
Cre10g1844 372 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 208 279 IPR036638 GO:0046983(InterPro)
Cre10g1844 372 MobiDBLite consensus disorder prediction 120 201 - -
Cre10g1844 372 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 118 332 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Cre10g1844 372 CDD bHLH_AtBPE_like 200 285 - -
Cre10g1844 372 Pfam Helix-loop-helix DNA-binding domain 214 261 IPR011598 GO:0046983(InterPro)
Cre10g1844 372 FunFam transcription factor bHLH48-like isoform X1 207 279 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre09g1800 Cre-Chr9:36444904 Cre10g1844 Cre-Chr10:33003441 2.40E-34 dispersed
Cre10g1844 Cre-Chr10:33003441 Cre11g0923 Cre-Chr11:6485577 2.40E-33 dispersed
Cre10g1844 Cre-Chr10:33003441 Cre02g0851 Cre-Chr2:5344030 9.90E-35 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54579 PF00010 HLH 1.40E-05 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g1844 - - - 0.0