Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre10g1850 ATGGCTTCTTCCAATATTAAAAGCACCTCCATCATCCAACAAGCAAACCAGCAAGAAGAAGAAAAACAACAACAACAACTTCATCATCATCATCAACAACAACAACCTCAACTTTTACAAACTCCAAGCTTTGTCATCTCACCAAACTCAAAAAATTCCTCATTATTCAACTTCCAAAACCCCAATTTCCCTGATCATCATCACCATCATCAATTACCCTTCTCTATGAATCTCCCTTCCATCTCTTCAAATTTCTTAAGCAAAGATGGAGGAGGAGATGATTTGGGGGAATTGGATCAAGCTCTTTTTCTCTATCTTGATGGACAAGAACCCTCTACAACCACTACTCAAGACCAAAGACAGAGTTTGGGCATGAGACCTCCGACTTTGAACATCTTCCCGTCGCAGCCGATGCATGTCGACCCGTTACCAATAAAAGGAAATACAGCATTGATAAACCATAGTGATTCAAAGATCAAAGCATCTGAGCCGTCCAGAGAGTTGGCCAACCAACGCAGCAGCAATGGAGCCACTGCATCTGGACCACCCCCAACCCAAACTACAACAACCGAACCTCATCCCAAACCTCCCAAACGTGAGCCCAACAAAAAAGGACTAACCTCAAGCTCAGAACAAGAAGGACCCAAAACCCCAGACCCCAAGACCTTAAGAAGATTGGCTCAAAATCGAGAGGCCGCTAGAAAAAGCAGACTTAGAAAAAAGGCGTATGTTCAGCAGTTAGAGATGAGTAGGATTAAGCTCACCCAGCTGGAGCAAGAACTACAAAGAGCAAGAACTCAGGGCATGTTTCTGGGTGGAGGAGCCGCCATTTTAGGACCTGACCAAGGACTTCCCTCTGGCTTCCATAACCTCAGCTCCGGTGATAATCCACAACTCTCATCATTTGGCCATGCTGCGGTGTTCGACATTGAGTATGGGCGGTGGCAAGAGGAGCACCACCGGCTAATGTGCGAGCTCCGAGCAGCAGTGCAAGAGCAGCTACCGGAGAACGAGTTGCGGTTGTTCGTGGACAGCTGCCTGGCCCATTACGACGAGGTTCTGAACTTGAAGATGATGGTGGCTAAGTCGGACGTGTTCCACCTTGTCTCCGGCATGTGGAAAACGCCGGCGGAGAGATGCTTCATGTGGATGGGAGATTTTAGGCCCTCCGAACTCATCAAGATAATAATGGGTCAACTAGAGCCATTAACAGAGCATCAAATATTAAACATTTGTGCATTGCAACAATCAACACAAGAGAGTGAAGAAGCATTGTCTCAAGGACTTGAAGCCCTAAATCAGTCCTTATCAGACACCATCACCTCTGATTCATTGAGTAGCCCTCCCAATATGGCTAACTATATGGGCCAAATGACCTTAGCCATCAACAAGCTCTCCACTCTTGAAGGCTTTGTAAGACAGGCAGAGAATTTGAGACACCAAACGATTCACCGATTGCAACAAATGTTGACAACTCGACAAGCAGCAAGATGTTTATTAGCCATTGCTGAATATTTTCATAGGCTTCGAGCTTTGAGTTCCCTATGGTTGGCTCGTCCAAGGCAAGATTAA 1572 45.93 MASSNIKSTSIIQQANQQEEEKQQQQLHHHHQQQQPQLLQTPSFVISPNSKNSSLFNFQNPNFPDHHHHHQLPFSMNLPSISSNFLSKDGGGDDLGELDQALFLYLDGQEPSTTTTQDQRQSLGMRPPTLNIFPSQPMHVDPLPIKGNTALINHSDSKIKASEPSRELANQRSSNGATASGPPPTQTTTTEPHPKPPKREPNKKGLTSSSEQEGPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLEMSRIKLTQLEQELQRARTQGMFLGGGAAILGPDQGLPSGFHNLSSGDNPQLSSFGHAAVFDIEYGRWQEEHHRLMCELRAAVQEQLPENELRLFVDSCLAHYDEVLNLKMMVAKSDVFHLVSGMWKTPAERCFMWMGDFRPSELIKIIMGQLEPLTEHQILNICALQQSTQESEEALSQGLEALNQSLSDTITSDSLSSPPNMANYMGQMTLAINKLSTLEGFVRQAENLRHQTIHRLQQMLTTRQAARCLLAIAEYFHRLRALSSLWLARPRQD 523
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33070315 33078384 - CrPI670011_10g018500.1 Cre10g1850 511152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre10g1850 523 MobiDBLite consensus disorder prediction 1 21 - -
Cre10g1850 523 MobiDBLite consensus disorder prediction 166 186 - -
Cre10g1850 523 MobiDBLite consensus disorder prediction 108 129 - -
Cre10g1850 523 FunFam BZIP family transcription factor 220 269 - -
Cre10g1850 523 Pfam Seed dormancy control 323 397 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Cre10g1850 523 Gene3D - 220 270 - -
Cre10g1850 523 PANTHER TRANSCRIPTION FACTOR TGA9 129 522 - -
Cre10g1850 523 SUPERFAMILY Leucine zipper domain 221 263 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre10g1850 523 MobiDBLite consensus disorder prediction 1 37 - -
Cre10g1850 523 Pfam Basic region leucine zipper 218 262 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre10g1850 523 CDD bZIP_HBP1b-like 221 273 - -
Cre10g1850 523 MobiDBLite consensus disorder prediction 108 224 - -
Cre10g1850 523 SMART brlzneu 217 272 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre10g1850 523 Coils Coil 240 267 - -
Cre10g1850 523 ProSiteProfiles DOG1 domain profile. 305 519 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Cre10g1850 523 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 219 263 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre10g1850 523 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 224 239 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre10g1750 Cre-Chr10:31911664 Cre10g1850 Cre-Chr10:33070315 3.30E-77 dispersed
Cre10g1850 Cre-Chr10:33070315 Cre11g1250 Cre-Chr11:10870287 1.30E-64 dispersed
Cre10g1850 Cre-Chr10:33070315 Cre01g1119 Cre-Chr1:20413933 1.20E-91 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54581 PF14144 DOG1 6.30E-31 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre10g1850 K14431 - csv:101204923 854.744